Wall clock time and date at job start Tue Mar 31 2020 19:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00056 * 2 1 4 4 S 1.65596 * 119.99937 * 180.02562 * 2 1 3 5 5 O 1.42100 * 104.28001 * 333.92947 * 4 2 1 6 6 O 1.42098 * 104.27637 * 206.07159 * 4 2 1 7 7 C 1.81399 * 104.44987 * 90.00016 * 4 2 1 8 8 C 1.53004 * 109.47047 * 179.97438 * 7 4 2 9 9 C 1.50707 * 109.47187 * 180.02562 * 8 7 4 10 10 O 1.21285 * 119.99567 * 359.97438 * 9 8 7 11 11 N 1.34767 * 120.00115 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00124 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47196 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.63820 * 56.69151 * 13 12 11 15 15 C 1.55154 * 110.71866 * 180.02562 * 13 12 11 16 16 C 1.54908 * 101.58039 * 153.86876 * 15 13 12 17 17 N 1.47424 * 104.83135 * 322.98767 * 16 15 13 18 18 C 1.36939 * 125.64897 * 204.16934 * 17 16 15 19 19 H 1.08000 * 120.00316 * 161.47543 * 18 17 16 20 20 C 1.38812 * 119.99624 * 341.47140 * 18 17 16 21 21 N 1.31619 * 119.99593 * 157.62169 * 20 18 17 22 22 Si 1.86800 * 120.00239 * 337.61870 * 20 18 17 23 23 H 1.48502 * 109.46917 * 84.53800 * 22 20 18 24 24 H 1.48504 * 109.47069 * 204.53734 * 22 20 18 25 25 H 1.48501 * 109.47210 * 324.53796 * 22 20 18 26 26 C 1.47018 * 108.70415 * 24.13111 * 17 16 15 27 27 H 1.08999 * 109.46951 * 270.00354 * 1 2 3 28 28 H 1.09005 * 109.46808 * 30.00144 * 1 2 3 29 29 H 1.08994 * 109.47048 * 149.99427 * 1 2 3 30 30 H 1.09002 * 109.47507 * 270.00183 * 3 2 1 31 31 H 1.08999 * 109.47530 * 29.99936 * 3 2 1 32 32 H 1.08995 * 109.47120 * 150.00090 * 3 2 1 33 33 H 1.08996 * 109.47584 * 60.00047 * 7 4 2 34 34 H 1.09003 * 109.47204 * 300.00069 * 7 4 2 35 35 H 1.08998 * 109.47414 * 299.99676 * 8 7 4 36 36 H 1.08998 * 109.47305 * 60.00233 * 8 7 4 37 37 H 0.97007 * 119.99909 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.46823 * 300.00125 * 12 11 9 39 39 H 1.08998 * 109.46656 * 59.99922 * 12 11 9 40 40 H 1.08999 * 111.00139 * 271.93860 * 15 13 12 41 41 H 1.08993 * 111.00506 * 35.79085 * 15 13 12 42 42 H 1.09001 * 110.36508 * 204.15632 * 16 15 13 43 43 H 1.08994 * 110.46208 * 81.87435 * 16 15 13 44 44 H 0.97001 * 119.99918 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.88261 * 239.52621 * 26 17 16 46 46 H 1.08998 * 110.01383 * 118.42576 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.3970 -2.3564 0.6041 6 8 3.5394 -1.1194 0.6047 7 6 2.5193 -1.8253 -1.7574 8 6 3.2819 -3.1449 -1.8919 9 6 3.4705 -3.4697 -3.3514 10 8 3.0372 -2.7197 -4.2004 11 7 4.1198 -4.5939 -3.7132 12 6 4.3026 -4.9098 -5.1321 13 6 5.0654 -6.2294 -5.2665 14 1 4.5434 -7.0300 -4.7424 15 6 5.2759 -6.5919 -6.7604 16 6 6.5530 -7.4659 -6.6913 17 7 7.3836 -6.8386 -5.6473 18 6 8.7449 -6.9426 -5.5408 19 1 9.2961 -6.2295 -4.9457 20 6 9.4163 -7.9647 -6.1976 21 7 10.6968 -7.8390 -6.4748 22 14 8.5025 -9.5183 -6.6880 23 1 7.8260 -9.3038 -7.9925 24 1 9.4659 -10.6420 -6.8089 25 1 7.4891 -9.8444 -5.6526 26 6 6.5085 -6.0820 -4.7399 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 2.3792 1.5834 -1.0277 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.0866 -1.0278 -2.2372 34 1 1.5451 -1.9177 -2.2376 35 1 4.2562 -3.0521 -1.4120 36 1 2.7150 -3.9428 -1.4122 37 1 4.4654 -5.1942 -3.0342 38 1 3.3285 -5.0022 -5.6121 39 1 4.8699 -4.1121 -5.6117 40 1 4.4318 -7.1634 -7.1464 41 1 5.4466 -5.6973 -7.3592 42 1 7.0737 -7.4531 -7.6488 43 1 6.3002 -8.4885 -6.4113 44 1 11.1661 -8.5534 -6.9334 45 1 6.7968 -5.0308 -4.7378 46 1 6.5779 -6.4874 -3.7305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663644298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:38 Heat of formation + Delta-G solvation = -110.010252 kcal Electronic energy + Delta-G solvation = -26516.581801 eV Core-core repulsion = 22568.113095 eV Total energy + Delta-G solvation = -3948.468707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92395 -39.51176 -38.30133 -37.24497 -36.89049 -36.14240 -34.49703 -34.19241 -32.16198 -30.19647 -28.93719 -27.87485 -26.31290 -25.48107 -24.38400 -22.78391 -21.45592 -21.06274 -19.92630 -19.08520 -18.78441 -18.05502 -17.57343 -17.44966 -17.20143 -16.90953 -16.74844 -16.41977 -15.59556 -15.42728 -15.35568 -15.16972 -14.78776 -14.70526 -14.14593 -14.05074 -13.92857 -13.62900 -13.59300 -13.52108 -13.32812 -13.25937 -13.21825 -12.98242 -12.70685 -12.58984 -12.51445 -12.49785 -12.25795 -12.03985 -11.94864 -11.82752 -11.62508 -11.37739 -10.97939 -10.81012 -10.11054 -9.99149 -9.05487 -8.19117 -5.45714 -0.84804 1.30311 1.38597 1.47917 1.56427 1.59530 2.15381 2.40905 2.79170 3.02775 3.10843 3.29997 3.31692 3.66326 3.78682 3.80025 3.84909 3.87525 3.93188 4.34300 4.38993 4.39365 4.44621 4.51744 4.56647 4.57701 4.76061 4.78308 4.81246 4.82559 4.84155 4.98323 5.00731 5.01941 5.07093 5.07244 5.19107 5.35049 5.44742 5.55795 5.67575 6.09024 6.49843 6.76298 7.17577 7.53515 8.09882 9.00843 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.027005 B = 0.002013 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.596522 B =13903.426769 C =14292.872595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.009 6.009 3 C 0.072 3.928 4 S 2.627 3.373 5 O -0.980 6.980 6 O -0.984 6.984 7 C -0.602 4.602 8 C -0.145 4.145 9 C 0.520 3.480 10 O -0.577 6.577 11 N -0.720 5.720 12 C 0.141 3.859 13 C -0.097 4.097 14 H 0.106 0.894 15 C -0.110 4.110 16 C 0.099 3.901 17 N -0.630 5.630 18 C -0.237 4.237 19 H 0.056 0.944 20 C -0.042 4.042 21 N -0.958 5.958 22 Si 0.952 3.048 23 H -0.268 1.268 24 H -0.310 1.310 25 H -0.266 1.266 26 C 0.133 3.867 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.416 0.584 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.028 0.972 44 H 0.262 0.738 45 H 0.026 0.974 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.264 15.133 11.519 32.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.849 5.849 3 C -0.072 4.072 4 S 2.721 3.279 5 O -0.970 6.970 6 O -0.974 6.974 7 C -0.732 4.732 8 C -0.186 4.186 9 C 0.306 3.694 10 O -0.457 6.457 11 N -0.372 5.372 12 C 0.017 3.983 13 C -0.116 4.116 14 H 0.124 0.876 15 C -0.149 4.149 16 C -0.026 4.026 17 N -0.357 5.357 18 C -0.366 4.366 19 H 0.073 0.927 20 C -0.236 4.236 21 N -0.605 5.605 22 Si 0.780 3.220 23 H -0.194 1.194 24 H -0.238 1.238 25 H -0.191 1.191 26 C 0.009 3.991 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.253 0.747 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.044 0.956 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -26.109 15.170 11.659 32.369 hybrid contribution 0.717 -0.917 -0.713 1.365 sum -25.392 14.253 10.946 31.108 Atomic orbital electron populations 1.21726 0.76976 1.04593 1.02928 1.57175 1.16062 1.21546 1.90148 1.21824 0.97287 0.84747 1.03392 1.04434 0.72933 0.73076 0.77417 1.93566 1.65099 1.63769 1.74594 1.93559 1.45693 1.83385 1.74765 1.30367 1.11387 1.06030 1.25431 1.21551 1.04558 0.97614 0.94891 1.20621 0.76975 0.80447 0.91353 1.90689 1.51125 1.50018 1.53859 1.45997 1.57587 1.24415 1.09181 1.21247 1.00148 0.95244 0.81702 1.22363 0.94208 0.97644 0.97406 0.87559 1.22687 0.96645 1.00021 0.95534 1.22118 0.92643 0.95917 0.91892 1.44905 1.02251 1.59509 1.29064 1.18575 0.81014 1.08683 1.28285 0.92664 1.25702 0.96062 1.01484 1.00336 1.69986 1.11253 1.34228 1.45016 0.85867 0.77189 0.79965 0.78961 1.19430 1.23819 1.19129 1.21596 0.89534 0.94797 0.93212 0.92357 0.88561 0.90432 0.90951 0.88775 0.90841 0.83769 0.83249 0.85547 0.84734 0.74734 0.89959 0.92686 0.87551 0.90653 0.94483 0.95436 0.92894 0.95586 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.20 127.77 1.30 1.93 16 2 N -1.01 -11.22 3.52 -562.69 -1.98 -13.20 16 3 C 0.07 0.60 10.64 127.77 1.36 1.96 16 4 S 2.63 39.77 5.38 -56.49 -0.30 39.47 16 5 O -0.98 -20.13 17.09 -127.65 -2.18 -22.31 16 6 O -0.98 -21.34 16.57 -127.65 -2.12 -23.46 16 7 C -0.60 -7.48 5.47 71.98 0.39 -7.09 16 8 C -0.15 -1.97 5.71 29.85 0.17 -1.80 16 9 C 0.52 10.63 7.83 87.66 0.69 11.32 16 10 O -0.58 -15.99 15.98 -3.04 -0.05 -16.04 16 11 N -0.72 -13.63 5.40 -463.05 -2.50 -16.13 16 12 C 0.14 3.11 4.99 86.38 0.43 3.54 16 13 C -0.10 -2.43 3.02 -9.60 -0.03 -2.46 16 14 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 15 C -0.11 -3.05 6.53 31.98 0.21 -2.85 16 16 C 0.10 3.95 4.70 86.85 0.41 4.36 16 17 N -0.63 -29.48 3.21 -692.00 -2.22 -31.70 16 18 C -0.24 -13.69 10.57 84.03 0.89 -12.80 16 19 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 20 C -0.04 -2.47 5.43 84.86 0.46 -2.00 16 21 N -0.96 -61.05 13.97 21.65 0.30 -60.75 16 22 Si 0.95 46.65 24.27 68.60 1.66 48.31 16 23 H -0.27 -12.30 6.49 99.48 0.65 -11.65 16 24 H -0.31 -15.40 7.11 99.48 0.71 -14.70 16 25 H -0.27 -12.39 6.66 99.48 0.66 -11.73 16 26 C 0.13 4.70 6.52 86.73 0.57 5.27 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 28 H 0.10 0.28 8.07 -2.38 -0.02 0.26 16 29 H 0.08 0.50 7.79 -2.39 -0.02 0.48 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.44 8.07 -2.39 -0.02 0.42 16 32 H 0.07 0.81 6.91 -2.39 -0.02 0.80 16 33 H 0.14 1.72 8.10 -2.39 -0.02 1.70 16 34 H 0.15 1.56 8.10 -2.39 -0.02 1.54 16 35 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.42 6.01 8.33 -92.70 -0.77 5.23 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.44 8.06 -2.39 -0.02 1.42 16 40 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 42 H 0.04 1.64 6.64 -2.39 -0.02 1.62 16 43 H 0.03 1.12 5.57 -2.39 -0.01 1.10 16 44 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 45 H 0.03 0.96 7.76 -2.38 -0.02 0.94 16 46 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -85.40 380.19 -2.44 -87.83 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.09 Total: 8.60 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 6.85 Total: -0.62 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -6.39 Total: -121.78 kcal Atomic # 8 Polarization: -57.46 SS G_CDS: -4.35 Total: -61.81 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.66 Total: 48.31 kcal Atomic # 16 Polarization: 39.77 SS G_CDS: -0.30 Total: 39.47 kcal Total: -85.40 -2.44 -87.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.177 kcal (2) G-P(sol) polarization free energy of solvation -85.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds