Wall clock time and date at job start Tue Mar 31 2020 19:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99652 * 2 1 4 4 S 1.65596 * 120.00347 * 179.97438 * 2 1 3 5 5 O 1.42100 * 104.27603 * 333.93314 * 4 2 1 6 6 O 1.42101 * 104.27646 * 206.07255 * 4 2 1 7 7 C 1.81409 * 104.44796 * 90.00160 * 4 2 1 8 8 C 1.52995 * 109.46663 * 180.02562 * 7 4 2 9 9 C 1.50705 * 109.46982 * 180.02562 * 8 7 4 10 10 O 1.21283 * 119.99759 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00344 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99992 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47035 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.91541 * 308.90373 * 13 12 11 15 15 C 1.55153 * 111.00503 * 185.00063 * 13 12 11 16 16 C 1.54323 * 103.10236 * 206.33608 * 15 13 12 17 17 N 1.47486 * 107.03754 * 22.24109 * 16 15 13 18 18 C 1.36932 * 125.59278 * 181.00707 * 17 16 15 19 19 H 1.08009 * 119.99968 * 180.02562 * 18 17 16 20 20 C 1.38806 * 120.00375 * 0.02562 * 18 17 16 21 21 N 1.31621 * 119.99804 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00331 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46765 * 89.99781 * 22 20 18 24 24 H 1.48499 * 109.47272 * 209.99882 * 22 20 18 25 25 H 1.48499 * 109.47136 * 330.00058 * 22 20 18 26 26 C 1.47428 * 108.75727 * 1.02624 * 17 16 15 27 27 H 1.09008 * 109.46962 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47489 * 300.00028 * 1 2 3 29 29 H 1.09004 * 109.47323 * 60.00285 * 1 2 3 30 30 H 1.08999 * 109.47600 * 270.00006 * 3 2 1 31 31 H 1.09007 * 109.47262 * 30.00126 * 3 2 1 32 32 H 1.09004 * 109.47348 * 149.99892 * 3 2 1 33 33 H 1.08996 * 109.46633 * 60.00076 * 7 4 2 34 34 H 1.08992 * 109.46814 * 300.00007 * 7 4 2 35 35 H 1.08997 * 109.48072 * 60.00036 * 8 7 4 36 36 H 1.09001 * 109.47435 * 299.99611 * 8 7 4 37 37 H 0.97002 * 119.99905 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.47022 * 60.00359 * 12 11 9 39 39 H 1.08994 * 109.47334 * 299.99712 * 12 11 9 40 40 H 1.09002 * 110.72030 * 324.78875 * 15 13 12 41 41 H 1.09003 * 110.72184 * 87.88526 * 15 13 12 42 42 H 1.09000 * 109.88693 * 141.69901 * 16 15 13 43 43 H 1.09005 * 109.88012 * 262.86516 * 16 15 13 44 44 H 0.97005 * 120.00149 * 180.02562 * 21 20 18 45 45 H 1.09000 * 110.36462 * 217.05803 * 26 17 16 46 46 H 1.08996 * 110.46287 * 94.77884 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.3970 -2.3558 0.6062 6 8 3.5395 -1.1187 0.6058 7 6 2.5194 -1.8268 -1.7559 8 6 3.2810 -3.1470 -1.8891 9 6 3.4697 -3.4730 -3.3484 10 8 3.0371 -2.7234 -4.1980 11 7 4.1190 -4.5975 -3.7092 12 6 4.3019 -4.9146 -5.1278 13 6 5.0636 -6.2348 -5.2611 14 1 5.9715 -6.2229 -4.6581 15 6 5.3869 -6.5427 -6.7470 16 6 5.4924 -8.0822 -6.7704 17 7 4.7416 -8.5845 -5.6045 18 6 4.6055 -9.9004 -5.2510 19 1 4.0325 -10.1678 -4.3753 20 6 5.2039 -10.8906 -6.0178 21 7 5.9018 -10.5648 -7.0851 22 14 5.0176 -12.6858 -5.5358 23 1 3.8123 -13.2521 -6.1930 24 1 6.2196 -13.4422 -5.9698 25 1 4.8727 -12.7901 -4.0616 26 6 4.1620 -7.4367 -4.8835 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.3791 1.5835 -1.0276 31 1 1.6083 2.0284 0.5139 32 1 3.1499 1.1385 0.5139 33 1 3.0867 -1.0295 -2.2362 34 1 1.5453 -1.9196 -2.2358 35 1 2.7135 -3.9441 -1.4089 36 1 4.2552 -3.0546 -1.4091 37 1 4.4653 -5.1969 -3.0297 38 1 4.8691 -4.1174 -5.6081 39 1 3.3278 -5.0076 -5.6078 40 1 4.5802 -6.2016 -7.3959 41 1 6.3332 -6.0869 -7.0383 42 1 5.0559 -8.4699 -7.6908 43 1 6.5376 -8.3832 -6.6978 44 1 6.3197 -11.2569 -7.6212 45 1 4.1919 -7.6101 -3.8078 46 1 3.1373 -7.2595 -5.2101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663644299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:45 Heat of formation + Delta-G solvation = -81.844760 kcal Electronic energy + Delta-G solvation = -26402.371259 eV Core-core repulsion = 22455.123900 eV Total energy + Delta-G solvation = -3947.247359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -39.89303 -37.70616 -37.57656 -36.69673 -36.25077 -34.77422 -33.55495 -32.49298 -29.87373 -28.56478 -28.43589 -26.21782 -25.26913 -24.70781 -23.19528 -20.76377 -20.03660 -19.71563 -19.30183 -18.30091 -17.39298 -16.89277 -16.83109 -16.45561 -16.07533 -15.93385 -15.10514 -14.93219 -14.77811 -14.61457 -14.06548 -13.81610 -13.54095 -13.39435 -13.11351 -13.02025 -12.93892 -12.84882 -12.48337 -12.38540 -12.09244 -12.00420 -12.00226 -11.88567 -11.76322 -11.43987 -11.26115 -10.92390 -10.81547 -10.47850 -10.20877 -10.06714 -9.93656 -9.82953 -9.67700 -9.54773 -9.07754 -8.62742 -6.86202 -5.73450 -3.07147 -0.21899 2.14547 2.47459 3.04279 3.38739 3.43667 3.43755 3.45593 3.72967 3.94775 4.26098 4.36040 4.47252 4.58278 4.86378 4.90548 4.93950 5.05506 5.07665 5.10492 5.17832 5.31192 5.33378 5.36955 5.38474 5.45509 5.51836 5.63836 5.84730 5.97986 5.98033 6.01131 6.30225 6.34083 6.46346 6.49195 6.63854 6.86689 7.40848 7.53406 7.59730 7.80017 8.08437 8.22865 9.19157 9.79936 10.45791 11.38366 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.001957 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.701257 B =14304.616393 C =15008.784223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.007 6.007 3 C 0.081 3.919 4 S 2.610 3.390 5 O -0.951 6.951 6 O -0.952 6.952 7 C -0.610 4.610 8 C -0.138 4.138 9 C 0.520 3.480 10 O -0.542 6.542 11 N -0.722 5.722 12 C 0.131 3.869 13 C -0.118 4.118 14 H 0.080 0.920 15 C -0.135 4.135 16 C 0.177 3.823 17 N -0.607 5.607 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.142 3.858 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.404 0.596 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.252 0.748 45 H 0.036 0.964 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 24.191 12.560 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.846 5.846 3 C -0.064 4.064 4 S 2.703 3.297 5 O -0.941 6.941 6 O -0.942 6.942 7 C -0.739 4.739 8 C -0.179 4.179 9 C 0.304 3.696 10 O -0.419 6.419 11 N -0.374 5.374 12 C 0.008 3.992 13 C -0.138 4.138 14 H 0.099 0.901 15 C -0.174 4.174 16 C 0.053 3.947 17 N -0.334 5.334 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.016 3.984 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.239 0.761 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -7.224 24.066 12.623 28.119 hybrid contribution -0.042 -1.066 -0.311 1.111 sum -7.265 23.000 12.312 27.081 Atomic orbital electron populations 1.21602 0.78084 1.04028 1.02389 1.57267 1.15426 1.21780 1.90121 1.21620 0.97538 0.85064 1.02201 1.05117 0.73964 0.73263 0.77397 1.93610 1.64533 1.62434 1.73495 1.93594 1.44145 1.82872 1.73590 1.30445 1.10861 1.06054 1.26570 1.21379 1.02898 0.96489 0.97141 1.20130 0.77969 0.81210 0.90296 1.90698 1.49507 1.49213 1.52506 1.46083 1.57749 1.23862 1.09668 1.21444 1.00681 0.96722 0.80350 1.22625 0.99038 0.93097 0.99035 0.90130 1.22859 1.00373 1.00322 0.93856 1.21232 0.96893 0.85858 0.90723 1.44594 1.59675 1.01068 1.28018 1.19055 1.27503 0.80776 1.08398 0.90474 1.24814 1.00044 0.98123 0.97573 1.69963 1.38073 1.31361 1.17571 0.86108 0.77106 0.84716 0.77757 1.21608 1.21679 1.20693 1.21577 0.94322 0.86983 0.95551 0.89467 0.91619 0.92000 0.92553 0.90556 0.89633 0.84261 0.84222 0.87101 0.87218 0.76117 0.91554 0.91215 0.92231 0.91986 0.93816 0.93485 0.93742 0.94585 0.96354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 10.62 59.85 0.64 1.05 16 2 N -1.01 -6.43 3.52 -129.19 -0.45 -6.88 16 3 C 0.08 0.39 10.68 59.85 0.64 1.03 16 4 S 2.61 21.38 5.41 -107.50 -0.58 20.80 16 5 O -0.95 -10.50 16.57 -57.54 -0.95 -11.45 16 6 O -0.95 -10.32 16.57 -57.54 -0.95 -11.28 16 7 C -0.61 -4.50 5.47 37.16 0.20 -4.30 16 8 C -0.14 -1.14 5.71 -27.88 -0.16 -1.30 16 9 C 0.52 6.18 7.83 -10.99 -0.09 6.09 16 10 O -0.54 -8.28 15.98 5.56 0.09 -8.20 16 11 N -0.72 -8.39 5.50 -60.30 -0.33 -8.73 16 12 C 0.13 1.80 5.13 -4.04 -0.02 1.78 16 13 C -0.12 -1.88 3.05 -88.47 -0.27 -2.15 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.14 -2.40 6.41 -24.90 -0.16 -2.56 16 16 C 0.18 4.22 5.39 -2.81 -0.02 4.21 16 17 N -0.61 -15.23 3.41 -169.69 -0.58 -15.81 16 18 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 21 N -0.92 -26.96 10.31 55.49 0.57 -26.39 16 22 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.14 2.78 6.65 -2.52 -0.02 2.76 16 27 H 0.09 0.47 6.87 -51.92 -0.36 0.11 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.25 8.07 -51.93 -0.42 -0.17 16 32 H 0.09 0.47 6.91 -51.93 -0.36 0.12 16 33 H 0.14 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.14 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 3.87 8.47 -40.82 -0.35 3.52 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 40 H 0.06 1.00 8.04 -51.93 -0.42 0.59 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 43 H 0.05 1.24 7.39 -51.93 -0.38 0.85 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.02 0.37 7.90 -51.93 -0.41 -0.04 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -37.22 385.60 -9.59 -46.81 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.69 Total: -1.45 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 0.50 Total: -0.23 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.79 Total: -57.81 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.82 Total: -30.93 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 21.38 SS G_CDS: -0.58 Total: 20.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.22 -9.59 -46.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.034 kcal (2) G-P(sol) polarization free energy of solvation -37.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds