Wall clock time and date at job start Tue Mar 31 2020 19:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 120.00296 * 2 1 4 4 S 1.65604 * 119.99827 * 180.02562 * 2 1 3 5 5 O 1.42105 * 104.27700 * 333.92385 * 4 2 1 6 6 O 1.42098 * 104.27587 * 206.06924 * 4 2 1 7 7 C 1.81401 * 104.45250 * 89.99356 * 4 2 1 8 8 C 1.52998 * 109.47375 * 180.02562 * 7 4 2 9 9 C 1.50694 * 109.47186 * 180.02562 * 8 7 4 10 10 O 1.21285 * 119.99936 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00347 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00573 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46990 * 325.00265 * 12 11 9 14 14 C 1.52997 * 109.47430 * 204.99724 * 12 11 9 15 15 N 1.46510 * 109.46971 * 55.00029 * 14 12 11 16 16 C 1.36928 * 119.99813 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00208 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99781 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00201 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99759 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47491 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46967 * 120.00218 * 20 18 16 23 23 H 1.48499 * 109.47197 * 240.00178 * 20 18 16 24 24 C 1.53003 * 109.47194 * 84.99642 * 12 11 9 25 25 C 1.53001 * 117.51964 * 231.28709 * 24 12 11 26 26 C 1.52999 * 60.00190 * 107.47982 * 25 24 12 27 27 H 1.09001 * 109.46675 * 269.99838 * 1 2 3 28 28 H 1.08999 * 109.47100 * 29.99206 * 1 2 3 29 29 H 1.08998 * 109.47742 * 149.99492 * 1 2 3 30 30 H 1.08994 * 109.47429 * 270.00256 * 3 2 1 31 31 H 1.09007 * 109.46863 * 30.01058 * 3 2 1 32 32 H 1.09006 * 109.46581 * 150.00200 * 3 2 1 33 33 H 1.09009 * 109.46920 * 60.00064 * 7 4 2 34 34 H 1.09000 * 109.47315 * 300.00519 * 7 4 2 35 35 H 1.08995 * 109.47186 * 60.00213 * 8 7 4 36 36 H 1.09005 * 109.46828 * 300.00264 * 8 7 4 37 37 H 0.97002 * 119.99812 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.47132 * 174.99771 * 14 12 11 39 39 H 1.08998 * 109.47469 * 295.00258 * 14 12 11 40 40 H 0.96992 * 119.99894 * 0.02562 * 15 14 12 41 41 H 0.96998 * 119.99897 * 180.02562 * 19 18 16 42 42 H 1.09002 * 115.54973 * 85.58492 * 24 12 11 43 43 H 1.09001 * 117.49733 * 214.97413 * 25 24 12 44 44 H 1.08995 * 117.49577 * 359.97438 * 25 24 12 45 45 H 1.09004 * 117.50150 * 252.51496 * 26 25 24 46 46 H 1.09004 * 117.49681 * 107.48417 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.3969 -2.3564 0.6043 6 8 3.5394 -1.1195 0.6047 7 6 2.5192 -1.8256 -1.7574 8 6 3.2806 -3.1458 -1.8919 9 6 3.4690 -3.4706 -3.3513 10 8 3.0364 -2.7202 -4.2003 11 7 4.1173 -4.5954 -3.7132 12 6 4.3001 -4.9115 -5.1319 13 1 3.4276 -4.5777 -5.6938 14 6 4.4676 -6.4229 -5.3003 15 7 3.3272 -7.1115 -4.6906 16 6 3.2581 -8.4788 -4.7190 17 1 4.0445 -9.0496 -5.1906 18 6 2.1779 -9.1313 -4.1408 19 7 1.2198 -8.4358 -3.5657 20 14 2.0840 -10.9966 -4.1790 21 1 3.2768 -11.5381 -4.8784 22 1 2.0461 -11.5188 -2.7893 23 1 0.8547 -11.4157 -4.8990 24 6 5.5479 -4.1984 -5.6567 25 6 5.4021 -3.3640 -6.9309 26 6 5.5743 -2.6706 -5.5779 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3634 -0.8899 -0.5139 30 1 2.3792 1.5834 -1.0276 31 1 1.6085 2.0283 0.5140 32 1 3.1500 1.1382 0.5138 33 1 3.0865 -1.0280 -2.2372 34 1 1.5449 -1.9179 -2.2375 35 1 2.7130 -3.9431 -1.4123 36 1 4.2549 -3.0538 -1.4117 37 1 4.4630 -5.1957 -3.0342 38 1 4.5145 -6.6672 -6.3615 39 1 5.3884 -6.7430 -4.8127 40 1 2.6209 -6.5989 -4.2674 41 1 0.4652 -8.8918 -3.1614 42 1 6.4895 -4.7265 -5.5059 43 1 6.2477 -3.3432 -7.6184 44 1 4.4171 -3.3233 -7.3957 45 1 4.7024 -2.1735 -5.1526 46 1 6.5333 -2.1937 -5.3753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716632087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:19 Heat of formation + Delta-G solvation = -65.886505 kcal Electronic energy + Delta-G solvation = -27252.298035 eV Core-core repulsion = 23305.742677 eV Total energy + Delta-G solvation = -3946.555357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.92578 -37.35043 -37.34036 -36.50727 -36.04058 -35.05729 -33.47723 -33.16108 -31.10307 -28.40945 -28.23356 -25.47903 -24.70912 -23.89364 -22.18861 -21.54450 -20.54716 -20.05050 -19.09613 -18.11380 -17.32756 -17.04679 -16.66155 -16.13528 -16.07619 -15.75281 -15.04621 -14.89787 -14.69754 -14.49335 -14.23067 -13.69105 -13.34258 -13.25412 -13.20647 -12.92751 -12.87474 -12.66961 -12.63325 -12.25046 -12.15480 -11.88448 -11.78762 -11.73786 -11.67941 -11.21137 -11.13920 -10.96374 -10.92556 -10.84747 -10.19256 -10.17527 -9.97209 -9.74502 -9.62911 -9.35387 -8.95481 -8.70056 -7.00245 -5.81502 -3.11625 0.00384 2.36099 2.77626 3.26838 3.40875 3.46522 3.48858 3.64617 3.94698 4.08688 4.21371 4.44196 4.52526 4.61207 4.84863 4.88640 4.99725 5.04435 5.12207 5.19829 5.26363 5.26861 5.38396 5.44095 5.45649 5.48972 5.52150 5.56839 5.66650 5.74366 5.80586 5.86403 6.03738 6.15811 6.18547 6.31854 6.43760 6.46286 6.63179 6.87910 7.65750 7.77449 8.36146 8.43031 9.48280 10.02930 10.38423 11.40875 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.003229 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.244300 B = 8668.747437 C =10723.311905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.009 6.009 3 C 0.082 3.918 4 S 2.610 3.390 5 O -0.947 6.947 6 O -0.955 6.955 7 C -0.607 4.607 8 C -0.138 4.138 9 C 0.527 3.473 10 O -0.544 6.544 11 N -0.705 5.705 12 C 0.168 3.832 13 H 0.088 0.912 14 C 0.148 3.852 15 N -0.732 5.732 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.163 4.163 25 C -0.171 4.171 26 C -0.186 4.186 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.406 0.594 38 H 0.036 0.964 39 H 0.026 0.974 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 20.501 4.323 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.848 5.848 3 C -0.064 4.064 4 S 2.703 3.297 5 O -0.937 6.937 6 O -0.945 6.945 7 C -0.737 4.737 8 C -0.179 4.179 9 C 0.312 3.688 10 O -0.423 6.423 11 N -0.355 5.355 12 C 0.063 3.937 13 H 0.106 0.894 14 C 0.020 3.980 15 N -0.377 5.377 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.183 4.183 25 C -0.208 4.208 26 C -0.223 4.223 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.241 0.759 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.135 0.865 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.302 20.401 4.457 21.321 hybrid contribution -0.288 -1.022 -0.353 1.119 sum 4.014 19.379 4.104 20.212 Atomic orbital electron populations 1.21506 0.78048 1.03235 1.02499 1.57350 1.15364 1.21809 1.90256 1.21620 0.97547 0.85154 1.02059 1.05156 0.73943 0.73127 0.77506 1.93630 1.64419 1.62225 1.73460 1.93577 1.44216 1.82973 1.73723 1.30406 1.10933 1.06026 1.26289 1.21365 1.02643 0.96475 0.97426 1.20025 0.77460 0.81235 0.90111 1.90599 1.49880 1.49437 1.52340 1.45944 1.57184 1.23378 1.08956 1.20826 0.96131 0.95691 0.81017 0.89377 1.20921 0.92171 0.87601 0.97326 1.42351 1.22919 1.04000 1.68436 1.19246 1.04686 0.82663 1.30852 0.91064 1.24759 0.97104 0.97954 1.00968 1.69667 1.11465 1.34126 1.42580 0.86112 0.77324 0.85462 0.77210 1.20571 1.21811 1.21856 1.22657 0.99743 0.93466 1.02399 1.22881 1.02811 1.04428 0.90707 1.23261 1.03643 0.94574 1.00859 0.92208 0.90957 0.90726 0.92644 0.90671 0.89702 0.84463 0.84182 0.86841 0.87527 0.75863 0.94669 0.95671 0.78036 0.93454 0.87824 0.89195 0.88772 0.86545 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.20 59.85 0.61 1.27 16 2 N -1.01 -8.50 3.52 -129.20 -0.45 -8.96 16 3 C 0.08 0.52 10.64 59.85 0.64 1.16 16 4 S 2.61 27.93 5.38 -107.50 -0.58 27.35 16 5 O -0.95 -13.41 17.09 -57.54 -0.98 -14.39 16 6 O -0.95 -12.32 16.57 -57.54 -0.95 -13.27 16 7 C -0.61 -6.12 5.47 37.16 0.20 -5.92 16 8 C -0.14 -1.61 5.71 -27.89 -0.16 -1.77 16 9 C 0.53 7.86 7.16 -10.99 -0.08 7.78 16 10 O -0.54 -9.28 13.01 5.55 0.07 -9.21 16 11 N -0.70 -10.72 4.50 -53.81 -0.24 -10.96 16 12 C 0.17 2.74 2.43 -67.93 -0.17 2.58 16 13 H 0.09 1.64 7.34 -51.93 -0.38 1.26 16 14 C 0.15 2.82 5.80 -4.04 -0.02 2.79 16 15 N -0.73 -17.76 5.43 -59.91 -0.33 -18.09 16 16 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 20 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C -0.16 -2.24 5.36 -90.61 -0.49 -2.72 16 25 C -0.17 -2.18 10.18 -26.73 -0.27 -2.45 16 26 C -0.19 -2.45 9.73 -26.73 -0.26 -2.71 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 29 H 0.07 0.53 7.79 -51.93 -0.40 0.12 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 32 H 0.08 0.60 6.91 -51.93 -0.36 0.24 16 33 H 0.14 1.20 8.10 -51.92 -0.42 0.78 16 34 H 0.14 1.40 8.10 -51.92 -0.42 0.98 16 35 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.41 5.83 8.60 -40.82 -0.35 5.48 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.39 9.95 7.33 -40.82 -0.30 9.65 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.10 1.33 8.11 -51.93 -0.42 0.91 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 45 H 0.12 1.75 5.02 -51.93 -0.26 1.49 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -35.93 390.37 -9.62 -45.55 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.50 Total: 13.13 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.24 Total: -7.20 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.30 Total: -64.94 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.86 Total: -36.87 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 27.93 SS G_CDS: -0.58 Total: 27.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.93 -9.62 -45.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.338 kcal (2) G-P(sol) polarization free energy of solvation -35.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds