Wall clock time and date at job start Tue Mar 31 2020 19:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00008 * 2 1 4 4 S 1.65602 * 120.00348 * 180.02562 * 2 1 3 5 5 O 1.42102 * 104.27460 * 333.92812 * 4 2 1 6 6 O 1.42099 * 104.27751 * 206.07327 * 4 2 1 7 7 C 1.81400 * 104.45127 * 89.99795 * 4 2 1 8 8 C 1.52995 * 109.46819 * 180.02562 * 7 4 2 9 9 C 1.50704 * 109.46780 * 180.02562 * 8 7 4 10 10 O 1.21278 * 119.99995 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99703 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99726 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47007 * 34.99037 * 12 11 9 14 14 C 1.52996 * 109.47012 * 154.99585 * 12 11 9 15 15 N 1.46498 * 109.47059 * 304.99483 * 14 12 11 16 16 C 1.36943 * 119.99752 * 179.72430 * 15 14 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.53003 * 109.46609 * 274.99704 * 12 11 9 25 25 C 1.52996 * 117.49852 * 128.74926 * 24 12 11 26 26 C 1.52995 * 117.50233 * 60.08634 * 24 12 11 27 27 H 1.08994 * 109.47290 * 269.99864 * 1 2 3 28 28 H 1.08999 * 109.47018 * 30.00510 * 1 2 3 29 29 H 1.09000 * 109.47047 * 149.99489 * 1 2 3 30 30 H 1.09004 * 109.47449 * 240.00175 * 3 2 1 31 31 H 1.09003 * 109.46843 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47416 * 119.99789 * 3 2 1 33 33 H 1.09000 * 109.46627 * 60.00090 * 7 4 2 34 34 H 1.08996 * 109.47304 * 300.00269 * 7 4 2 35 35 H 1.09000 * 109.47753 * 60.00405 * 8 7 4 36 36 H 1.09006 * 109.47172 * 299.99917 * 8 7 4 37 37 H 0.97000 * 119.99883 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.47066 * 184.99751 * 14 12 11 39 39 H 1.08994 * 109.46974 * 64.99899 * 14 12 11 40 40 H 0.97001 * 120.00384 * 0.02562 * 15 14 12 41 41 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 42 42 H 1.09006 * 115.54473 * 274.41180 * 24 12 11 43 43 H 1.08997 * 117.49676 * 359.97438 * 25 24 12 44 44 H 1.08999 * 117.49788 * 145.01561 * 25 24 12 45 45 H 1.09001 * 117.49820 * 214.97543 * 26 24 12 46 46 H 1.09004 * 117.49643 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.3970 -2.3564 0.6042 6 8 3.5395 -1.1193 0.6048 7 6 2.5194 -1.8254 -1.7574 8 6 3.2809 -3.1455 -1.8918 9 6 3.4695 -3.4702 -3.3513 10 8 3.0369 -2.7199 -4.2003 11 7 4.1180 -4.5951 -3.7131 12 6 4.3008 -4.9110 -5.1319 13 1 4.4496 -3.9886 -5.6933 14 6 5.5248 -5.8135 -5.2998 15 7 6.6918 -5.1721 -4.6891 16 6 7.9084 -5.8005 -4.7116 17 1 8.0084 -6.7669 -5.1834 18 6 9.0130 -5.1954 -4.1280 19 7 8.8909 -4.0179 -3.5525 20 14 10.6725 -6.0522 -4.1592 21 1 11.0880 -6.2753 -5.5673 22 1 11.6805 -5.2041 -3.4737 23 1 10.5684 -7.3586 -3.4608 24 6 3.0586 -5.6332 -5.6576 25 6 2.4113 -5.0885 -6.9324 26 6 1.7234 -4.8904 -5.5794 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 2.8241 1.3265 -0.8900 31 1 1.4891 2.0972 -0.0005 32 1 2.8241 1.3265 0.8899 33 1 3.0866 -1.0277 -2.2371 34 1 1.5452 -1.9178 -2.2375 35 1 2.7133 -3.9430 -1.4122 36 1 4.2552 -3.0535 -1.4116 37 1 4.4636 -5.1953 -3.0340 38 1 5.7134 -5.9763 -6.3610 39 1 5.3399 -6.7708 -4.8126 40 1 6.6020 -4.3044 -4.2651 41 1 9.6628 -3.5949 -3.1450 42 1 3.0436 -6.7127 -5.5072 43 1 2.8702 -4.2154 -7.3963 44 1 1.9700 -5.8095 -7.6205 45 1 0.8298 -5.4812 -5.3779 46 1 1.7299 -3.8872 -5.1529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716632088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:24 Heat of formation + Delta-G solvation = -65.583319 kcal Electronic energy + Delta-G solvation = -27252.708538 eV Core-core repulsion = 23306.166328 eV Total energy + Delta-G solvation = -3946.542210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.92498 -37.34820 -37.32328 -36.50564 -36.04235 -35.05244 -33.47430 -33.16052 -31.10043 -28.41222 -28.22962 -25.48349 -24.72743 -23.89012 -22.19119 -21.53991 -20.54683 -20.04931 -19.10010 -18.08758 -17.31528 -17.04040 -16.65269 -16.13199 -16.08001 -15.75103 -15.04294 -14.88726 -14.66138 -14.49165 -14.23036 -13.69011 -13.44689 -13.26123 -13.19874 -12.95973 -12.87118 -12.66499 -12.53739 -12.23734 -12.15148 -11.94543 -11.78355 -11.73459 -11.67894 -11.21280 -11.13349 -10.95984 -10.92599 -10.81650 -10.23929 -10.17784 -9.98328 -9.73599 -9.62885 -9.34961 -8.94099 -8.69922 -6.99994 -5.80841 -3.11134 0.00576 2.36626 2.77712 3.26918 3.41863 3.46451 3.47657 3.65143 3.94316 4.08659 4.20822 4.40799 4.52916 4.60899 4.84980 4.88351 4.97895 5.06947 5.12288 5.19548 5.24728 5.26547 5.38293 5.43433 5.44060 5.50807 5.52365 5.55034 5.66976 5.74503 5.80605 5.86570 6.03849 6.15539 6.18870 6.31911 6.43904 6.46324 6.63347 6.88064 7.65069 7.77549 8.36864 8.43092 9.48724 10.03378 10.38855 11.41381 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.003231 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.223549 B = 8664.317117 C =10720.255022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.010 6.010 3 C 0.089 3.911 4 S 2.610 3.390 5 O -0.954 6.954 6 O -0.947 6.947 7 C -0.607 4.607 8 C -0.138 4.138 9 C 0.527 3.473 10 O -0.544 6.544 11 N -0.705 5.705 12 C 0.168 3.832 13 H 0.088 0.912 14 C 0.148 3.852 15 N -0.732 5.732 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.163 4.163 25 C -0.171 4.171 26 C -0.187 4.187 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.406 0.594 38 H 0.036 0.964 39 H 0.025 0.975 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.896 6.663 4.244 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.849 5.849 3 C -0.057 4.057 4 S 2.703 3.297 5 O -0.944 6.944 6 O -0.937 6.937 7 C -0.737 4.737 8 C -0.179 4.179 9 C 0.312 3.688 10 O -0.423 6.423 11 N -0.355 5.355 12 C 0.063 3.937 13 H 0.106 0.894 14 C 0.020 3.980 15 N -0.377 5.377 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.740 3.260 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.182 4.182 25 C -0.208 4.208 26 C -0.223 4.223 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.241 0.759 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.791 6.649 4.385 21.334 hybrid contribution 1.009 -0.313 -0.355 1.114 sum -18.783 6.337 4.030 20.228 Atomic orbital electron populations 1.21515 0.78232 1.03051 1.02385 1.57403 1.15250 1.21947 1.90286 1.21568 0.96686 0.84925 1.02470 1.05169 0.73906 0.73089 0.77507 1.93595 1.64756 1.62425 1.73610 1.93620 1.43907 1.82745 1.73463 1.30398 1.10554 1.06398 1.26337 1.21366 1.03111 0.96001 0.97432 1.20026 0.77633 0.81060 0.90106 1.90596 1.50117 1.49203 1.52339 1.45950 1.56743 1.23818 1.08958 1.20830 0.92930 0.98902 0.81007 0.89373 1.20917 0.85744 0.94016 0.97327 1.42335 1.04297 1.22610 1.68442 1.19157 0.86186 1.01353 1.30924 0.91175 1.24755 0.98102 0.96959 1.00895 1.69650 1.30037 1.15854 1.42325 0.86252 0.83834 0.78448 0.77502 1.21278 1.21659 1.21240 1.22656 0.94022 0.99199 1.02371 1.22893 1.04200 1.03046 0.90694 1.23270 0.94803 1.03407 1.00869 0.92296 0.90956 0.91004 0.92021 0.90244 0.91237 0.84153 0.84518 0.87524 0.86835 0.75861 0.94677 0.95695 0.78028 0.93348 0.87827 0.88768 0.89192 0.89867 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 10.17 59.84 0.61 1.21 16 2 N -1.01 -8.50 3.52 -129.21 -0.45 -8.95 16 3 C 0.09 0.63 10.26 59.85 0.61 1.24 16 4 S 2.61 28.08 5.38 -107.50 -0.58 27.50 16 5 O -0.95 -12.43 17.09 -57.54 -0.98 -13.41 16 6 O -0.95 -13.47 17.11 -57.54 -0.98 -14.45 16 7 C -0.61 -6.13 5.47 37.16 0.20 -5.93 16 8 C -0.14 -1.62 5.71 -27.88 -0.16 -1.78 16 9 C 0.53 7.87 7.16 -10.98 -0.08 7.79 16 10 O -0.54 -9.28 13.01 5.56 0.07 -9.20 16 11 N -0.70 -10.74 4.50 -53.80 -0.24 -10.98 16 12 C 0.17 2.74 2.43 -67.93 -0.17 2.58 16 13 H 0.09 1.64 7.34 -51.93 -0.38 1.26 16 14 C 0.15 2.82 5.80 -4.04 -0.02 2.80 16 15 N -0.73 -17.78 5.43 -59.91 -0.33 -18.11 16 16 C -0.25 -6.68 9.99 -15.06 -0.15 -6.83 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 20 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.16 -2.24 5.36 -90.62 -0.49 -2.72 16 25 C -0.17 -2.18 10.18 -26.70 -0.27 -2.45 16 26 C -0.19 -2.46 9.74 -26.70 -0.26 -2.72 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 29 H 0.07 0.42 7.79 -51.93 -0.40 0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.37 7.79 -51.93 -0.40 -0.03 16 32 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 33 H 0.14 1.40 8.10 -51.92 -0.42 0.98 16 34 H 0.14 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.41 5.85 8.60 -40.82 -0.35 5.49 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.39 9.96 7.33 -40.82 -0.30 9.66 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.10 1.33 8.11 -51.93 -0.42 0.91 16 43 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.12 1.75 5.02 -51.93 -0.26 1.48 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -36.00 391.04 -9.70 -45.70 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.53 Total: 13.08 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.26 Total: -7.21 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -0.30 Total: -64.99 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.90 Total: -37.06 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 28.08 SS G_CDS: -0.58 Total: 27.50 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.00 -9.70 -45.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.888 kcal (2) G-P(sol) polarization free energy of solvation -35.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds