Wall clock time and date at job start Tue Mar 31 2020 17:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 120.00142 * 2 1 4 4 H 1.48501 * 109.47354 * 240.00469 * 3 2 1 5 5 H 1.48505 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46967 * 120.00257 * 3 2 1 7 7 C 1.38946 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00040 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00595 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00693 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99711 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00188 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99924 * 180.02562 * 13 12 10 15 15 C 1.53786 * 113.61608 * 105.85932 * 14 13 12 16 16 C 1.53962 * 87.01719 * 89.22903 * 15 14 13 17 17 C 1.52998 * 113.74183 * 139.94755 * 16 15 14 18 18 N 1.46499 * 109.47146 * 87.39824 * 17 16 15 19 19 C 1.34782 * 119.99464 * 179.97438 * 18 17 16 20 20 O 1.21467 * 120.00102 * 0.02562 * 19 18 17 21 21 C 1.48541 * 119.99507 * 180.02562 * 19 18 17 22 22 N 1.32455 * 119.18738 * 359.73349 * 21 19 18 23 23 C 1.32115 * 120.76794 * 179.76011 * 22 21 19 24 24 C 1.38791 * 119.16317 * 0.50110 * 23 22 21 25 25 C 1.38804 * 118.51035 * 359.75475 * 24 23 22 26 26 N 1.32113 * 119.15824 * 359.97438 * 25 24 23 27 27 C 1.53781 * 113.61428 * 203.46824 * 14 13 12 28 28 H 0.97005 * 120.00057 * 359.97438 * 1 2 3 29 29 H 0.97006 * 119.99412 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.47122 * 60.00287 * 12 10 9 31 31 H 1.09001 * 109.46900 * 300.00559 * 12 10 9 32 32 H 1.00902 * 110.99778 * 303.95198 * 13 12 10 33 33 H 1.09002 * 112.84869 * 334.66356 * 14 13 12 34 34 H 1.08993 * 113.61491 * 203.75024 * 15 14 13 35 35 H 1.09000 * 113.61138 * 334.65362 * 15 14 13 36 36 H 1.08997 * 113.53543 * 270.80998 * 16 15 14 37 37 H 1.09004 * 109.46932 * 207.40247 * 17 16 15 38 38 H 1.09000 * 109.46657 * 327.39883 * 17 16 15 39 39 H 0.96996 * 120.00000 * 0.02562 * 18 17 16 40 40 H 1.08001 * 120.41489 * 180.25810 * 23 22 21 41 41 H 1.07997 * 120.74957 * 179.77159 * 24 23 22 42 42 H 1.07996 * 120.42022 * 180.02562 * 25 24 23 43 43 H 1.09001 * 113.61695 * 25.34696 * 27 14 13 44 44 H 1.08997 * 113.61223 * 156.25279 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1982 -5.9795 -0.0027 14 6 1.4979 -7.2708 -0.0039 15 6 1.5432 -7.9950 -1.3598 16 6 2.8517 -8.6470 -0.8771 17 6 2.9841 -10.1216 -1.2630 18 7 3.5871 -10.2257 -2.5941 19 6 3.8021 -11.4376 -3.1434 20 8 3.4956 -12.4432 -2.5350 21 6 4.4140 -11.5432 -4.4928 22 7 4.7371 -10.4360 -5.1440 23 6 5.2872 -10.4937 -6.3438 24 6 5.5156 -11.7336 -6.9242 25 6 5.1598 -12.8726 -6.2153 26 7 4.6185 -12.7422 -5.0172 27 6 2.3402 -8.4289 0.5567 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6167 -4.9201 -0.8919 31 1 0.6173 -4.9212 0.8880 32 1 2.8331 -5.9121 -0.7840 33 1 0.4979 -7.2104 0.4257 34 1 0.7286 -8.7048 -1.5031 35 1 1.6758 -7.3242 -2.2087 36 1 3.7419 -8.0653 -1.1163 37 1 3.6166 -10.6319 -0.5366 38 1 1.9972 -10.5842 -1.2739 39 1 3.8321 -9.4226 -3.0797 40 1 5.5522 -9.5874 -6.8680 41 1 5.9605 -11.8105 -7.9053 42 1 5.3241 -13.8530 -6.6374 43 1 3.1153 -8.1081 1.2527 44 1 1.7439 -9.2577 0.9383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100775607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:16 Heat of formation + Delta-G solvation = 6.925211 kcal Electronic energy + Delta-G solvation = -26614.589383 eV Core-core repulsion = 22568.040179 eV Total energy + Delta-G solvation = -4046.549205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.69257 -40.00474 -39.11585 -38.01488 -35.25827 -34.31916 -33.97629 -33.13344 -32.64067 -31.20064 -28.60038 -26.44508 -25.73633 -25.42568 -25.01546 -23.89572 -22.44060 -21.37338 -19.46837 -19.20029 -18.52091 -18.11567 -17.89108 -16.63725 -16.24477 -16.09645 -16.04092 -15.71655 -15.27464 -15.18145 -14.80180 -14.51055 -14.30451 -14.14180 -14.04971 -13.80668 -13.56790 -13.06890 -12.71284 -12.57575 -12.28523 -11.91506 -11.80503 -11.54112 -11.51724 -11.47778 -11.03844 -10.93137 -10.63779 -10.44592 -10.39321 -10.31151 -10.22182 -10.14660 -9.87233 -9.50393 -9.34416 -8.45613 -8.05049 -7.95951 -6.41903 -3.82797 -0.06891 0.49601 2.26687 2.41907 3.19849 3.25559 3.29933 3.38060 3.41162 3.82078 3.90620 3.97838 4.05162 4.26845 4.34437 4.44555 4.46129 4.52323 4.64020 4.71519 4.90595 5.10958 5.13678 5.17833 5.26805 5.40977 5.48119 5.62520 5.65016 5.68122 5.76678 5.81888 5.91182 6.02389 6.10846 6.13411 6.24216 6.31963 6.32679 7.02631 7.26653 7.42500 7.54720 7.66485 7.81789 8.05858 8.60983 9.17486 9.54032 10.05492 10.75710 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.001789 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.714636 B =15649.904571 C =16940.665171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.648 5.648 14 C 0.068 3.932 15 C -0.167 4.167 16 C -0.124 4.124 17 C 0.130 3.870 18 N -0.703 5.703 19 C 0.581 3.419 20 O -0.507 6.507 21 C 0.284 3.716 22 N -0.494 5.494 23 C 0.148 3.852 24 C -0.209 4.209 25 C 0.145 3.855 26 N -0.470 5.470 27 C -0.120 4.120 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.350 0.650 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.413 0.587 40 H 0.178 0.822 41 H 0.156 0.844 42 H 0.177 0.823 43 H 0.082 0.918 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 -23.238 -12.768 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.081 4.081 13 N -0.280 5.280 14 C -0.044 4.044 15 C -0.206 4.206 16 C -0.142 4.142 17 C 0.007 3.993 18 N -0.356 5.356 19 C 0.362 3.638 20 O -0.379 6.379 21 C 0.014 3.986 22 N -0.211 5.211 23 C -0.019 4.019 24 C -0.231 4.231 25 C -0.021 4.021 26 N -0.185 5.185 27 C -0.159 4.159 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.171 0.829 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.249 0.751 40 H 0.195 0.805 41 H 0.173 0.827 42 H 0.194 0.806 43 H 0.101 0.899 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.429 -23.701 -10.672 26.554 hybrid contribution 0.020 1.155 -2.270 2.547 sum 5.449 -22.546 -12.942 26.562 Atomic orbital electron populations 1.69603 1.05930 1.28261 1.50509 1.25261 0.95638 0.99721 0.97309 0.85915 0.78756 0.80453 0.79068 1.19931 1.20986 1.19883 1.19655 0.93349 0.82256 1.47716 0.87977 1.41857 1.09204 1.04594 1.64320 1.19824 0.88390 0.84747 0.84501 1.90522 1.13769 1.87089 1.55469 1.21708 0.94372 0.90807 1.01249 1.59945 1.18070 0.99137 1.50848 1.22583 0.97281 0.89346 0.95158 1.23839 0.97492 1.00539 0.98757 1.22856 0.98874 0.94051 0.98453 1.21543 0.98546 0.96809 0.82378 1.45831 1.62274 1.07988 1.19518 1.17255 0.79227 0.84205 0.83096 1.90817 1.49931 1.35973 1.61165 1.22934 0.95114 0.84698 0.95894 1.68328 1.11107 1.32272 1.09345 1.23370 0.90057 0.98551 0.89887 1.23233 1.01792 0.94901 1.03181 1.23431 0.89836 1.00024 0.88807 1.68258 1.11361 1.26616 1.12230 1.23026 1.00142 0.97576 0.95177 0.91823 0.77447 0.93780 0.89511 0.82909 0.89737 0.89666 0.91315 0.88159 0.90857 0.90914 0.75054 0.80457 0.82657 0.80576 0.89940 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 10 C 0.44 10.29 7.82 -10.99 -0.09 10.21 16 11 O -0.58 -15.75 15.78 5.55 0.09 -15.66 16 12 C 0.05 0.88 6.02 -4.98 -0.03 0.85 16 13 N -0.65 -10.07 6.19 -107.13 -0.66 -10.73 16 14 C 0.07 0.78 4.26 -66.90 -0.28 0.50 16 15 C -0.17 -1.62 7.18 -25.82 -0.19 -1.80 16 16 C -0.12 -1.15 3.50 -89.71 -0.31 -1.46 16 17 C 0.13 1.22 5.52 -4.04 -0.02 1.20 16 18 N -0.70 -7.01 5.54 -61.02 -0.34 -7.34 16 19 C 0.58 7.18 7.85 -12.01 -0.09 7.08 16 20 O -0.51 -7.84 16.86 5.40 0.09 -7.75 16 21 C 0.28 3.14 7.60 -157.08 -1.19 1.94 16 22 N -0.49 -4.42 9.58 -11.12 -0.11 -4.53 16 23 C 0.15 0.83 11.30 -17.23 -0.19 0.63 16 24 C -0.21 -0.86 10.18 -39.17 -0.40 -1.26 16 25 C 0.15 0.90 11.30 -17.22 -0.19 0.70 16 26 N -0.47 -5.03 10.13 -11.12 -0.11 -5.14 16 27 C -0.12 -1.20 7.44 -25.92 -0.19 -1.39 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 32 H 0.35 5.60 7.79 -39.29 -0.31 5.30 16 33 H 0.08 0.94 7.88 -51.93 -0.41 0.53 16 34 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 35 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 39 H 0.41 3.65 7.78 -40.82 -0.32 3.34 16 40 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.16 0.08 8.06 -52.49 -0.42 -0.35 16 42 H 0.18 0.47 8.06 -52.49 -0.42 0.04 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.72 8.10 -51.93 -0.42 0.29 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -35.48 381.99 -8.98 -44.46 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.90 Total: 13.73 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -3.43 Total: 9.22 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -0.55 Total: -65.70 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.18 Total: -23.41 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.48 -8.98 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100775607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.381 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds