Wall clock time and date at job start Tue Mar 31 2020 18:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47181 * 2 1 4 4 C 1.46504 * 119.99625 * 270.00073 * 3 2 1 5 5 C 1.50697 * 109.46947 * 269.99726 * 4 3 2 6 6 H 1.07995 * 120.00124 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99997 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99958 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00078 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47056 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47175 * 119.99345 * 9 7 5 12 12 H 1.48501 * 109.46947 * 239.99341 * 9 7 5 13 13 C 1.34780 * 120.00105 * 89.99449 * 3 2 1 14 14 O 1.21284 * 119.99696 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00078 * 0.02562 * 13 3 2 16 16 N 1.46503 * 109.46938 * 179.97438 * 15 13 3 17 17 C 1.35689 * 119.86053 * 90.00426 * 16 15 13 18 18 N 1.30078 * 123.04822 * 180.27905 * 17 16 15 19 19 C 1.34234 * 121.87820 * 359.42732 * 18 17 16 20 20 C 1.40380 * 119.17435 * 0.57373 * 19 18 17 21 21 C 1.40736 * 107.26658 * 179.71943 * 20 19 18 22 22 N 1.30445 * 108.32359 * 359.97438 * 21 20 19 23 23 N 1.35825 * 134.23499 * 180.18938 * 19 18 17 24 24 C 1.46505 * 125.84034 * 0.39409 * 23 19 18 25 25 C 1.53003 * 109.47154 * 269.96815 * 24 23 19 26 26 C 1.35363 * 119.85849 * 270.02082 * 16 15 13 27 27 O 1.21834 * 121.25080 * 359.97438 * 26 16 15 28 28 H 1.08998 * 109.47039 * 60.00512 * 1 2 3 29 29 H 1.08998 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47399 * 300.00279 * 1 2 3 31 31 H 1.08992 * 109.47412 * 239.99880 * 2 1 3 32 32 H 1.08998 * 109.47039 * 119.99487 * 2 1 3 33 33 H 1.08997 * 109.46997 * 30.00093 * 4 3 2 34 34 H 1.09003 * 109.47148 * 149.99836 * 4 3 2 35 35 H 0.97000 * 119.99818 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.46677 * 59.99634 * 15 13 3 37 37 H 1.08997 * 109.47263 * 300.00063 * 15 13 3 38 38 H 1.08002 * 118.47220 * 359.97438 * 17 16 15 39 39 H 1.08008 * 125.83878 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.47419 * 29.96861 * 24 23 19 41 41 H 1.08996 * 109.47241 * 149.96882 * 24 23 19 42 42 H 1.08998 * 109.46995 * 300.00306 * 25 24 23 43 43 H 1.09003 * 109.46903 * 60.00297 * 25 24 23 44 44 H 1.09002 * 109.47008 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3904 -2.8775 8 7 3.3493 3.1264 -3.6177 9 14 5.9133 2.0962 -3.4171 10 1 6.6007 1.2403 -2.4170 11 1 5.9204 1.4179 -4.7381 12 1 6.6214 3.3971 -3.5249 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1671 15 6 1.9921 1.3061 2.4723 16 7 2.3099 2.2036 3.5858 17 6 1.3469 3.0097 4.0997 18 7 1.5618 3.8333 5.0834 19 6 2.7635 3.9357 5.6727 20 6 3.8233 3.1409 5.2082 21 6 4.9519 3.4513 5.9897 22 7 4.6105 4.3612 6.8598 23 7 3.2583 4.6850 6.6917 24 6 2.5061 5.6641 7.4804 25 6 2.6085 7.0395 6.8181 26 6 3.5630 2.2255 4.0973 27 8 4.4410 1.5092 3.6496 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.5816 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1385 35 1 3.6754 3.5168 -4.4436 36 1 2.6227 0.4189 2.5299 37 1 0.9443 1.0116 2.5302 38 1 0.3574 2.9690 3.6689 39 1 5.9331 3.0119 5.8861 40 1 1.4600 5.3626 7.5319 41 1 2.9198 5.7141 8.4876 42 1 3.6547 7.3410 6.7667 43 1 2.1948 6.9894 5.8109 44 1 2.0485 7.7678 7.4047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192485458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:00 Heat of formation + Delta-G solvation = 43.372673 kcal Electronic energy + Delta-G solvation = -28871.605966 eV Core-core repulsion = 24826.637242 eV Total energy + Delta-G solvation = -4044.968724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.15149 -40.31920 -38.81008 -37.42215 -35.50490 -34.67887 -34.40566 -32.82633 -30.26051 -30.08599 -29.86935 -28.81654 -26.63290 -24.78473 -24.18982 -23.32890 -23.11506 -22.28951 -20.72237 -18.93945 -18.77885 -18.08456 -17.27489 -16.89339 -16.44563 -15.98846 -15.73484 -15.14930 -14.96872 -14.78598 -14.61452 -14.43023 -14.28121 -13.98646 -13.76005 -13.55984 -13.24701 -12.97121 -12.79040 -12.61659 -12.33665 -12.11858 -12.01373 -11.72327 -11.65498 -11.26604 -11.18388 -10.96045 -10.81820 -10.61520 -10.53697 -10.21884 -10.16250 -10.12201 -9.66258 -9.30927 -8.98428 -8.46168 -8.33183 -7.81723 -6.07534 -4.11840 0.62054 1.75521 1.89288 2.34906 2.39761 3.11947 3.29934 3.38243 3.43774 3.51967 3.76595 3.82863 4.15387 4.41891 4.44274 4.48604 4.72545 4.73884 4.79805 4.89551 4.95707 5.12139 5.12962 5.26837 5.27787 5.29962 5.39018 5.48454 5.53855 5.62132 5.83408 5.87531 5.95327 6.12840 6.27376 6.35486 6.40876 6.67198 6.93211 7.30961 7.33861 7.42793 7.69714 7.84865 7.89154 8.18328 8.23071 8.77135 8.95545 9.53720 11.00650 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.003228 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.577870 B = 8671.680536 C = 9456.408550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.589 5.589 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.492 3.508 14 O -0.528 6.528 15 C 0.072 3.928 16 N -0.524 5.524 17 C 0.431 3.569 18 N -0.541 5.541 19 C 0.339 3.661 20 C -0.340 4.340 21 C 0.129 3.871 22 N -0.279 5.279 23 N -0.355 5.355 24 C 0.133 3.867 25 C -0.171 4.171 26 C 0.580 3.420 27 O -0.510 6.510 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.210 0.790 39 H 0.197 0.803 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -2.296 19.731 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.322 5.322 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.276 3.724 14 O -0.405 6.405 15 C -0.054 4.054 16 N -0.244 5.244 17 C 0.141 3.859 18 N -0.267 5.267 19 C 0.102 3.898 20 C -0.356 4.356 21 C -0.061 4.061 22 N -0.097 5.097 23 N -0.139 5.139 24 C 0.013 3.987 25 C -0.229 4.229 26 C 0.374 3.626 27 O -0.383 6.383 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.226 0.774 39 H 0.213 0.787 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.838 -0.632 20.759 22.571 hybrid contribution 1.253 -0.999 -1.505 2.199 sum -7.584 -1.631 19.254 20.758 Atomic orbital electron populations 1.22233 0.96450 1.01715 1.02372 1.21516 0.93645 0.83970 1.03218 1.48250 1.63186 1.13288 1.07431 1.19319 0.96515 0.93574 0.77704 1.21472 0.96852 1.31993 1.06280 0.92294 1.24921 0.97911 0.94826 0.96371 1.69935 1.35632 1.33477 1.14356 0.86449 0.84607 0.78166 0.78305 1.19665 1.20914 1.20867 1.20288 0.79675 0.87355 0.85120 1.90742 1.45138 1.17874 1.86732 1.22023 1.04407 0.94032 0.84910 1.46308 1.11340 1.36383 1.30386 1.24647 0.93972 0.81303 0.85952 1.67171 1.21083 1.24248 1.14169 1.19033 0.90064 0.91083 0.89625 1.21000 0.97030 1.10417 1.07128 1.23493 0.98841 0.93084 0.90644 1.77239 0.90191 1.18425 1.23862 1.48494 1.07338 1.32134 1.25913 1.21761 0.95625 0.86828 0.94514 1.22188 1.03307 0.95351 1.02021 1.17400 0.80947 0.82470 0.81804 1.90901 1.43064 1.42669 1.61674 0.91788 0.91866 0.93151 0.89438 0.91627 0.94693 0.93869 0.92759 0.85578 0.86152 0.77380 0.78663 0.88339 0.88556 0.91684 0.91620 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.24 37.16 0.38 -1.42 16 2 C 0.10 1.40 5.93 -4.04 -0.02 1.37 16 3 N -0.59 -11.46 2.46 -175.06 -0.43 -11.89 16 4 C 0.25 6.21 5.16 -5.19 -0.03 6.19 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 9 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.49 9.43 7.74 -10.99 -0.09 9.35 16 14 O -0.53 -12.88 16.01 5.55 0.09 -12.79 16 15 C 0.07 0.94 4.41 -5.19 -0.02 0.92 16 16 N -0.52 -7.43 2.09 -120.39 -0.25 -7.69 16 17 C 0.43 4.90 11.42 -90.13 -1.03 3.87 16 18 N -0.54 -6.95 10.38 -13.46 -0.14 -7.09 16 19 C 0.34 4.93 8.03 -155.96 -1.25 3.68 16 20 C -0.34 -5.48 6.39 -104.91 -0.67 -6.15 16 21 C 0.13 1.86 12.04 -17.20 -0.21 1.65 16 22 N -0.28 -3.93 12.47 30.74 0.38 -3.54 16 23 N -0.35 -4.65 3.63 -60.47 -0.22 -4.86 16 24 C 0.13 1.19 7.15 -4.04 -0.03 1.16 16 25 C -0.17 -1.44 10.24 37.16 0.38 -1.06 16 26 C 0.58 10.13 7.66 -12.76 -0.10 10.03 16 27 O -0.51 -10.45 16.86 5.07 0.09 -10.36 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.44 7.22 -51.93 -0.38 0.07 16 31 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.07 0.73 6.44 -51.93 -0.33 0.39 16 33 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.13 1.62 6.73 -51.93 -0.35 1.27 16 37 H 0.12 0.91 7.05 -51.93 -0.37 0.55 16 38 H 0.21 1.32 8.00 -52.49 -0.42 0.90 16 39 H 0.20 2.31 8.06 -52.48 -0.42 1.89 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -39.06 379.46 -8.15 -47.21 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.00 Total: -2.25 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: -3.10 Total: 16.04 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.08 Total: -60.76 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.17 Total: -23.15 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.06 -8.15 -47.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192485458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.578 kcal (2) G-P(sol) polarization free energy of solvation -39.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds