Wall clock time and date at job start Tue Mar 31 2020 18:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47181 * 2 1 4 4 C 1.46504 * 119.99625 * 270.00073 * 3 2 1 5 5 C 1.50697 * 109.46947 * 269.99726 * 4 3 2 6 6 H 1.07995 * 120.00124 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99997 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99958 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00078 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47056 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47175 * 119.99345 * 9 7 5 12 12 H 1.48501 * 109.46947 * 239.99341 * 9 7 5 13 13 C 1.34780 * 120.00105 * 89.99449 * 3 2 1 14 14 O 1.21284 * 119.99696 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00078 * 0.02562 * 13 3 2 16 16 N 1.46503 * 109.46938 * 179.97438 * 15 13 3 17 17 C 1.35689 * 119.86053 * 90.00426 * 16 15 13 18 18 N 1.30078 * 123.04822 * 180.27905 * 17 16 15 19 19 C 1.34234 * 121.87820 * 359.42732 * 18 17 16 20 20 C 1.40380 * 119.17435 * 0.57373 * 19 18 17 21 21 C 1.40736 * 107.26658 * 179.71943 * 20 19 18 22 22 N 1.30445 * 108.32359 * 359.97438 * 21 20 19 23 23 N 1.35825 * 134.23499 * 180.18938 * 19 18 17 24 24 C 1.46505 * 125.84034 * 0.39409 * 23 19 18 25 25 C 1.53003 * 109.47154 * 269.96815 * 24 23 19 26 26 C 1.35363 * 119.85849 * 270.02082 * 16 15 13 27 27 O 1.21834 * 121.25080 * 359.97438 * 26 16 15 28 28 H 1.08998 * 109.47039 * 60.00512 * 1 2 3 29 29 H 1.08998 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47399 * 300.00279 * 1 2 3 31 31 H 1.08992 * 109.47412 * 239.99880 * 2 1 3 32 32 H 1.08998 * 109.47039 * 119.99487 * 2 1 3 33 33 H 1.08997 * 109.46997 * 30.00093 * 4 3 2 34 34 H 1.09003 * 109.47148 * 149.99836 * 4 3 2 35 35 H 0.97000 * 119.99818 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.46677 * 59.99634 * 15 13 3 37 37 H 1.08997 * 109.47263 * 300.00063 * 15 13 3 38 38 H 1.08002 * 118.47220 * 359.97438 * 17 16 15 39 39 H 1.08008 * 125.83878 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.47419 * 29.96861 * 24 23 19 41 41 H 1.08996 * 109.47241 * 149.96882 * 24 23 19 42 42 H 1.08998 * 109.46995 * 300.00306 * 25 24 23 43 43 H 1.09003 * 109.46903 * 60.00297 * 25 24 23 44 44 H 1.09002 * 109.47008 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3904 -2.8775 8 7 3.3493 3.1264 -3.6177 9 14 5.9133 2.0962 -3.4171 10 1 6.6007 1.2403 -2.4170 11 1 5.9204 1.4179 -4.7381 12 1 6.6214 3.3971 -3.5249 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1671 15 6 1.9921 1.3061 2.4723 16 7 2.3099 2.2036 3.5858 17 6 1.3469 3.0097 4.0997 18 7 1.5618 3.8333 5.0834 19 6 2.7635 3.9357 5.6727 20 6 3.8233 3.1409 5.2082 21 6 4.9519 3.4513 5.9897 22 7 4.6105 4.3612 6.8598 23 7 3.2583 4.6850 6.6917 24 6 2.5061 5.6641 7.4804 25 6 2.6085 7.0395 6.8181 26 6 3.5630 2.2255 4.0973 27 8 4.4410 1.5092 3.6496 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.5816 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1385 35 1 3.6754 3.5168 -4.4436 36 1 2.6227 0.4189 2.5299 37 1 0.9443 1.0116 2.5302 38 1 0.3574 2.9690 3.6689 39 1 5.9331 3.0119 5.8861 40 1 1.4600 5.3626 7.5319 41 1 2.9198 5.7141 8.4876 42 1 3.6547 7.3410 6.7667 43 1 2.1948 6.9894 5.8109 44 1 2.0485 7.7678 7.4047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192485458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:59 Heat of formation + Delta-G solvation = 17.137604 kcal Electronic energy + Delta-G solvation = -28872.743604 eV Core-core repulsion = 24826.637242 eV Total energy + Delta-G solvation = -4046.106362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.23586 -41.50505 -40.24303 -38.62890 -37.02995 -35.58821 -35.52812 -34.88221 -31.65014 -31.06251 -30.94982 -30.11599 -28.32906 -25.80487 -25.35438 -24.77608 -24.24705 -23.61939 -21.73938 -20.35282 -19.82748 -19.15752 -18.72117 -18.41129 -18.14403 -17.14339 -17.10349 -16.53844 -16.24648 -16.05630 -15.89546 -15.63371 -15.46935 -15.08157 -14.76091 -14.72164 -14.53582 -14.44088 -13.99316 -13.64498 -13.49048 -13.36603 -13.20253 -13.04851 -13.02604 -12.70461 -12.56097 -12.50123 -12.17838 -12.09307 -11.85101 -11.73935 -11.70387 -11.48256 -11.19513 -10.68612 -10.67009 -10.14355 -9.50636 -9.47080 -8.26202 -6.39434 -0.37804 0.54756 0.94936 1.27953 1.31428 1.33843 1.34673 1.45987 1.68516 2.22734 2.35998 2.55885 2.88549 3.03768 3.12808 3.43909 3.53362 3.63869 3.87468 3.98737 4.04147 4.10428 4.15665 4.23476 4.30499 4.34621 4.48950 4.68036 4.70924 4.77904 4.93354 5.01831 5.06861 5.12879 5.15072 5.20835 5.22699 5.35125 5.50154 5.56213 5.70029 5.82081 6.04502 6.24303 6.59074 6.67374 6.67557 6.74828 7.23908 7.39004 8.80531 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.003228 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.577870 B = 8671.680536 C = 9456.408550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.091 3.909 3 N -0.594 5.594 4 C 0.265 3.735 5 C -0.544 4.544 6 H 0.046 0.954 7 C 0.011 3.989 8 N -0.924 5.924 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.264 1.264 12 H -0.283 1.283 13 C 0.483 3.517 14 O -0.592 6.592 15 C 0.087 3.913 16 N -0.526 5.526 17 C 0.435 3.565 18 N -0.542 5.542 19 C 0.336 3.664 20 C -0.376 4.376 21 C 0.120 3.880 22 N -0.286 5.286 23 N -0.353 5.353 24 C 0.124 3.876 25 C -0.164 4.164 26 C 0.569 3.431 27 O -0.556 6.556 28 H 0.038 0.962 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.030 0.970 34 H -0.001 1.001 35 H 0.267 0.733 36 H 0.133 0.867 37 H 0.190 0.810 38 H 0.266 0.734 39 H 0.210 0.790 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.049 0.951 43 H 0.044 0.956 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 -3.428 21.371 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.143 3.857 5 C -0.582 4.582 6 H 0.064 0.936 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.189 1.189 12 H -0.209 1.209 13 C 0.270 3.730 14 O -0.473 6.473 15 C -0.038 4.038 16 N -0.245 5.245 17 C 0.147 3.853 18 N -0.268 5.268 19 C 0.098 3.902 20 C -0.392 4.392 21 C -0.070 4.070 22 N -0.105 5.105 23 N -0.137 5.137 24 C 0.005 3.995 25 C -0.222 4.222 26 C 0.365 3.635 27 O -0.433 6.433 28 H 0.057 0.943 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.048 0.952 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.150 0.850 37 H 0.207 0.793 38 H 0.281 0.719 39 H 0.227 0.773 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.817 -1.790 22.431 24.967 hybrid contribution 1.787 -0.585 -1.983 2.733 sum -9.030 -2.375 20.447 22.478 Atomic orbital electron populations 1.22177 0.93301 1.03878 1.02541 1.21901 0.96190 0.80742 1.04209 1.48240 1.63221 1.15233 1.05825 1.18694 0.94863 0.91667 0.80428 1.21749 0.98278 1.31844 1.06367 0.93610 1.25746 1.01913 0.94581 0.96548 1.70027 1.37388 1.34159 1.14808 0.85500 0.79656 0.77959 0.78519 1.19786 1.18874 1.20933 1.21364 0.77997 0.86821 0.86840 1.90711 1.47832 1.20924 1.87868 1.22166 1.08493 0.92498 0.80642 1.46349 1.10811 1.37037 1.30344 1.25848 0.95096 0.79470 0.84879 1.67283 1.20025 1.24694 1.14764 1.19285 0.90305 0.90813 0.89811 1.21231 0.98420 1.11592 1.07950 1.23790 0.99397 0.93225 0.90539 1.77181 0.91108 1.18297 1.23867 1.48894 1.07049 1.32107 1.25656 1.22175 0.96342 0.86030 0.94917 1.22151 1.02682 0.95950 1.01417 1.17749 0.81653 0.82120 0.81980 1.90854 1.44686 1.44561 1.63234 0.94288 0.88617 0.90377 0.91280 0.87919 0.95230 0.98306 0.92386 0.84961 0.79297 0.71903 0.77315 0.86499 0.86538 0.93153 0.93650 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.24 71.98 0.74 -2.11 16 2 C 0.09 2.35 5.93 86.38 0.51 2.86 16 3 N -0.59 -23.01 2.46 -826.16 -2.03 -25.04 16 4 C 0.26 13.82 5.16 85.63 0.44 14.26 16 5 C -0.54 -31.73 9.39 25.60 0.24 -31.49 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.67 5.46 84.65 0.46 1.13 16 8 N -0.92 -55.89 13.29 21.45 0.28 -55.61 16 9 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 10 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 13 C 0.48 18.26 7.74 87.66 0.68 18.93 16 14 O -0.59 -29.70 16.01 -3.04 -0.05 -29.75 16 15 C 0.09 2.00 4.41 85.63 0.38 2.37 16 16 N -0.53 -13.97 2.09 -652.62 -1.36 -15.33 16 17 C 0.43 8.60 11.42 180.18 2.06 10.66 16 18 N -0.54 -12.82 10.38 -196.50 -2.04 -14.86 16 19 C 0.34 9.52 8.03 133.86 1.07 10.59 16 20 C -0.38 -12.26 6.39 -20.05 -0.13 -12.39 16 21 C 0.12 3.54 12.04 85.51 1.03 4.57 16 22 N -0.29 -8.02 12.47 -56.65 -0.71 -8.73 16 23 N -0.35 -8.93 3.63 -345.23 -1.25 -10.18 16 24 C 0.12 1.97 7.15 86.38 0.62 2.59 16 25 C -0.16 -2.54 10.24 71.98 0.74 -1.80 16 26 C 0.57 19.99 7.66 86.24 0.66 20.65 16 27 O -0.56 -23.42 16.86 -4.78 -0.08 -23.50 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 0.95 7.22 -2.39 -0.02 0.94 16 31 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 32 H 0.10 1.89 6.44 -2.39 -0.02 1.88 16 33 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 34 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 35 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.13 3.02 6.73 -2.39 -0.02 3.00 16 37 H 0.19 1.67 7.05 -2.39 -0.02 1.65 16 38 H 0.27 1.92 8.00 -2.91 -0.02 1.89 16 39 H 0.21 5.18 8.06 -2.91 -0.02 5.15 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -93.12 379.46 5.31 -87.80 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.02 Total: 6.01 kcal Atomic # 6 Polarization: 31.33 SS G_CDS: 9.50 Total: 40.83 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -7.11 Total: -129.75 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.13 Total: -53.25 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -93.12 5.31 -87.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192485458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.942 kcal (2) G-P(sol) polarization free energy of solvation -93.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds