Wall clock time and date at job start Tue Mar 31 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.46899 * 2 1 4 4 C 1.46496 * 119.99747 * 267.47675 * 3 2 1 5 5 C 1.50701 * 109.47214 * 263.51155 * 4 3 2 6 6 H 1.07994 * 120.00025 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99847 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00047 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99968 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47011 * 59.99745 * 9 7 5 11 11 H 1.48497 * 109.47167 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46627 * 299.99407 * 9 7 5 13 13 C 1.34774 * 119.99955 * 87.48171 * 3 2 1 14 14 O 1.21597 * 120.00242 * 4.24337 * 13 3 2 15 15 C 1.47520 * 119.99644 * 184.24657 * 13 3 2 16 16 N 1.34401 * 125.77539 * 354.35166 * 15 13 3 17 17 N 1.28758 * 109.52699 * 179.74685 * 16 15 13 18 18 N 1.40217 * 108.36284 * 0.39275 * 17 16 15 19 19 C 1.46503 * 126.58959 * 179.87164 * 18 17 16 20 20 C 1.50700 * 109.47464 * 269.68748 * 19 18 17 21 21 C 1.35451 * 126.77753 * 89.99852 * 20 19 18 22 22 C 1.41380 * 103.98452 * 180.22611 * 21 20 19 23 23 C 1.50698 * 126.80040 * 179.77575 * 22 21 20 24 24 N 1.30175 * 106.39662 * 359.63732 * 22 21 20 25 25 O 1.20928 * 111.60492 * 0.38972 * 24 22 21 26 26 C 1.34803 * 106.81228 * 359.61061 * 18 17 16 27 27 C 1.50704 * 126.58028 * 180.19034 * 26 18 17 28 28 H 1.08997 * 109.46485 * 60.00352 * 1 2 3 29 29 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46980 * 300.00355 * 1 2 3 31 31 H 1.08999 * 109.46980 * 239.99645 * 2 1 3 32 32 H 1.09000 * 109.46951 * 119.99448 * 2 1 3 33 33 H 1.09003 * 109.47228 * 23.51010 * 4 3 2 34 34 H 1.08998 * 109.47011 * 143.50602 * 4 3 2 35 35 H 0.96997 * 120.00043 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46662 * 149.68457 * 19 18 17 37 37 H 1.09001 * 109.47039 * 29.68844 * 19 18 17 38 38 H 1.08002 * 128.00523 * 359.96774 * 21 20 19 39 39 H 1.08998 * 109.47271 * 90.00281 * 23 22 21 40 40 H 1.09005 * 109.47022 * 210.00299 * 23 22 21 41 41 H 1.09003 * 109.46985 * 329.99672 * 23 22 21 42 42 H 1.08996 * 109.46960 * 89.99938 * 27 26 18 43 43 H 1.09003 * 109.47034 * 210.00042 * 27 26 18 44 44 H 1.09000 * 109.47290 * 329.99995 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3151 2.0532 -1.2675 5 6 3.7896 1.9458 -1.5598 6 1 4.4405 1.4284 -0.8706 7 6 4.3077 2.5082 -2.7072 8 7 3.5150 3.1378 -3.5467 9 14 6.1353 2.3745 -3.0699 10 1 6.5170 0.9428 -3.1680 11 1 6.4361 3.0557 -4.3546 12 1 6.9054 3.0183 -1.9755 13 6 2.1946 2.0337 1.1661 14 8 2.0226 1.4523 2.2201 15 6 2.5961 3.4532 1.1636 16 7 2.9198 4.1763 0.0779 17 7 3.2148 5.3781 0.4335 18 7 3.0928 5.4689 1.8274 19 6 3.3372 6.6563 2.6499 20 6 4.7807 6.6795 3.0823 21 6 5.8151 7.2557 2.4246 22 6 6.9343 6.9865 3.2454 23 6 8.3615 7.3969 2.9888 24 7 6.4874 6.3167 4.2682 25 8 5.2943 6.1338 4.1937 26 6 2.7017 4.2551 2.2644 27 6 2.4333 3.8586 3.6934 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7502 1.5800 -2.0706 34 1 2.0344 3.1040 -1.1961 35 1 3.8795 3.5337 -4.3537 36 1 2.6947 6.6272 3.5299 37 1 3.1175 7.5521 2.0691 38 1 5.7912 7.7924 1.4877 39 1 8.5443 8.3744 3.4350 40 1 9.0356 6.6635 3.4316 41 1 8.5369 7.4493 1.9143 42 1 1.3852 4.0412 3.9303 43 1 2.6564 2.7997 3.8246 44 1 3.0642 4.4480 4.3586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292405654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:27 Heat of formation + Delta-G solvation = 134.772040 kcal Electronic energy + Delta-G solvation = -29298.575985 eV Core-core repulsion = 25257.570635 eV Total energy + Delta-G solvation = -4041.005350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.16903 -41.75390 -38.72860 -35.55327 -35.15506 -34.94339 -32.61592 -32.52201 -31.48043 -30.29193 -28.92585 -27.62241 -27.19683 -26.72139 -23.63836 -23.30942 -22.88387 -22.01038 -21.00393 -20.07465 -18.80259 -17.91139 -17.64622 -16.81901 -16.33101 -15.84680 -15.55651 -15.42052 -14.75525 -14.44740 -14.23841 -13.87997 -13.74353 -13.60962 -13.45659 -13.32202 -13.13758 -12.86381 -12.74530 -12.64930 -12.48238 -12.22070 -11.88965 -11.67752 -11.53378 -11.39359 -11.14139 -10.84538 -10.77313 -10.43260 -10.24178 -10.13263 -9.99105 -9.80070 -9.67030 -9.51512 -9.17002 -8.62237 -8.27054 -7.59245 -5.93281 -3.94820 0.97074 1.50218 1.94411 2.48039 2.49226 2.80055 3.36290 3.39721 3.43573 3.89454 3.95098 4.01665 4.05456 4.41960 4.52613 4.60940 4.74065 4.81829 5.00799 5.03240 5.18783 5.22186 5.23178 5.42775 5.45789 5.52184 5.55767 5.61652 5.69492 5.85357 5.86624 5.92728 5.94750 6.10898 6.25636 6.30768 6.49553 6.67803 6.72122 6.93205 7.56906 7.77975 7.98416 7.99779 8.33879 8.37560 8.61480 8.99312 9.10048 9.67696 11.15024 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.004600 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.305078 B = 6084.853276 C = 7950.395698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.580 5.580 4 C 0.228 3.772 5 C -0.514 4.514 6 H 0.051 0.949 7 C 0.073 3.927 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.280 1.280 13 C 0.600 3.400 14 O -0.574 6.574 15 C -0.089 4.089 16 N -0.125 5.125 17 N -0.080 5.080 18 N -0.384 5.384 19 C 0.214 3.786 20 C -0.066 4.066 21 C -0.190 4.190 22 C 0.013 3.987 23 C -0.076 4.076 24 N -0.357 5.357 25 O 0.108 5.892 26 C 0.111 3.889 27 C -0.094 4.094 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.178 0.822 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 9.188 13.410 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.308 5.308 4 C 0.108 3.892 5 C -0.553 4.553 6 H 0.069 0.931 7 C -0.129 4.129 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.206 1.206 13 C 0.387 3.613 14 O -0.456 6.456 15 C -0.226 4.226 16 N 0.002 4.998 17 N -0.058 5.058 18 N -0.170 5.170 19 C 0.091 3.909 20 C -0.130 4.130 21 C -0.212 4.212 22 C -0.145 4.145 23 C -0.134 4.134 24 N -0.059 5.059 25 O 0.039 5.961 26 C -0.025 4.025 27 C -0.153 4.153 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.155 0.845 38 H 0.195 0.805 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.052 9.237 13.532 16.384 hybrid contribution 0.952 0.065 -0.365 1.022 sum 1.005 9.302 13.167 16.152 Atomic orbital electron populations 1.22118 0.96754 1.01253 1.02015 1.21296 0.93428 0.83497 1.02643 1.48172 1.61448 1.13117 1.08112 1.19901 0.96329 0.94760 0.78172 1.21216 0.92960 1.35203 1.05951 0.93114 1.24744 0.97147 0.94974 0.96046 1.69902 1.34711 1.36125 1.11810 0.86757 0.86344 0.78057 0.77375 1.20444 1.21243 1.20630 1.16733 0.77048 0.83595 0.83941 1.90632 1.55723 1.67873 1.31330 1.21246 1.15168 0.97483 0.88711 1.75344 1.04715 0.96931 1.22842 1.82188 1.23132 1.14793 0.85726 1.50424 1.49184 1.08671 1.08748 1.19961 0.87544 0.87992 0.95431 1.24461 0.98094 1.00491 0.89979 1.22600 0.90589 1.05335 1.02690 1.23661 0.99306 0.99502 0.92036 1.20192 0.87725 1.02044 1.03428 1.73839 0.91889 1.17536 1.22668 1.84822 1.16497 1.57825 1.36922 1.21803 0.97151 0.85359 0.98168 1.20676 1.02532 1.05447 0.86628 0.92524 0.92349 0.92798 0.90291 0.91005 0.95207 0.91099 0.92942 0.86190 0.84517 0.80486 0.90055 0.90433 0.89721 0.89553 0.86951 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.23 37.16 0.38 -2.20 16 2 C 0.11 2.15 6.10 -4.04 -0.02 2.13 16 3 N -0.58 -12.94 2.48 -176.29 -0.44 -13.38 16 4 C 0.23 5.78 4.75 -5.20 -0.02 5.76 16 5 C -0.51 -14.25 8.42 -34.44 -0.29 -14.54 16 6 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 8 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.60 13.23 7.60 -12.48 -0.09 13.14 16 14 O -0.57 -12.48 14.29 5.28 0.08 -12.40 16 15 C -0.09 -1.87 6.69 -83.55 -0.56 -2.43 16 16 N -0.13 -2.89 8.09 32.85 0.27 -2.62 16 17 N -0.08 -1.60 13.78 60.35 0.83 -0.76 16 18 N -0.38 -5.86 3.62 -58.02 -0.21 -6.07 16 19 C 0.21 2.05 6.71 -5.19 -0.03 2.02 16 20 C -0.07 -0.75 7.07 -35.30 -0.25 -1.00 16 21 C -0.19 -2.18 11.06 -39.38 -0.44 -2.61 16 22 C 0.01 0.16 7.33 -82.10 -0.60 -0.44 16 23 C -0.08 -0.68 10.47 36.00 0.38 -0.30 16 24 N -0.36 -4.95 12.07 33.42 0.40 -4.55 16 25 O 0.11 1.40 11.20 17.17 0.19 1.60 16 26 C 0.11 1.85 7.02 -81.88 -0.57 1.28 16 27 C -0.09 -1.19 9.44 36.01 0.34 -0.85 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.45 8.05 -51.93 -0.42 1.04 16 32 H 0.07 1.33 7.44 -51.93 -0.39 0.94 16 33 H 0.03 0.78 8.02 -51.93 -0.42 0.37 16 34 H 0.07 1.91 5.26 -51.93 -0.27 1.63 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.12 0.73 7.77 -51.93 -0.40 0.33 16 37 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.11 1.67 6.33 -51.93 -0.33 1.34 16 44 H 0.07 0.72 7.83 -51.93 -0.41 0.31 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -34.73 378.02 -5.34 -40.06 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.98 Total: -1.63 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -1.89 Total: 1.90 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 1.59 Total: -52.29 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.27 Total: -10.81 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.73 -5.34 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292405654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.836 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds