Wall clock time and date at job start Tue Mar 31 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.46899 * 2 1 4 4 C 1.46496 * 119.99747 * 267.47675 * 3 2 1 5 5 C 1.50701 * 109.47214 * 263.51155 * 4 3 2 6 6 H 1.07994 * 120.00025 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99847 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00047 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99968 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47011 * 59.99745 * 9 7 5 11 11 H 1.48497 * 109.47167 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46627 * 299.99407 * 9 7 5 13 13 C 1.34774 * 119.99955 * 87.48171 * 3 2 1 14 14 O 1.21597 * 120.00242 * 4.24337 * 13 3 2 15 15 C 1.47520 * 119.99644 * 184.24657 * 13 3 2 16 16 N 1.34401 * 125.77539 * 354.35166 * 15 13 3 17 17 N 1.28758 * 109.52699 * 179.74685 * 16 15 13 18 18 N 1.40217 * 108.36284 * 0.39275 * 17 16 15 19 19 C 1.46503 * 126.58959 * 179.87164 * 18 17 16 20 20 C 1.50700 * 109.47464 * 269.68748 * 19 18 17 21 21 C 1.35451 * 126.77753 * 89.99852 * 20 19 18 22 22 C 1.41380 * 103.98452 * 180.22611 * 21 20 19 23 23 C 1.50698 * 126.80040 * 179.77575 * 22 21 20 24 24 N 1.30175 * 106.39662 * 359.63732 * 22 21 20 25 25 O 1.20928 * 111.60492 * 0.38972 * 24 22 21 26 26 C 1.34803 * 106.81228 * 359.61061 * 18 17 16 27 27 C 1.50704 * 126.58028 * 180.19034 * 26 18 17 28 28 H 1.08997 * 109.46485 * 60.00352 * 1 2 3 29 29 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46980 * 300.00355 * 1 2 3 31 31 H 1.08999 * 109.46980 * 239.99645 * 2 1 3 32 32 H 1.09000 * 109.46951 * 119.99448 * 2 1 3 33 33 H 1.09003 * 109.47228 * 23.51010 * 4 3 2 34 34 H 1.08998 * 109.47011 * 143.50602 * 4 3 2 35 35 H 0.96997 * 120.00043 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46662 * 149.68457 * 19 18 17 37 37 H 1.09001 * 109.47039 * 29.68844 * 19 18 17 38 38 H 1.08002 * 128.00523 * 359.96774 * 21 20 19 39 39 H 1.08998 * 109.47271 * 90.00281 * 23 22 21 40 40 H 1.09005 * 109.47022 * 210.00299 * 23 22 21 41 41 H 1.09003 * 109.46985 * 329.99672 * 23 22 21 42 42 H 1.08996 * 109.46960 * 89.99938 * 27 26 18 43 43 H 1.09003 * 109.47034 * 210.00042 * 27 26 18 44 44 H 1.09000 * 109.47290 * 329.99995 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3151 2.0532 -1.2675 5 6 3.7896 1.9458 -1.5598 6 1 4.4405 1.4284 -0.8706 7 6 4.3077 2.5082 -2.7072 8 7 3.5150 3.1378 -3.5467 9 14 6.1353 2.3745 -3.0699 10 1 6.5170 0.9428 -3.1680 11 1 6.4361 3.0557 -4.3546 12 1 6.9054 3.0183 -1.9755 13 6 2.1946 2.0337 1.1661 14 8 2.0226 1.4523 2.2201 15 6 2.5961 3.4532 1.1636 16 7 2.9198 4.1763 0.0779 17 7 3.2148 5.3781 0.4335 18 7 3.0928 5.4689 1.8274 19 6 3.3372 6.6563 2.6499 20 6 4.7807 6.6795 3.0823 21 6 5.8151 7.2557 2.4246 22 6 6.9343 6.9865 3.2454 23 6 8.3615 7.3969 2.9888 24 7 6.4874 6.3167 4.2682 25 8 5.2943 6.1338 4.1937 26 6 2.7017 4.2551 2.2644 27 6 2.4333 3.8586 3.6934 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7502 1.5800 -2.0706 34 1 2.0344 3.1040 -1.1961 35 1 3.8795 3.5337 -4.3537 36 1 2.6947 6.6272 3.5299 37 1 3.1175 7.5521 2.0691 38 1 5.7912 7.7924 1.4877 39 1 8.5443 8.3744 3.4350 40 1 9.0356 6.6635 3.4316 41 1 8.5369 7.4493 1.9143 42 1 1.3852 4.0412 3.9303 43 1 2.6564 2.7997 3.8246 44 1 3.0642 4.4480 4.3586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292405654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:26 Heat of formation + Delta-G solvation = 112.359575 kcal Electronic energy + Delta-G solvation = -29299.547862 eV Core-core repulsion = 25257.570635 eV Total energy + Delta-G solvation = -4041.977228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.09578 -43.15949 -40.38054 -37.02356 -36.48593 -35.86247 -34.62673 -33.71056 -32.82077 -31.72200 -29.70928 -29.08554 -28.57825 -28.15988 -25.16147 -24.79141 -24.26653 -23.42786 -22.24405 -21.09147 -20.31677 -18.97800 -18.77123 -18.44723 -18.01350 -17.17511 -17.07086 -16.87683 -16.27742 -16.02019 -15.47939 -15.17550 -14.98845 -14.85135 -14.41525 -14.28764 -14.19826 -14.16678 -14.04327 -13.84583 -13.59974 -13.55679 -13.37777 -13.28763 -13.07949 -12.82109 -12.67451 -12.52208 -12.21347 -12.13031 -11.80652 -11.68459 -11.42086 -11.23295 -11.08149 -10.87358 -10.69492 -10.38945 -10.06966 -9.36660 -8.07426 -6.15183 -0.02901 0.25320 0.89043 1.02043 1.36154 1.37222 1.43429 1.44576 1.92167 2.29065 2.41674 2.49369 3.12465 3.19416 3.24955 3.38942 3.51664 3.69779 3.81459 3.90483 4.03505 4.21018 4.28090 4.31114 4.44157 4.48236 4.58308 4.60068 4.67477 4.70440 4.76618 4.77878 4.86335 4.87272 5.02320 5.10526 5.12109 5.13384 5.32547 5.52293 5.56981 5.84027 5.94757 6.23702 6.56424 6.89078 7.09558 7.13934 7.37007 7.51338 8.99690 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.004600 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.305078 B = 6084.853276 C = 7950.395698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.108 3.892 3 N -0.590 5.590 4 C 0.247 3.753 5 C -0.517 4.517 6 H 0.033 0.967 7 C 0.033 3.967 8 N -0.912 5.912 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.288 1.288 13 C 0.595 3.405 14 O -0.577 6.577 15 C -0.132 4.132 16 N -0.173 5.173 17 N -0.102 5.102 18 N -0.364 5.364 19 C 0.204 3.796 20 C -0.067 4.067 21 C -0.199 4.199 22 C 0.003 3.997 23 C -0.078 4.078 24 N -0.386 5.386 25 O 0.100 5.900 26 C 0.133 3.867 27 C -0.090 4.090 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.013 0.987 34 H 0.059 0.941 35 H 0.263 0.737 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.193 0.807 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.091 0.909 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 10.254 14.917 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.319 5.319 4 C 0.126 3.874 5 C -0.556 4.556 6 H 0.051 0.949 7 C -0.167 4.167 8 N -0.551 5.551 9 Si 0.765 3.235 10 H -0.197 1.197 11 H -0.201 1.201 12 H -0.214 1.214 13 C 0.383 3.617 14 O -0.459 6.459 15 C -0.270 4.270 16 N -0.045 5.045 17 N -0.080 5.080 18 N -0.151 5.151 19 C 0.084 3.916 20 C -0.132 4.132 21 C -0.221 4.221 22 C -0.154 4.154 23 C -0.135 4.135 24 N -0.090 5.090 25 O 0.033 5.967 26 C -0.006 4.006 27 C -0.148 4.148 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.210 0.790 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.135 0.865 43 H 0.110 0.890 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.079 10.312 15.045 18.240 hybrid contribution 0.962 -0.188 -0.690 1.198 sum 1.041 10.123 14.355 17.596 Atomic orbital electron populations 1.22013 0.94314 1.03198 1.01359 1.21505 0.95452 0.81905 1.02593 1.48185 1.62110 1.14305 1.07312 1.19452 0.94746 0.94234 0.79003 1.21297 0.93944 1.34794 1.05587 0.94889 1.25342 1.00587 0.94783 0.95987 1.69989 1.36138 1.36845 1.12164 0.85935 0.82052 0.78311 0.77183 1.19653 1.20146 1.21382 1.16971 0.76762 0.84294 0.83723 1.90608 1.56052 1.68264 1.31010 1.21418 1.17868 0.97680 0.90061 1.75277 1.06372 0.98168 1.24714 1.82015 1.23793 1.13871 0.88353 1.50659 1.47012 1.09733 1.07680 1.20695 0.87360 0.86792 0.96786 1.24727 0.98779 1.00073 0.89594 1.22943 0.90531 1.05481 1.03152 1.24232 1.00847 0.98758 0.91607 1.20337 0.85895 1.03000 1.04253 1.73829 0.92440 1.18846 1.23912 1.84778 1.16301 1.58093 1.37520 1.22310 0.94515 0.84926 0.98809 1.20821 1.05060 1.04564 0.84356 0.93217 0.89071 0.93292 0.90518 0.90787 0.96865 0.92344 0.92831 0.81670 0.81575 0.78994 0.87917 0.90719 0.88761 0.86521 0.89003 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 10.23 71.98 0.74 -3.93 16 2 C 0.11 4.07 6.10 86.38 0.53 4.60 16 3 N -0.59 -26.98 2.48 -829.92 -2.06 -29.04 16 4 C 0.25 12.95 4.75 85.63 0.41 13.36 16 5 C -0.52 -29.44 8.42 25.60 0.22 -29.23 16 6 H 0.03 1.95 7.81 -2.91 -0.02 1.93 16 7 C 0.03 1.89 5.46 84.65 0.46 2.35 16 8 N -0.91 -53.63 13.29 21.45 0.28 -53.34 16 9 Si 0.94 45.71 29.54 68.60 2.03 47.74 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 13 C 0.59 26.60 7.60 86.69 0.66 27.26 16 14 O -0.58 -25.04 14.29 -4.02 -0.06 -25.10 16 15 C -0.13 -5.60 6.69 40.82 0.27 -5.33 16 16 N -0.17 -8.13 8.09 -49.99 -0.40 -8.54 16 17 N -0.10 -4.05 13.78 37.02 0.51 -3.54 16 18 N -0.36 -10.41 3.62 -337.47 -1.22 -11.63 16 19 C 0.20 3.19 6.71 85.63 0.57 3.77 16 20 C -0.07 -1.37 7.07 25.04 0.18 -1.19 16 21 C -0.20 -4.19 11.06 22.40 0.25 -3.95 16 22 C 0.00 0.08 7.33 43.58 0.32 0.40 16 23 C -0.08 -1.25 10.47 71.24 0.75 -0.50 16 24 N -0.39 -10.24 12.07 -49.54 -0.60 -10.84 16 25 O 0.10 2.41 11.20 71.61 0.80 3.21 16 26 C 0.13 4.21 7.02 41.72 0.29 4.51 16 27 C -0.09 -2.01 9.44 71.24 0.67 -1.34 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 2.88 8.05 -2.39 -0.02 2.86 16 32 H 0.07 2.73 7.44 -2.39 -0.02 2.72 16 33 H 0.01 0.73 8.02 -2.39 -0.02 0.71 16 34 H 0.06 3.28 5.26 -2.39 -0.01 3.27 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.17 1.16 7.77 -2.39 -0.02 1.14 16 37 H 0.17 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.09 2.56 6.33 -2.39 -0.02 2.55 16 44 H 0.10 1.66 7.83 -2.39 -0.02 1.64 16 Total: -1.00 -78.12 378.02 6.62 -71.50 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.03 Total: 8.82 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 6.31 Total: 10.76 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -3.48 Total: -116.93 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.74 Total: -21.89 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -78.12 6.62 -71.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292405654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.858 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds