Wall clock time and date at job start Tue Mar 31 2020 17:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46668 * 2 1 4 4 C 1.53000 * 109.47219 * 120.00109 * 2 1 3 5 5 C 1.50697 * 109.47149 * 185.00088 * 4 2 1 6 6 C 1.34244 * 126.49355 * 265.02509 * 5 4 2 7 7 N 1.36815 * 109.93068 * 179.97438 * 6 5 4 8 8 C 1.46499 * 125.06872 * 180.02562 * 7 6 5 9 9 C 1.37817 * 109.85886 * 0.26037 * 7 6 5 10 10 C 1.39099 * 133.38996 * 179.74095 * 9 7 6 11 11 C 1.37712 * 119.95166 * 180.02562 * 10 9 7 12 12 C 1.39031 * 120.65071 * 0.02562 * 11 10 9 13 13 F 1.35096 * 119.83672 * 179.97438 * 12 11 10 14 14 C 1.37809 * 120.33153 * 359.54042 * 12 11 10 15 15 C 1.39670 * 119.62252 * 0.69332 * 14 12 11 16 16 N 1.46501 * 109.46777 * 239.99915 * 2 1 3 17 17 C 1.34783 * 119.99951 * 85.00158 * 16 2 1 18 18 O 1.21581 * 119.99651 * 359.97438 * 17 16 2 19 19 N 1.34771 * 119.99779 * 179.97438 * 17 16 2 20 20 C 1.46503 * 119.99825 * 179.97438 * 19 17 16 21 21 C 1.50700 * 109.46964 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00101 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99650 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99667 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00355 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47484 * 89.99960 * 25 23 21 27 27 H 1.48496 * 109.47566 * 209.99837 * 25 23 21 28 28 H 1.48498 * 109.47278 * 330.00052 * 25 23 21 29 29 H 1.08999 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47286 * 299.99752 * 1 2 3 31 31 H 1.09001 * 109.47005 * 60.00039 * 1 2 3 32 32 H 1.09003 * 109.47236 * 64.99538 * 4 2 1 33 33 H 1.09007 * 109.46909 * 304.99845 * 4 2 1 34 34 H 1.07994 * 125.03241 * 359.95249 * 6 5 4 35 35 H 1.09002 * 109.47391 * 90.01932 * 8 7 6 36 36 H 1.09001 * 109.46813 * 330.01989 * 8 7 6 37 37 H 1.09004 * 109.47041 * 210.02116 * 8 7 6 38 38 H 1.07998 * 120.02329 * 0.02562 * 10 9 7 39 39 H 1.07995 * 119.67717 * 179.97438 * 11 10 9 40 40 H 1.07999 * 120.18395 * 179.97438 * 14 12 11 41 41 H 0.96995 * 119.99860 * 264.99580 * 16 2 1 42 42 H 0.97004 * 120.00185 * 0.02562 * 19 17 16 43 43 H 1.08995 * 109.47161 * 300.00212 * 20 19 17 44 44 H 1.08998 * 109.46914 * 60.00243 * 20 19 17 45 45 H 0.97004 * 119.99484 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 6 4.4261 -1.5196 0.8634 7 7 5.7011 -1.0795 1.0926 8 6 6.9203 -1.8079 0.7334 9 6 5.6672 0.1489 1.7166 10 6 6.6542 1.0188 2.1681 11 6 6.3014 2.2067 2.7690 12 6 4.9637 2.5489 2.9314 13 9 4.6361 3.7181 3.5237 14 6 3.9702 1.7055 2.4833 15 6 4.3137 0.4953 1.8765 16 7 2.0183 -0.6906 -1.1962 17 6 2.1470 -0.0183 -2.3572 18 8 1.8574 1.1613 -2.4118 19 7 2.5966 -0.6535 -3.4575 20 6 2.7360 0.0772 -4.7196 21 6 3.2525 -0.8549 -5.7852 22 1 3.4562 -1.8883 -5.5463 23 6 3.4641 -0.3886 -7.0654 24 7 3.9154 -1.2019 -7.9952 25 14 3.1112 1.3985 -7.4787 26 1 4.3328 2.2107 -7.2476 27 1 2.7072 1.5067 -8.9036 28 1 2.0130 1.8992 -6.6136 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 4.1690 -2.4563 0.3912 35 1 7.2285 -1.5263 -0.2735 36 1 6.7264 -2.8800 0.7676 37 1 7.7132 -1.5593 1.4390 38 1 7.6965 0.7629 2.0474 39 1 7.0713 2.8786 3.1182 40 1 2.9318 1.9735 2.6111 41 1 2.2490 -1.6318 -1.1526 42 1 2.8273 -1.5947 -3.4139 43 1 1.7651 0.4705 -5.0209 44 1 3.4366 0.9015 -4.5867 45 1 4.0646 -0.8737 -8.8958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413491315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:33 Heat of formation + Delta-G solvation = -21.892452 kcal Electronic energy + Delta-G solvation = -28258.705407 eV Core-core repulsion = 24190.986613 eV Total energy + Delta-G solvation = -4067.718794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.84550 -41.55756 -39.36178 -36.97861 -36.26787 -34.13304 -33.30810 -32.36056 -30.87602 -30.28923 -29.33501 -27.83116 -27.49186 -25.06994 -23.16055 -22.57688 -21.79203 -21.01002 -20.14690 -19.76250 -18.19860 -17.48926 -17.18442 -16.46369 -16.29249 -16.01001 -15.72420 -15.30531 -15.18738 -14.84025 -14.52136 -14.33778 -13.96301 -13.80748 -13.45562 -13.38785 -13.18683 -12.99667 -12.87689 -12.76371 -12.64319 -12.35530 -12.30113 -11.97048 -11.91377 -11.55539 -11.20396 -10.97174 -10.93739 -10.81760 -10.72109 -9.93456 -9.74684 -9.49915 -9.40180 -8.77160 -8.70210 -8.29127 -7.94389 -7.70320 -6.19580 -4.20892 0.81805 1.26027 2.45461 2.58692 3.28943 3.33879 3.40934 3.46202 3.55289 3.92869 4.15432 4.36370 4.37740 4.44312 4.60417 4.70828 4.89709 4.92161 4.98587 4.99653 5.12118 5.16528 5.19685 5.21749 5.34029 5.42296 5.55764 5.59713 5.66431 5.73512 5.82536 5.87635 6.04441 6.07818 6.23497 6.36889 6.53346 6.59730 6.80554 6.95376 6.98085 7.07343 7.16408 7.30605 7.47605 7.65902 8.31927 8.73581 8.87709 9.31040 9.44632 10.92423 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.003044 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.983501 B = 9197.514268 C = 9548.642521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.166 3.834 3 H 0.086 0.914 4 C -0.051 4.051 5 C -0.163 4.163 6 C 0.067 3.933 7 N -0.484 5.484 8 C 0.077 3.923 9 C 0.088 3.912 10 C -0.099 4.099 11 C -0.134 4.134 12 C 0.066 3.934 13 F -0.144 7.144 14 C -0.102 4.102 15 C -0.074 4.074 16 N -0.745 5.745 17 C 0.696 3.304 18 O -0.603 6.603 19 N -0.725 5.725 20 C 0.239 3.761 21 C -0.540 4.540 22 H 0.078 0.922 23 C 0.077 3.923 24 N -0.895 5.895 25 Si 0.876 3.124 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.260 1.260 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.168 0.832 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.388 0.612 42 H 0.390 0.610 43 H 0.022 0.978 44 H 0.016 0.984 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -2.606 25.001 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 H 0.104 0.896 4 C -0.089 4.089 5 C -0.170 4.170 6 C -0.059 4.059 7 N -0.166 5.166 8 C -0.064 4.064 9 C -0.018 4.018 10 C -0.120 4.120 11 C -0.154 4.154 12 C 0.046 3.954 13 F -0.123 7.123 14 C -0.122 4.122 15 C -0.079 4.079 16 N -0.401 5.401 17 C 0.396 3.604 18 O -0.483 6.483 19 N -0.377 5.377 20 C 0.117 3.883 21 C -0.578 4.578 22 H 0.096 0.904 23 C -0.126 4.126 24 N -0.532 5.532 25 Si 0.703 3.297 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.184 1.184 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.186 0.814 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.221 0.779 42 H 0.223 0.777 43 H 0.040 0.960 44 H 0.034 0.966 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.352 -1.669 24.622 24.905 hybrid contribution 0.236 0.115 -0.407 0.484 sum 3.587 -1.554 24.214 24.528 Atomic orbital electron populations 1.22218 0.95780 1.01809 1.02445 1.20680 0.92991 0.97521 0.82778 0.89587 1.20267 0.89493 1.01302 0.97846 1.20054 0.94751 0.94558 1.07635 1.21612 0.81982 1.00160 1.02106 1.43750 1.06265 1.15924 1.50683 1.21985 0.85312 0.97122 1.01987 1.18235 0.95131 0.87891 1.00505 1.19782 0.97723 0.93257 1.01198 1.20706 0.94665 0.97593 1.02389 1.17275 0.93213 0.83776 1.01118 1.91473 1.93419 1.45558 1.81869 1.20395 0.99255 0.92995 0.99522 1.18748 0.91966 0.94877 1.02262 1.45129 1.72928 1.13015 1.09061 1.16114 0.78673 0.85205 0.80423 1.90855 1.57959 1.14684 1.84773 1.45367 1.69055 1.13638 1.09686 1.19314 0.96513 0.92642 0.79874 1.21099 1.45425 0.97868 0.93432 0.90404 1.24779 0.94022 0.97965 0.95873 1.69886 1.44824 1.35546 1.02968 0.86817 0.79882 0.85094 0.77927 1.19903 1.20948 1.18393 0.92718 0.92101 0.91773 0.90625 0.89718 0.81447 0.90810 0.89718 0.90212 0.85496 0.84651 0.84769 0.77942 0.77742 0.96020 0.96568 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16 2 C 0.17 2.07 2.56 -67.93 -0.17 1.89 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 4 C -0.05 -0.46 5.29 -27.88 -0.15 -0.61 16 5 C -0.16 -1.77 5.30 -102.71 -0.54 -2.31 16 6 C 0.07 0.65 11.20 -16.74 -0.19 0.46 16 7 N -0.48 -4.85 3.18 -121.79 -0.39 -5.24 16 8 C 0.08 0.51 11.03 59.85 0.66 1.17 16 9 C 0.09 1.03 6.81 -83.95 -0.57 0.46 16 10 C -0.10 -1.01 9.94 -39.45 -0.39 -1.40 16 11 C -0.13 -1.40 9.99 -39.48 -0.39 -1.80 16 12 C 0.07 0.81 7.29 -39.44 -0.29 0.52 16 13 F -0.14 -1.82 17.26 2.25 0.04 -1.78 16 14 C -0.10 -1.24 10.08 -39.20 -0.39 -1.64 16 15 C -0.07 -0.91 6.35 -105.14 -0.67 -1.58 16 16 N -0.75 -10.47 4.80 -58.68 -0.28 -10.76 16 17 C 0.70 13.85 8.53 -86.92 -0.74 13.11 16 18 O -0.60 -14.61 16.01 5.29 0.08 -14.52 16 19 N -0.73 -15.06 5.55 -66.42 -0.37 -15.42 16 20 C 0.24 6.05 4.50 -5.19 -0.02 6.03 16 21 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 22 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 23 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 24 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 25 Si 0.88 21.83 27.47 -169.99 -4.67 17.17 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.39 4.26 8.62 -40.82 -0.35 3.91 16 42 H 0.39 7.02 8.34 -40.82 -0.34 6.68 16 43 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 44 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -35.66 385.38 -9.45 -45.11 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.50 Total: 5.95 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -3.95 Total: -0.41 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.26 Total: -57.31 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.52 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.66 -9.45 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413491315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.218 kcal (2) G-P(sol) polarization free energy of solvation -35.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds