Wall clock time and date at job start Tue Mar 31 2020 17:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46668 * 2 1 4 4 C 1.53000 * 109.47219 * 120.00109 * 2 1 3 5 5 C 1.50697 * 109.47149 * 185.00088 * 4 2 1 6 6 C 1.34244 * 126.49355 * 265.02509 * 5 4 2 7 7 N 1.36815 * 109.93068 * 179.97438 * 6 5 4 8 8 C 1.46499 * 125.06872 * 180.02562 * 7 6 5 9 9 C 1.37817 * 109.85886 * 0.26037 * 7 6 5 10 10 C 1.39099 * 133.38996 * 179.74095 * 9 7 6 11 11 C 1.37712 * 119.95166 * 180.02562 * 10 9 7 12 12 C 1.39031 * 120.65071 * 0.02562 * 11 10 9 13 13 F 1.35096 * 119.83672 * 179.97438 * 12 11 10 14 14 C 1.37809 * 120.33153 * 359.54042 * 12 11 10 15 15 C 1.39670 * 119.62252 * 0.69332 * 14 12 11 16 16 N 1.46501 * 109.46777 * 239.99915 * 2 1 3 17 17 C 1.34783 * 119.99951 * 85.00158 * 16 2 1 18 18 O 1.21581 * 119.99651 * 359.97438 * 17 16 2 19 19 N 1.34771 * 119.99779 * 179.97438 * 17 16 2 20 20 C 1.46503 * 119.99825 * 179.97438 * 19 17 16 21 21 C 1.50700 * 109.46964 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00101 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99650 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99667 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00355 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47484 * 89.99960 * 25 23 21 27 27 H 1.48496 * 109.47566 * 209.99837 * 25 23 21 28 28 H 1.48498 * 109.47278 * 330.00052 * 25 23 21 29 29 H 1.08999 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47286 * 299.99752 * 1 2 3 31 31 H 1.09001 * 109.47005 * 60.00039 * 1 2 3 32 32 H 1.09003 * 109.47236 * 64.99538 * 4 2 1 33 33 H 1.09007 * 109.46909 * 304.99845 * 4 2 1 34 34 H 1.07994 * 125.03241 * 359.95249 * 6 5 4 35 35 H 1.09002 * 109.47391 * 90.01932 * 8 7 6 36 36 H 1.09001 * 109.46813 * 330.01989 * 8 7 6 37 37 H 1.09004 * 109.47041 * 210.02116 * 8 7 6 38 38 H 1.07998 * 120.02329 * 0.02562 * 10 9 7 39 39 H 1.07995 * 119.67717 * 179.97438 * 11 10 9 40 40 H 1.07999 * 120.18395 * 179.97438 * 14 12 11 41 41 H 0.96995 * 119.99860 * 264.99580 * 16 2 1 42 42 H 0.97004 * 120.00185 * 0.02562 * 19 17 16 43 43 H 1.08995 * 109.47161 * 300.00212 * 20 19 17 44 44 H 1.08998 * 109.46914 * 60.00243 * 20 19 17 45 45 H 0.97004 * 119.99484 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 6 4.4261 -1.5196 0.8634 7 7 5.7011 -1.0795 1.0926 8 6 6.9203 -1.8079 0.7334 9 6 5.6672 0.1489 1.7166 10 6 6.6542 1.0188 2.1681 11 6 6.3014 2.2067 2.7690 12 6 4.9637 2.5489 2.9314 13 9 4.6361 3.7181 3.5237 14 6 3.9702 1.7055 2.4833 15 6 4.3137 0.4953 1.8765 16 7 2.0183 -0.6906 -1.1962 17 6 2.1470 -0.0183 -2.3572 18 8 1.8574 1.1613 -2.4118 19 7 2.5966 -0.6535 -3.4575 20 6 2.7360 0.0772 -4.7196 21 6 3.2525 -0.8549 -5.7852 22 1 3.4562 -1.8883 -5.5463 23 6 3.4641 -0.3886 -7.0654 24 7 3.9154 -1.2019 -7.9952 25 14 3.1112 1.3985 -7.4787 26 1 4.3328 2.2107 -7.2476 27 1 2.7072 1.5067 -8.9036 28 1 2.0130 1.8992 -6.6136 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 4.1690 -2.4563 0.3912 35 1 7.2285 -1.5263 -0.2735 36 1 6.7264 -2.8800 0.7676 37 1 7.7132 -1.5593 1.4390 38 1 7.6965 0.7629 2.0474 39 1 7.0713 2.8786 3.1182 40 1 2.9318 1.9735 2.6111 41 1 2.2490 -1.6318 -1.1526 42 1 2.8273 -1.5947 -3.4139 43 1 1.7651 0.4705 -5.0209 44 1 3.4366 0.9015 -4.5867 45 1 4.0646 -0.8737 -8.8958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413491315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:32 Heat of formation + Delta-G solvation = -44.993246 kcal Electronic energy + Delta-G solvation = -28259.707133 eV Core-core repulsion = 24190.986613 eV Total energy + Delta-G solvation = -4068.720520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.78490 -42.32018 -40.88699 -37.81478 -37.40448 -36.00124 -34.48774 -34.12491 -32.12179 -31.06194 -30.17218 -29.44386 -28.52505 -25.81957 -24.39062 -23.94304 -22.73342 -22.31434 -21.55029 -20.62783 -19.84544 -18.34637 -18.32803 -17.93493 -17.36324 -17.21531 -16.61993 -16.52263 -16.28021 -16.06647 -15.98038 -15.53007 -15.21154 -14.96098 -14.72217 -14.51645 -14.29355 -14.17175 -14.00083 -13.86807 -13.65875 -13.47520 -13.28449 -13.10014 -12.91656 -12.76180 -12.70337 -12.40662 -12.04194 -11.93579 -11.79928 -11.66076 -11.63895 -11.17338 -10.91377 -10.57326 -10.20894 -9.58326 -9.10974 -8.48480 -8.39973 -6.45658 0.00962 0.40512 1.31837 1.34395 1.47878 1.69011 1.91840 1.97399 2.28389 2.32454 2.70737 2.96011 3.32275 3.57118 3.61941 3.82373 3.87152 4.04485 4.09566 4.21590 4.29984 4.41930 4.46474 4.52682 4.57906 4.73160 4.75065 4.78034 4.78691 4.83928 4.93522 5.00481 5.06315 5.10077 5.16644 5.22266 5.26908 5.36669 5.42239 5.60572 5.72596 5.75515 5.81714 6.03833 6.18973 6.35396 6.39164 6.56522 7.16707 7.36733 7.78378 8.74592 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.003044 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.983501 B = 9197.514268 C = 9548.642521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.049 0.951 4 C -0.037 4.037 5 C -0.185 4.185 6 C 0.068 3.932 7 N -0.486 5.486 8 C 0.071 3.929 9 C 0.067 3.933 10 C -0.098 4.098 11 C -0.140 4.140 12 C 0.046 3.954 13 F -0.153 7.153 14 C -0.119 4.119 15 C -0.099 4.099 16 N -0.719 5.719 17 C 0.694 3.306 18 O -0.649 6.649 19 N -0.723 5.723 20 C 0.254 3.746 21 C -0.541 4.541 22 H 0.062 0.938 23 C 0.030 3.970 24 N -0.930 5.930 25 Si 0.933 3.067 26 H -0.267 1.267 27 H -0.271 1.271 28 H -0.264 1.264 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.137 0.863 41 H 0.408 0.592 42 H 0.404 0.596 43 H 0.006 0.994 44 H 0.002 0.998 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -3.977 26.149 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.061 3.939 3 H 0.067 0.933 4 C -0.076 4.076 5 C -0.192 4.192 6 C -0.057 4.057 7 N -0.167 5.167 8 C -0.070 4.070 9 C -0.039 4.039 10 C -0.118 4.118 11 C -0.160 4.160 12 C 0.026 3.974 13 F -0.132 7.132 14 C -0.138 4.138 15 C -0.104 4.104 16 N -0.376 5.376 17 C 0.394 3.606 18 O -0.532 6.532 19 N -0.376 5.376 20 C 0.129 3.871 21 C -0.579 4.579 22 H 0.080 0.920 23 C -0.171 4.171 24 N -0.568 5.568 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.196 1.196 28 H -0.188 1.188 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.217 0.783 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.155 0.845 41 H 0.244 0.756 42 H 0.240 0.760 43 H 0.024 0.976 44 H 0.020 0.980 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.682 -3.106 25.819 26.264 hybrid contribution 0.173 0.460 -0.705 0.859 sum 3.855 -2.646 25.114 25.546 Atomic orbital electron populations 1.22162 0.94712 1.03040 1.01753 1.20810 0.93744 0.96067 0.83307 0.93309 1.20215 0.88549 1.02712 0.96082 1.20296 0.95702 0.94559 1.08602 1.22187 0.81743 1.00853 1.00960 1.44050 1.07410 1.15456 1.49831 1.22234 0.84582 0.98169 1.01984 1.18568 0.95305 0.88943 1.01133 1.20109 0.98879 0.92675 1.00119 1.20975 0.94445 0.98218 1.02340 1.17563 0.94193 0.83750 1.01875 1.91442 1.93580 1.46027 1.82116 1.20543 0.99585 0.93512 1.00186 1.19107 0.93115 0.95374 1.02807 1.44936 1.71294 1.13756 1.07581 1.16265 0.78233 0.84718 0.81369 1.90826 1.59786 1.16959 1.85634 1.45053 1.69638 1.14153 1.08800 1.18873 0.94985 0.92027 0.81213 1.21258 1.44950 0.97555 0.94153 0.91952 1.25512 0.93943 1.01679 0.95950 1.69971 1.45953 1.37350 1.03574 0.85929 0.79703 0.80570 0.78123 1.19215 1.19599 1.18832 0.90435 0.89889 0.95408 0.87473 0.88402 0.78340 0.91416 0.87363 0.88720 0.82863 0.82619 0.84524 0.75611 0.76045 0.97577 0.98021 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.48 71.98 0.68 -2.69 16 2 C 0.17 3.91 2.56 44.99 0.12 4.03 16 3 H 0.05 1.55 7.58 -2.39 -0.02 1.53 16 4 C -0.04 -0.58 5.29 29.85 0.16 -0.43 16 5 C -0.18 -3.67 5.30 -18.63 -0.10 -3.77 16 6 C 0.07 1.14 11.20 83.00 0.93 2.07 16 7 N -0.49 -8.68 3.18 -539.23 -1.72 -10.40 16 8 C 0.07 0.74 11.03 127.77 1.41 2.15 16 9 C 0.07 1.50 6.81 38.99 0.27 1.76 16 10 C -0.10 -1.88 9.94 22.35 0.22 -1.65 16 11 C -0.14 -2.87 9.99 22.34 0.22 -2.65 16 12 C 0.05 1.15 7.29 22.36 0.16 1.31 16 13 F -0.15 -3.97 17.26 44.97 0.78 -3.20 16 14 C -0.12 -2.97 10.08 22.51 0.23 -2.74 16 15 C -0.10 -2.41 6.35 -20.20 -0.13 -2.54 16 16 N -0.72 -19.06 4.80 -457.81 -2.20 -21.26 16 17 C 0.69 27.38 8.53 179.05 1.53 28.90 16 18 O -0.65 -32.00 16.01 -3.97 -0.06 -32.07 16 19 N -0.72 -29.62 5.55 -482.31 -2.68 -32.30 16 20 C 0.25 12.86 4.50 85.63 0.38 13.24 16 21 C -0.54 -30.01 9.83 25.60 0.25 -29.76 16 22 H 0.06 3.58 7.84 -2.91 -0.02 3.56 16 23 C 0.03 1.68 5.47 84.65 0.46 2.14 16 24 N -0.93 -55.36 13.96 21.45 0.30 -55.06 16 25 Si 0.93 44.94 27.47 68.60 1.88 46.83 16 26 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.26 -12.82 6.54 99.48 0.65 -12.17 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.20 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.09 0.70 8.09 -2.38 -0.02 0.68 16 38 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 40 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 41 H 0.41 7.71 8.62 -92.71 -0.80 6.91 16 42 H 0.40 14.06 8.34 -92.71 -0.77 13.29 16 43 H 0.01 0.34 7.20 -2.39 -0.02 0.32 16 44 H 0.00 0.10 7.57 -2.39 -0.02 0.08 16 45 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -79.17 385.38 2.50 -76.67 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.60 Total: 21.39 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.80 Total: 9.39 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -6.29 Total: -119.01 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.06 Total: -32.07 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.83 kcal Total: -79.17 2.50 -76.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413491315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.672 kcal (2) G-P(sol) polarization free energy of solvation -79.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds