Wall clock time and date at job start Tue Mar 31 2020 18:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42905 * 114.00084 * 2 1 4 4 C 1.53003 * 109.47177 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47064 * 64.99792 * 4 3 2 6 6 C 1.46496 * 119.99858 * 269.99716 * 5 4 3 7 7 C 1.50695 * 109.47334 * 269.99988 * 6 5 4 8 8 H 1.08003 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99876 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00259 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99611 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47284 * 90.00229 * 11 9 7 13 13 H 1.48506 * 109.47156 * 209.99939 * 11 9 7 14 14 H 1.48499 * 109.47289 * 329.99870 * 11 9 7 15 15 C 1.34781 * 119.99892 * 89.99871 * 5 4 3 16 16 O 1.21595 * 120.00031 * 0.02562 * 15 5 4 17 17 N 1.34774 * 119.99650 * 179.97438 * 15 5 4 18 18 C 1.40124 * 119.99473 * 184.57951 * 17 15 5 19 19 C 1.39499 * 119.79408 * 144.89385 * 18 17 15 20 20 C 1.36610 * 120.64743 * 179.97438 * 19 18 17 21 21 C 1.38943 * 119.97215 * 359.97438 * 20 19 18 22 22 C 1.40758 * 119.92610 * 0.02562 * 21 20 19 23 23 C 1.38107 * 119.80270 * 324.61629 * 18 17 15 24 24 N 1.34852 * 105.64547 * 179.97438 * 22 21 20 25 25 N 1.28668 * 109.22947 * 359.97438 * 24 22 21 26 26 N 1.28813 * 111.76335 * 0.02562 * 25 24 22 27 27 C 1.46503 * 125.91507 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.47358 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47164 * 300.00067 * 1 2 3 30 30 H 1.09003 * 109.47703 * 59.99959 * 1 2 3 31 31 H 1.08994 * 109.47297 * 59.99943 * 3 2 1 32 32 H 1.09006 * 109.46769 * 300.00137 * 3 2 1 33 33 H 1.08993 * 109.47131 * 304.99818 * 4 3 2 34 34 H 1.09002 * 109.46913 * 184.99797 * 4 3 2 35 35 H 1.08993 * 109.47315 * 30.00623 * 6 5 4 36 36 H 1.09009 * 109.46688 * 150.00013 * 6 5 4 37 37 H 0.96993 * 120.00510 * 180.02562 * 10 9 7 38 38 H 0.96994 * 120.00417 * 4.30947 * 17 15 5 39 39 H 1.07991 * 119.67801 * 359.97438 * 19 18 17 40 40 H 1.07989 * 120.01322 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.25784 * 359.97438 * 23 18 17 42 42 H 1.08996 * 109.47218 * 270.01832 * 27 26 25 43 43 H 1.09007 * 109.47278 * 30.02650 * 27 26 25 44 44 H 1.09006 * 109.46680 * 150.02076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3427 7 6 5.5009 -1.2978 -0.9449 8 1 6.2195 -0.5459 -0.6538 9 6 5.8605 -2.6289 -0.9527 10 7 4.9857 -3.5443 -1.3076 11 14 7.5905 -3.1318 -0.4589 12 1 7.6339 -3.3849 1.0037 13 1 7.9733 -4.3683 -1.1868 14 1 8.5395 -2.0420 -0.8010 15 6 4.2614 1.3337 -2.3219 16 8 4.1543 2.5426 -2.2471 17 7 4.6668 0.7630 -3.4736 18 6 5.0558 1.5658 -4.5542 19 6 6.0896 1.1471 -5.3920 20 6 6.4826 1.9157 -6.4508 21 6 5.8503 3.1272 -6.7016 22 6 4.8058 3.5609 -5.8635 23 6 4.4096 2.7641 -4.7867 24 7 4.4092 4.7494 -6.3622 25 7 5.1209 5.0343 -7.3955 26 7 5.9883 4.1155 -7.6460 27 6 6.9544 4.1230 -8.7473 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9785 2.1766 0.0889 35 1 3.3852 -1.3629 -0.6734 36 1 3.9119 -1.2114 -2.3669 37 1 5.2385 -4.4807 -1.3127 38 1 4.6931 -0.2033 -3.5531 39 1 6.5841 0.2060 -5.2018 40 1 7.2843 1.5817 -7.0926 41 1 3.6063 3.0837 -4.1395 42 1 6.5123 3.6456 -9.6217 43 1 7.2203 5.1518 -8.9904 44 1 7.8496 3.5772 -8.4490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592276613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:00 Heat of formation + Delta-G solvation = 57.777334 kcal Electronic energy + Delta-G solvation = -28651.106731 eV Core-core repulsion = 24606.762640 eV Total energy + Delta-G solvation = -4044.344091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.98917 -40.06423 -38.00573 -37.22203 -34.99377 -34.79235 -34.02133 -32.64451 -30.45355 -30.13940 -28.80236 -27.84277 -27.05104 -25.88862 -24.11647 -23.08810 -22.91972 -22.02159 -21.08198 -19.37243 -18.44289 -17.61066 -17.00550 -16.64092 -16.58129 -16.14267 -15.88108 -15.64481 -14.94583 -14.86922 -14.51285 -14.46887 -14.11517 -13.81289 -13.62333 -13.31765 -13.22107 -12.79201 -12.53930 -12.25173 -12.09194 -11.96639 -11.77650 -11.73232 -11.48015 -11.46056 -11.00291 -10.90272 -10.73019 -10.61639 -10.53667 -10.20915 -9.86598 -9.75436 -9.41758 -9.27690 -8.58039 -8.46136 -7.90875 -7.49868 -6.19250 -4.27357 0.74992 1.39898 2.21766 2.46056 3.20586 3.20842 3.28496 3.32437 3.58846 3.97146 4.11233 4.18257 4.29482 4.37529 4.57815 4.75075 4.83456 5.00647 5.04483 5.13551 5.24051 5.36155 5.41550 5.46889 5.51088 5.65933 5.68519 5.72551 5.87193 6.00160 6.07693 6.15122 6.31671 6.37489 6.39727 6.56264 6.64220 6.76986 7.18872 7.24067 7.35413 7.49414 7.73540 7.80852 8.04990 8.45140 8.52014 8.82795 9.18768 9.41125 10.86694 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.003669 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.773827 B = 7629.028596 C = 9766.904195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.046 3.954 4 C 0.140 3.860 5 N -0.600 5.600 6 C 0.241 3.759 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.895 3.105 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.706 3.294 16 O -0.605 6.605 17 N -0.679 5.679 18 C 0.180 3.820 19 C -0.099 4.099 20 C -0.089 4.089 21 C 0.001 3.999 22 C 0.031 3.969 23 C -0.065 4.065 24 N -0.256 5.256 25 N -0.033 5.033 26 N -0.326 5.326 27 C 0.092 3.908 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.026 0.974 37 H 0.265 0.735 38 H 0.421 0.579 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.156 0.844 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 7.692 -9.430 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.032 4.032 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.122 3.878 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.409 3.591 16 O -0.486 6.486 17 N -0.328 5.328 18 C 0.080 3.920 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.094 4.094 23 C -0.091 4.091 24 N -0.132 5.132 25 N -0.014 5.014 26 N -0.127 5.127 27 C -0.049 4.049 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.261 0.739 39 H 0.161 0.839 40 H 0.149 0.851 41 H 0.173 0.827 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.194 9.457 -9.780 13.606 hybrid contribution 1.361 -1.753 0.445 2.263 sum 1.167 7.704 -9.336 12.160 Atomic orbital electron populations 1.22674 0.82205 1.02332 0.99184 1.88046 1.18629 1.27512 1.95215 1.23079 0.95387 0.84893 0.99876 1.21247 0.90864 0.99499 0.86857 1.47333 1.67182 1.09222 1.09529 1.19400 0.97558 0.72954 0.97928 1.21563 0.97275 0.92432 1.46717 0.92110 1.24930 0.97500 0.96344 0.94930 1.69925 1.34350 1.01218 1.47188 0.86541 0.84365 0.78025 0.78789 1.20530 1.21138 1.19855 1.15835 0.77988 0.84904 0.80412 1.90832 1.61452 1.12494 1.83816 1.42832 1.68679 1.10542 1.10707 1.17249 0.93808 0.92274 0.88686 1.20690 0.95615 1.01095 0.94845 1.19402 1.00988 0.91458 0.99340 1.19746 1.02808 0.94990 0.94162 1.19691 0.97143 0.94214 0.98362 1.20329 1.00746 0.93196 0.94828 1.75337 1.20445 1.12907 1.04489 1.77917 0.98638 1.12976 1.11834 1.46940 1.28120 1.14334 1.23298 1.22118 0.90471 1.05558 0.86783 0.89931 0.94737 0.94649 0.93160 0.93255 0.89342 0.89269 0.92736 0.95637 0.92536 0.73884 0.83875 0.85085 0.82664 0.89595 0.88305 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.58 9.53 -35.23 -0.34 -6.91 16 3 C 0.05 0.73 6.28 37.16 0.23 0.97 16 4 C 0.14 2.52 5.81 -4.04 -0.02 2.49 16 5 N -0.60 -12.35 2.42 -180.80 -0.44 -12.79 16 6 C 0.24 5.56 4.78 -5.20 -0.02 5.53 16 7 C -0.54 -13.57 9.39 -34.44 -0.32 -13.89 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -23.71 13.29 55.43 0.74 -22.98 16 11 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.71 14.57 8.12 -86.92 -0.71 13.87 16 16 O -0.60 -13.33 13.36 5.28 0.07 -13.26 16 17 N -0.68 -12.51 5.22 -14.21 -0.07 -12.59 16 18 C 0.18 3.03 6.29 -83.64 -0.53 2.50 16 19 C -0.10 -1.35 9.88 -39.70 -0.39 -1.74 16 20 C -0.09 -1.07 10.00 -39.91 -0.40 -1.47 16 21 C 0.00 0.02 6.94 -84.16 -0.58 -0.56 16 22 C 0.03 0.54 7.36 -85.04 -0.63 -0.09 16 23 C -0.07 -1.17 8.74 -39.09 -0.34 -1.51 16 24 N -0.26 -4.59 12.43 32.03 0.40 -4.19 16 25 N -0.03 -0.51 13.08 60.35 0.79 0.28 16 26 N -0.33 -4.08 3.80 -65.48 -0.25 -4.33 16 27 C 0.09 0.58 11.40 59.85 0.68 1.26 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 34 H 0.09 1.55 7.42 -51.93 -0.39 1.16 16 35 H 0.05 1.37 7.11 -51.93 -0.37 1.00 16 36 H 0.03 0.60 6.30 -51.92 -0.33 0.27 16 37 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 38 H 0.42 7.67 6.52 -40.82 -0.27 7.40 16 39 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.16 3.05 6.23 -52.49 -0.33 2.72 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -32.28 374.47 -6.36 -38.64 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.87 Total: 7.02 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -2.02 Total: 10.50 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 1.16 Total: -56.59 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.27 Total: -20.17 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.28 -6.36 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592276613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.420 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds