Wall clock time and date at job start Tue Mar 31 2020 18:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42905 * 114.00084 * 2 1 4 4 C 1.53003 * 109.47177 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47064 * 64.99792 * 4 3 2 6 6 C 1.46496 * 119.99858 * 269.99716 * 5 4 3 7 7 C 1.50695 * 109.47334 * 269.99988 * 6 5 4 8 8 H 1.08003 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99876 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00259 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99611 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47284 * 90.00229 * 11 9 7 13 13 H 1.48506 * 109.47156 * 209.99939 * 11 9 7 14 14 H 1.48499 * 109.47289 * 329.99870 * 11 9 7 15 15 C 1.34781 * 119.99892 * 89.99871 * 5 4 3 16 16 O 1.21595 * 120.00031 * 0.02562 * 15 5 4 17 17 N 1.34774 * 119.99650 * 179.97438 * 15 5 4 18 18 C 1.40124 * 119.99473 * 184.57951 * 17 15 5 19 19 C 1.39499 * 119.79408 * 144.89385 * 18 17 15 20 20 C 1.36610 * 120.64743 * 179.97438 * 19 18 17 21 21 C 1.38943 * 119.97215 * 359.97438 * 20 19 18 22 22 C 1.40758 * 119.92610 * 0.02562 * 21 20 19 23 23 C 1.38107 * 119.80270 * 324.61629 * 18 17 15 24 24 N 1.34852 * 105.64547 * 179.97438 * 22 21 20 25 25 N 1.28668 * 109.22947 * 359.97438 * 24 22 21 26 26 N 1.28813 * 111.76335 * 0.02562 * 25 24 22 27 27 C 1.46503 * 125.91507 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.47358 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47164 * 300.00067 * 1 2 3 30 30 H 1.09003 * 109.47703 * 59.99959 * 1 2 3 31 31 H 1.08994 * 109.47297 * 59.99943 * 3 2 1 32 32 H 1.09006 * 109.46769 * 300.00137 * 3 2 1 33 33 H 1.08993 * 109.47131 * 304.99818 * 4 3 2 34 34 H 1.09002 * 109.46913 * 184.99797 * 4 3 2 35 35 H 1.08993 * 109.47315 * 30.00623 * 6 5 4 36 36 H 1.09009 * 109.46688 * 150.00013 * 6 5 4 37 37 H 0.96993 * 120.00510 * 180.02562 * 10 9 7 38 38 H 0.96994 * 120.00417 * 4.30947 * 17 15 5 39 39 H 1.07991 * 119.67801 * 359.97438 * 19 18 17 40 40 H 1.07989 * 120.01322 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.25784 * 359.97438 * 23 18 17 42 42 H 1.08996 * 109.47218 * 270.01832 * 27 26 25 43 43 H 1.09007 * 109.47278 * 30.02650 * 27 26 25 44 44 H 1.09006 * 109.46680 * 150.02076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3427 7 6 5.5009 -1.2978 -0.9449 8 1 6.2195 -0.5459 -0.6538 9 6 5.8605 -2.6289 -0.9527 10 7 4.9857 -3.5443 -1.3076 11 14 7.5905 -3.1318 -0.4589 12 1 7.6339 -3.3849 1.0037 13 1 7.9733 -4.3683 -1.1868 14 1 8.5395 -2.0420 -0.8010 15 6 4.2614 1.3337 -2.3219 16 8 4.1543 2.5426 -2.2471 17 7 4.6668 0.7630 -3.4736 18 6 5.0558 1.5658 -4.5542 19 6 6.0896 1.1471 -5.3920 20 6 6.4826 1.9157 -6.4508 21 6 5.8503 3.1272 -6.7016 22 6 4.8058 3.5609 -5.8635 23 6 4.4096 2.7641 -4.7867 24 7 4.4092 4.7494 -6.3622 25 7 5.1209 5.0343 -7.3955 26 7 5.9883 4.1155 -7.6460 27 6 6.9544 4.1230 -8.7473 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9785 2.1766 0.0889 35 1 3.3852 -1.3629 -0.6734 36 1 3.9119 -1.2114 -2.3669 37 1 5.2385 -4.4807 -1.3127 38 1 4.6931 -0.2033 -3.5531 39 1 6.5841 0.2060 -5.2018 40 1 7.2843 1.5817 -7.0926 41 1 3.6063 3.0837 -4.1395 42 1 6.5123 3.6456 -9.6217 43 1 7.2203 5.1518 -8.9904 44 1 7.8496 3.5772 -8.4490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592276613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:59 Heat of formation + Delta-G solvation = 35.836343 kcal Electronic energy + Delta-G solvation = -28652.058164 eV Core-core repulsion = 24606.762640 eV Total energy + Delta-G solvation = -4045.295524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.11535 -41.58693 -39.29440 -38.51111 -36.65468 -35.79779 -35.42126 -34.54201 -31.57499 -31.50471 -30.16086 -28.79795 -28.62301 -27.10696 -25.39455 -24.78678 -24.25349 -23.33205 -22.15477 -20.86099 -19.76017 -18.94592 -18.49177 -18.20122 -17.64684 -17.57185 -17.15248 -16.98926 -16.49990 -16.24408 -16.05021 -15.76844 -15.40137 -15.00799 -14.79699 -14.39696 -14.24868 -14.04622 -13.76324 -13.60449 -13.53949 -13.31934 -13.13374 -13.05067 -12.80247 -12.74375 -12.73405 -12.57334 -12.12810 -11.90178 -11.83456 -11.70261 -11.64426 -11.26340 -10.92180 -10.60246 -10.50791 -9.66165 -9.45251 -8.87741 -8.14094 -6.29685 -0.38198 0.20395 1.31244 1.34488 1.45147 1.48148 1.56800 1.75908 2.11479 2.44429 2.68166 2.89178 2.96252 3.14722 3.17982 3.61629 3.70547 3.99861 4.10731 4.17822 4.23376 4.34161 4.38440 4.40384 4.52892 4.54562 4.56729 4.61827 4.65463 4.84810 4.88327 4.91844 4.97973 5.04244 5.14950 5.21976 5.29789 5.33548 5.64381 5.65504 5.81564 5.90943 6.09937 6.13235 6.34261 6.72726 7.00691 7.29344 7.41564 7.60196 8.90557 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.003669 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.773827 B = 7629.028596 C = 9766.904195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.054 3.946 4 C 0.134 3.866 5 N -0.604 5.604 6 C 0.262 3.738 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.026 3.974 10 N -0.916 5.916 11 Si 0.956 3.044 12 H -0.280 1.280 13 H -0.279 1.279 14 H -0.270 1.270 15 C 0.701 3.299 16 O -0.623 6.623 17 N -0.675 5.675 18 C 0.169 3.831 19 C -0.105 4.105 20 C -0.058 4.058 21 C -0.001 4.001 22 C 0.007 3.993 23 C -0.093 4.093 24 N -0.304 5.304 25 N -0.040 5.040 26 N -0.305 5.305 27 C 0.073 3.927 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.031 0.969 36 H 0.019 0.981 37 H 0.267 0.733 38 H 0.421 0.579 39 H 0.167 0.833 40 H 0.185 0.815 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 7.188 -11.048 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.024 4.024 4 C 0.010 3.990 5 N -0.337 5.337 6 C 0.141 3.859 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.175 4.175 10 N -0.555 5.555 11 Si 0.782 3.218 12 H -0.206 1.206 13 H -0.205 1.205 14 H -0.195 1.195 15 C 0.403 3.597 16 O -0.506 6.506 17 N -0.324 5.324 18 C 0.070 3.930 19 C -0.128 4.128 20 C -0.080 4.080 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.119 4.119 24 N -0.179 5.179 25 N -0.021 5.021 26 N -0.107 5.107 27 C -0.065 4.065 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.261 0.739 39 H 0.184 0.816 40 H 0.203 0.797 41 H 0.142 0.858 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.178 8.987 -11.433 14.704 hybrid contribution 0.643 -1.539 0.823 1.860 sum 2.820 7.448 -10.611 13.267 Atomic orbital electron populations 1.22861 0.80139 1.03318 1.00505 1.87994 1.21013 1.28224 1.95467 1.22972 0.93866 0.84739 1.00782 1.21404 0.92533 0.99305 0.85723 1.47330 1.67521 1.08335 1.10469 1.18979 0.96050 0.74163 0.96737 1.21688 0.97790 0.92452 1.46628 0.93048 1.25594 1.00807 0.96272 0.94802 1.70017 1.36011 1.01525 1.47987 0.85589 0.80252 0.77751 0.78213 1.20621 1.20481 1.19505 1.15986 0.78040 0.84720 0.80921 1.90821 1.62289 1.13219 1.84234 1.42775 1.68427 1.10597 1.10630 1.17540 0.94865 0.91874 0.88749 1.20936 0.94881 1.02281 0.94706 1.19906 1.00463 0.89302 0.98285 1.19987 1.02124 0.95977 0.93986 1.19816 0.98619 0.94417 0.99000 1.20054 1.01368 0.94605 0.95825 1.75291 1.22419 1.14093 1.06062 1.77809 0.99145 1.13806 1.11337 1.47482 1.27311 1.12631 1.23307 1.22777 0.90352 1.07635 0.85713 0.89201 0.92409 0.94255 0.89959 0.94429 0.89707 0.88890 0.95100 0.96286 0.92351 0.73888 0.81590 0.79741 0.85837 0.87168 0.86752 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -14.48 9.53 -148.98 -1.42 -15.90 16 3 C 0.05 1.76 6.28 71.98 0.45 2.21 16 4 C 0.13 4.97 5.81 86.38 0.50 5.47 16 5 N -0.60 -25.72 2.42 -844.19 -2.04 -27.77 16 6 C 0.26 12.39 4.78 85.63 0.41 12.80 16 7 C -0.55 -27.66 9.39 25.60 0.24 -27.42 16 8 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 9 C 0.03 1.32 5.46 84.66 0.46 1.78 16 10 N -0.92 -48.95 13.29 21.45 0.28 -48.67 16 11 Si 0.96 40.43 29.54 68.60 2.03 42.46 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 15 C 0.70 30.11 8.12 179.05 1.45 31.56 16 16 O -0.62 -28.85 13.36 -4.01 -0.05 -28.91 16 17 N -0.68 -25.66 5.22 -317.12 -1.65 -27.31 16 18 C 0.17 5.75 6.29 38.09 0.24 5.99 16 19 C -0.10 -2.62 9.88 22.19 0.22 -2.40 16 20 C -0.06 -1.16 10.00 22.06 0.22 -0.94 16 21 C 0.00 -0.03 6.94 39.06 0.27 0.24 16 22 C 0.01 0.26 7.36 39.65 0.29 0.55 16 23 C -0.09 -3.50 8.74 22.59 0.20 -3.30 16 24 N -0.30 -11.22 12.43 -52.56 -0.65 -11.88 16 25 N -0.04 -1.22 13.08 37.02 0.48 -0.74 16 26 N -0.30 -6.85 3.80 -361.08 -1.37 -8.22 16 27 C 0.07 0.60 11.40 127.77 1.46 2.06 16 28 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.08 3.16 8.07 -2.39 -0.02 3.14 16 34 H 0.09 3.33 7.42 -2.39 -0.02 3.31 16 35 H 0.03 1.61 7.11 -2.39 -0.02 1.59 16 36 H 0.02 0.93 6.30 -2.38 -0.02 0.91 16 37 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 38 H 0.42 15.70 6.52 -92.71 -0.60 15.10 16 39 H 0.17 3.41 8.06 -2.92 -0.02 3.38 16 40 H 0.19 1.76 8.06 -2.92 -0.02 1.74 16 41 H 0.12 5.34 6.23 -2.91 -0.02 5.32 16 42 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 Total: -1.00 -73.41 374.47 3.70 -69.71 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.43 Total: 26.63 kcal Atomic # 6 Polarization: 22.93 SS G_CDS: 7.66 Total: 30.59 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -4.95 Total: -124.58 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.47 Total: -44.81 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -73.41 3.70 -69.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592276613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.549 kcal (2) G-P(sol) polarization free energy of solvation -73.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds