Wall clock time and date at job start Tue Mar 31 2020 17:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45062 * 2 1 4 4 C 1.53039 * 109.46257 * 119.96908 * 2 1 3 5 5 C 1.53192 * 109.31412 * 181.38631 * 4 2 1 6 6 N 1.46918 * 108.77534 * 305.36001 * 5 4 2 7 7 C 1.36934 * 120.63447 * 233.61017 * 6 5 4 8 8 H 1.08004 * 119.99615 * 26.16204 * 7 6 5 9 9 C 1.38811 * 120.00160 * 206.16083 * 7 6 5 10 10 N 1.31615 * 120.00195 * 19.38843 * 9 7 6 11 11 Si 1.86803 * 119.99743 * 199.38473 * 9 7 6 12 12 H 1.48504 * 109.46862 * 90.00409 * 11 9 7 13 13 H 1.48500 * 109.47184 * 210.00000 * 11 9 7 14 14 H 1.48496 * 109.47375 * 330.00383 * 11 9 7 15 15 C 1.46935 * 118.76412 * 53.58850 * 6 5 4 16 16 C 1.53045 * 109.46052 * 240.03324 * 2 1 3 17 17 H 1.08995 * 109.49935 * 298.60117 * 16 2 1 18 18 N 1.46501 * 109.49644 * 58.66330 * 16 2 1 19 19 C 1.34772 * 119.99941 * 204.93426 * 18 16 2 20 20 O 1.21494 * 120.00005 * 0.02562 * 19 18 16 21 21 C 1.48314 * 119.99924 * 180.27357 * 19 18 16 22 22 N 1.32889 * 120.14491 * 76.37452 * 21 19 18 23 23 C 1.31834 * 120.00168 * 179.97438 * 22 21 19 24 24 C 1.39005 * 120.28616 * 359.97438 * 23 22 21 25 25 N 1.31834 * 120.29557 * 0.02562 * 24 23 22 26 26 C 1.32903 * 119.99305 * 359.71627 * 25 24 23 27 27 C 1.48309 * 120.14290 * 180.29527 * 26 25 24 28 28 N 1.34775 * 119.99691 * 5.60185 * 27 26 25 29 29 O 1.21488 * 119.99669 * 185.60067 * 27 26 25 30 30 H 1.09003 * 109.46666 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46906 * 299.96828 * 1 2 3 32 32 H 1.08999 * 109.47269 * 59.96364 * 1 2 3 33 33 H 1.09007 * 109.49415 * 301.33821 * 4 2 1 34 34 H 1.08995 * 109.50021 * 61.42633 * 4 2 1 35 35 H 1.08998 * 109.58504 * 65.15014 * 5 4 2 36 36 H 1.09005 * 109.58182 * 185.42780 * 5 4 2 37 37 H 0.96998 * 119.99981 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.61530 * 186.63889 * 15 6 5 39 39 H 1.09001 * 109.56187 * 66.21483 * 15 6 5 40 40 H 0.97003 * 119.99870 * 24.93132 * 18 16 2 41 41 H 1.07997 * 119.85813 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.85000 * 180.02562 * 24 23 22 43 43 H 0.96997 * 120.00408 * 359.97438 * 28 27 26 44 44 H 0.96999 * 119.99799 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9761 -2.2737 -0.0001 8 1 5.0256 -2.9513 0.8394 9 6 5.8330 -2.4416 -1.0791 10 7 6.0534 -1.4419 -1.9063 11 14 6.6737 -4.0865 -1.3570 12 1 5.8190 -4.9393 -2.2215 13 1 7.9845 -3.8668 -2.0194 14 1 6.8858 -4.7609 -0.0511 15 6 3.5714 -0.6893 -1.2647 16 6 2.0399 -0.7208 -1.2501 17 1 1.6974 -1.7554 -1.2387 18 7 1.5256 -0.0487 -2.4460 19 6 1.3984 -0.7319 -3.6007 20 8 1.7098 -1.9052 -3.6498 21 6 0.8834 -0.0499 -4.8129 22 7 1.6693 0.7714 -5.5012 23 6 1.2089 1.3757 -6.5786 24 6 -0.0976 1.1577 -7.0003 25 7 -0.8872 0.3453 -6.3262 26 6 -0.4332 -0.2739 -5.2413 27 6 -1.3166 -1.1936 -4.4842 28 7 -2.5433 -1.4910 -4.9568 29 8 -0.9345 -1.6789 -3.4380 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8902 32 1 -0.3634 0.5144 -0.8896 33 1 1.6572 -0.2208 2.1398 34 1 1.6978 -1.7556 1.2383 35 1 3.9143 0.3409 1.3673 36 1 3.9416 -1.2824 2.0999 37 1 6.6525 -1.5591 -2.6601 38 1 3.9412 -1.2855 -2.0988 39 1 3.9147 0.3400 -1.3681 40 1 1.2766 0.8880 -2.4066 41 1 1.8494 2.0430 -7.1360 42 1 -0.4674 1.6561 -7.8842 43 1 -2.8485 -1.1033 -5.7918 44 1 -3.1212 -2.0923 -4.4614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968627937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:42 Heat of formation + Delta-G solvation = -29.252973 kcal Electronic energy + Delta-G solvation = -29767.186763 eV Core-core repulsion = 25719.068755 eV Total energy + Delta-G solvation = -4048.118009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.68726 -40.82333 -40.24573 -39.10093 -36.13068 -35.90036 -34.75016 -34.54283 -33.09341 -32.78626 -30.54798 -29.03258 -26.94501 -26.68056 -25.83291 -23.96124 -22.71117 -22.57843 -21.89310 -21.09904 -19.45524 -19.24305 -19.04781 -18.75051 -17.54154 -17.40999 -16.90254 -16.48299 -16.40602 -16.08775 -15.72673 -15.47045 -15.29015 -15.24052 -15.11337 -14.85005 -14.52623 -14.37859 -14.11395 -13.60257 -13.31233 -13.08457 -13.00472 -12.79200 -12.60991 -12.59327 -12.34043 -12.18396 -11.92242 -11.78352 -11.66914 -11.59737 -11.24885 -11.20875 -10.87176 -10.63839 -10.55927 -10.36257 -10.11744 -8.73702 -7.90860 -5.34081 -0.97506 -0.28939 1.37142 1.43775 1.45322 1.49590 1.51197 1.84425 2.05133 2.46997 2.47263 2.84656 3.07137 3.21661 3.26915 3.59866 3.75897 3.80746 3.87569 3.97284 4.07204 4.13974 4.30068 4.47051 4.55135 4.63580 4.71085 4.89647 4.95447 5.06420 5.08971 5.13956 5.18279 5.26091 5.39349 5.42433 5.51636 5.60046 5.68414 5.75205 5.81418 6.15933 6.32461 6.40707 6.45361 7.07808 7.09985 7.16909 7.83172 8.32460 9.14429 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.004158 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.389735 B = 6732.870473 C = 7713.523575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 H 0.081 0.919 4 C -0.115 4.115 5 C 0.137 3.863 6 N -0.609 5.609 7 C -0.266 4.266 8 H 0.071 0.929 9 C -0.050 4.050 10 N -0.929 5.929 11 Si 0.959 3.041 12 H -0.299 1.299 13 H -0.288 1.288 14 H -0.258 1.258 15 C 0.181 3.819 16 C 0.146 3.854 17 H 0.045 0.955 18 N -0.688 5.688 19 C 0.586 3.414 20 O -0.565 6.565 21 C 0.077 3.923 22 N -0.445 5.445 23 C 0.091 3.909 24 C 0.088 3.912 25 N -0.407 5.407 26 C 0.046 3.954 27 C 0.563 3.437 28 N -0.806 5.806 29 O -0.547 6.547 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.025 0.975 36 H 0.059 0.941 37 H 0.247 0.753 38 H 0.042 0.958 39 H 0.001 0.999 40 H 0.406 0.594 41 H 0.231 0.769 42 H 0.245 0.755 43 H 0.423 0.577 44 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.993 11.931 -10.532 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.154 4.154 5 C 0.012 3.988 6 N -0.332 5.332 7 C -0.396 4.396 8 H 0.089 0.911 9 C -0.246 4.246 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.227 1.227 13 H -0.215 1.215 14 H -0.182 1.182 15 C 0.053 3.947 16 C 0.040 3.960 17 H 0.063 0.937 18 N -0.337 5.337 19 C 0.369 3.631 20 O -0.442 6.442 21 C -0.064 4.064 22 N -0.162 5.162 23 C -0.073 4.073 24 C -0.077 4.077 25 N -0.124 5.124 26 C -0.093 4.093 27 C 0.344 3.656 28 N -0.371 5.371 29 O -0.423 6.423 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.242 0.758 41 H 0.247 0.753 42 H 0.261 0.739 43 H 0.256 0.744 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.290 10.774 -9.885 25.010 hybrid contribution 0.611 -0.774 -0.690 1.204 sum -19.679 10.000 -10.575 24.477 Atomic orbital electron populations 1.21693 0.93248 1.01359 1.02258 1.21281 0.96724 0.99436 0.92924 0.90047 1.21976 0.95927 1.00125 0.97387 1.21174 0.93347 0.96382 0.87894 1.44248 1.48017 1.39980 1.00994 1.19537 1.10393 1.04460 1.05185 0.91150 1.25737 0.98666 1.00355 0.99836 1.70189 1.38945 1.30678 1.17650 0.85388 0.77101 0.80435 0.78385 1.22666 1.21466 1.18238 1.20763 0.89418 0.95074 0.89419 1.21529 0.94856 0.95666 0.83933 0.93686 1.45577 1.64696 1.14117 1.09353 1.17816 0.76463 0.85630 0.83148 1.90794 1.50964 1.17715 1.84763 1.21765 0.92101 0.95711 0.96777 1.68630 1.35186 1.04797 1.07563 1.25187 0.96624 0.94890 0.90595 1.25101 0.90722 0.92347 0.99552 1.68496 1.36061 1.05167 1.02672 1.21852 0.92273 0.99218 0.95955 1.17890 0.82941 0.80506 0.84227 1.43304 1.14829 1.50276 1.28703 1.90971 1.74070 1.53022 1.24252 0.94333 0.89977 0.92935 0.88154 0.93349 0.95738 0.92284 0.94412 0.93924 0.98084 0.75836 0.75276 0.73874 0.74431 0.74900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.02 71.98 0.65 -2.97 16 2 C -0.08 -2.90 2.27 -10.77 -0.02 -2.93 16 3 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 4 C -0.11 -3.99 5.36 30.67 0.16 -3.82 16 5 C 0.14 5.90 6.51 86.36 0.56 6.47 16 6 N -0.61 -33.54 3.00 -699.10 -2.10 -35.64 16 7 C -0.27 -16.06 9.59 84.03 0.81 -15.25 16 8 H 0.07 4.10 7.89 -2.91 -0.02 4.07 16 9 C -0.05 -3.11 4.87 84.86 0.41 -2.70 16 10 N -0.93 -60.57 11.21 21.65 0.24 -60.33 16 11 Si 0.96 49.99 29.60 68.60 2.03 52.02 16 12 H -0.30 -16.09 7.11 99.48 0.71 -15.38 16 13 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 14 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 15 C 0.18 9.91 4.91 86.36 0.42 10.33 16 16 C 0.15 6.56 2.06 45.07 0.09 6.66 16 17 H 0.04 2.40 7.58 -2.39 -0.02 2.38 16 18 N -0.69 -27.33 4.37 -444.60 -1.94 -29.27 16 19 C 0.59 25.66 5.17 86.93 0.45 26.11 16 20 O -0.57 -31.18 16.07 13.87 0.22 -30.96 16 21 C 0.08 2.57 6.55 42.16 0.28 2.84 16 22 N -0.45 -12.57 10.44 -183.38 -1.91 -14.49 16 23 C 0.09 1.29 11.23 84.88 0.95 2.24 16 24 C 0.09 0.84 11.23 84.88 0.95 1.79 16 25 N -0.41 -6.91 9.73 -183.37 -1.78 -8.69 16 26 C 0.05 1.23 6.78 42.16 0.29 1.51 16 27 C 0.56 15.99 8.06 86.92 0.70 16.69 16 28 N -0.81 -13.53 8.86 -175.29 -1.55 -15.08 16 29 O -0.55 -21.11 14.74 13.89 0.20 -20.91 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.42 7.36 -2.39 -0.02 1.40 16 33 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 2.46 7.93 -2.38 -0.02 2.45 16 37 H 0.25 15.68 8.31 -92.71 -0.77 14.90 16 38 H 0.04 2.79 5.99 -2.39 -0.01 2.78 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.41 13.14 8.29 -92.71 -0.77 12.38 16 41 H 0.23 0.95 8.06 -2.91 -0.02 0.92 16 42 H 0.25 -0.66 8.06 -2.91 -0.02 -0.69 16 43 H 0.42 4.61 8.20 -92.71 -0.76 3.85 16 44 H 0.42 5.68 8.93 -92.71 -0.83 4.85 16 Total: -1.00 -96.03 366.53 -1.17 -97.20 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -1.28 Total: 19.17 kcal Atomic # 6 Polarization: 40.27 SS G_CDS: 6.71 Total: 46.98 kcal Atomic # 7 Polarization: -154.45 SS G_CDS: -9.05 Total: -163.50 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: 0.43 Total: -51.87 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.03 Total: 52.02 kcal Total: -96.03 -1.17 -97.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968627937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.948 kcal (2) G-P(sol) polarization free energy of solvation -96.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds