Wall clock time and date at job start Tue Mar 31 2020 18:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35854 * 126.13544 * 2 1 4 4 N 1.30168 * 109.00027 * 179.76021 * 3 2 1 5 5 C 1.35754 * 108.86989 * 0.37788 * 4 3 2 6 6 C 1.47327 * 126.23700 * 179.88667 * 5 4 3 7 7 O 1.21624 * 120.00199 * 179.69608 * 6 5 4 8 8 N 1.34775 * 119.99965 * 359.68283 * 6 5 4 9 9 C 1.46499 * 120.00274 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.85583 * 37.33993 * 9 8 6 11 11 C 1.54627 * 110.97059 * 273.55338 * 9 8 6 12 12 C 1.51286 * 104.19454 * 217.04503 * 11 9 8 13 13 O 1.21279 * 124.93933 * 195.99132 * 12 11 9 14 14 N 1.34413 * 110.11622 * 16.25141 * 12 11 9 15 15 C 1.46500 * 124.34944 * 180.40817 * 14 12 11 16 16 C 1.53946 * 113.74421 * 38.76784 * 15 14 12 17 17 N 1.47808 * 86.03830 * 222.08677 * 16 15 14 18 18 C 1.36938 * 134.45475 * 204.64952 * 17 16 15 19 19 H 1.07999 * 119.99860 * 179.86503 * 18 17 16 20 20 C 1.38810 * 119.99980 * 359.85356 * 18 17 16 21 21 N 1.31613 * 119.99957 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99683 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47441 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46903 * 120.00582 * 22 20 18 25 25 H 1.48498 * 109.47325 * 240.00344 * 22 20 18 26 26 C 1.47583 * 91.05299 * 24.54462 * 17 16 15 27 27 C 1.46766 * 111.30157 * 0.40982 * 14 12 11 28 28 C 1.35381 * 126.13792 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47311 * 270.00603 * 1 2 3 30 30 H 1.09003 * 109.47397 * 30.00586 * 1 2 3 31 31 H 1.09000 * 109.47147 * 150.00616 * 1 2 3 32 32 H 1.07994 * 125.49864 * 359.97438 * 3 2 1 33 33 H 0.96998 * 120.00087 * 0.02562 * 8 6 5 34 34 H 1.09004 * 110.48832 * 98.36900 * 11 9 8 35 35 H 1.09002 * 110.59848 * 335.77606 * 11 9 8 36 36 H 1.09003 * 112.94333 * 170.35745 * 15 14 12 37 37 H 1.09000 * 113.76508 * 336.34741 * 16 15 14 38 38 H 1.09002 * 113.77157 * 107.74218 * 16 15 14 39 39 H 0.97003 * 119.99665 * 180.02562 * 21 20 18 40 40 H 1.08997 * 113.76989 * 221.15564 * 26 17 16 41 41 H 1.08996 * 113.76637 * 89.75581 * 26 17 16 42 42 H 1.09003 * 110.24225 * 223.98700 * 27 14 12 43 43 H 1.08996 * 110.32077 * 102.01904 * 27 14 12 44 44 H 1.07998 * 126.56154 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5099 0.7137 0.0052 5 6 3.5511 -0.6432 0.0002 6 6 4.7652 -1.4777 0.0011 7 8 4.6698 -2.6902 0.0018 8 7 5.9817 -0.8975 0.0009 9 6 7.1890 -1.7273 0.0012 10 1 7.0502 -2.6147 -0.6163 11 6 7.5944 -2.1139 1.4424 12 6 9.1067 -2.0777 1.4248 13 8 9.8233 -2.5775 2.2660 14 7 9.5405 -1.4062 0.3442 15 6 10.9520 -1.1911 0.0163 16 6 11.8499 -2.4053 0.3155 17 7 12.8213 -1.4264 0.8475 18 6 14.1800 -1.4192 1.0182 19 1 14.6665 -0.5525 1.4407 20 6 14.9317 -2.5260 0.6485 21 7 14.3387 -3.5821 0.1334 22 14 16.7850 -2.5165 0.8821 23 1 17.2025 -1.2211 1.4762 24 1 17.1753 -3.6254 1.7895 25 1 17.4507 -2.6957 -0.4332 26 6 11.7398 -0.4593 1.1181 27 6 8.4184 -0.9162 -0.4649 28 6 2.2633 -1.0933 0.0005 29 1 -0.3634 0.0001 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5137 32 1 1.9258 2.1221 -0.0004 33 1 6.0578 0.0695 0.0005 34 1 7.2396 -3.1162 1.6827 35 1 7.2038 -1.3902 2.1579 36 1 11.0979 -0.7723 -0.9794 37 1 11.4434 -3.0763 1.0722 38 1 12.1946 -2.9275 -0.5770 39 1 14.8641 -4.3556 -0.1245 40 1 11.9967 0.5693 0.8650 41 1 11.3009 -0.5575 2.1109 42 1 8.6096 -1.0957 -1.5229 43 1 8.2586 0.1471 -0.2860 44 1 1.9421 -2.1245 0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094721510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:56 Heat of formation + Delta-G solvation = 70.630611 kcal Electronic energy + Delta-G solvation = -27793.386360 eV Core-core repulsion = 23749.599629 eV Total energy + Delta-G solvation = -4043.786731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.60864 -40.55038 -39.22081 -37.15785 -36.26871 -34.69560 -33.90574 -32.10505 -30.55364 -29.98168 -27.93840 -27.44276 -26.86925 -24.66378 -23.93983 -23.22396 -21.82515 -21.33605 -20.58841 -20.19323 -18.38269 -18.21297 -16.86550 -16.68944 -16.47366 -16.37725 -16.02359 -15.41325 -14.99151 -14.83021 -14.66836 -14.28537 -14.25352 -13.91504 -13.62135 -13.54770 -13.40884 -13.37008 -13.32692 -13.05924 -12.37424 -11.94151 -11.72391 -11.46898 -11.36354 -11.08802 -10.81259 -10.76480 -10.63659 -10.29271 -10.27055 -10.11469 -9.90572 -9.56426 -9.42998 -9.14747 -8.95417 -8.60421 -8.09822 -6.75160 -5.66509 -2.98269 1.20366 2.00077 2.10735 2.90028 3.02289 3.28244 3.41483 3.46638 3.52018 3.53888 3.98054 4.06174 4.30077 4.36544 4.44151 4.56561 4.59584 4.72095 4.74608 4.94904 4.98599 5.06972 5.31203 5.45059 5.51662 5.52864 5.61435 5.70147 5.79342 5.85733 5.93643 5.97240 6.29221 6.36431 6.49559 6.59229 6.66645 6.95713 7.18368 7.36189 7.47727 7.57918 7.65682 7.71053 8.05908 8.07135 8.64797 9.14306 9.80407 10.70139 11.50878 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.043475 B = 0.001954 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.888584 B =14327.178169 C =14563.131179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.462 5.462 3 C 0.186 3.814 4 N -0.463 5.463 5 C -0.063 4.063 6 C 0.608 3.392 7 O -0.540 6.540 8 N -0.706 5.706 9 C 0.136 3.864 10 H 0.112 0.888 11 C -0.167 4.167 12 C 0.516 3.484 13 O -0.509 6.509 14 N -0.606 5.606 15 C 0.099 3.901 16 C 0.153 3.847 17 N -0.605 5.605 18 C -0.219 4.219 19 H 0.081 0.919 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.112 3.888 27 C 0.099 3.901 28 C 0.035 3.965 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.212 0.788 33 H 0.411 0.589 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.253 0.747 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.409 10.620 -4.114 35.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.143 5.143 3 C -0.098 4.098 4 N -0.182 5.182 5 C -0.192 4.192 6 C 0.394 3.606 7 O -0.416 6.416 8 N -0.358 5.358 9 C 0.030 3.970 10 H 0.130 0.870 11 C -0.208 4.208 12 C 0.302 3.698 13 O -0.383 6.383 14 N -0.341 5.341 15 C -0.004 4.004 16 C 0.027 3.973 17 N -0.332 5.332 18 C -0.346 4.346 19 H 0.098 0.902 20 C -0.206 4.206 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.015 4.015 27 C -0.025 4.025 28 C -0.104 4.104 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.229 0.771 33 H 0.247 0.753 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -32.081 9.880 -3.695 33.771 hybrid contribution 0.114 0.061 0.189 0.229 sum -31.968 9.941 -3.506 33.661 Atomic orbital electron populations 1.22173 0.75656 1.05269 1.04200 1.45372 1.08359 1.06937 1.53669 1.25214 0.85130 0.93642 1.05803 1.70600 1.19612 1.10303 1.17648 1.20525 0.93105 0.90548 1.15061 1.16853 0.81833 0.86354 0.75570 1.90829 1.86779 1.13333 1.50675 1.45690 1.04469 1.10766 1.74839 1.21810 0.83524 0.94929 0.96707 0.87021 1.22832 0.94553 1.05387 0.98050 1.20610 0.89857 0.77961 0.81372 1.90785 1.61614 1.46163 1.39763 1.48487 1.06275 1.54553 1.24769 1.24062 0.75379 1.01907 0.99044 1.22781 0.84757 0.91157 0.98592 1.45715 1.00682 1.14189 1.72589 1.19035 0.79607 1.00360 1.35647 0.90160 1.24800 0.98112 0.96024 1.01620 1.69842 1.33936 1.05302 1.47522 0.86029 0.85033 0.77321 0.77278 1.20481 1.21771 1.21756 1.22920 0.88579 0.93993 0.96050 1.22188 0.85378 0.98121 0.96836 1.22638 0.90201 0.93304 1.04253 0.89961 0.88912 0.89159 0.77126 0.75303 0.87746 0.87895 0.87624 0.92639 0.91116 0.93726 0.93989 0.94210 0.89569 0.90841 0.79396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.02 11.15 59.84 0.67 0.69 16 2 N -0.46 -2.17 3.13 -125.78 -0.39 -2.56 16 3 C 0.19 1.04 12.55 -89.91 -1.13 -0.08 16 4 N -0.46 -4.17 11.01 -11.03 -0.12 -4.29 16 5 C -0.06 -0.63 6.98 -83.09 -0.58 -1.21 16 6 C 0.61 7.11 7.81 -12.56 -0.10 7.01 16 7 O -0.54 -7.82 16.62 5.26 0.09 -7.73 16 8 N -0.71 -7.13 5.18 -53.33 -0.28 -7.41 16 9 C 0.14 1.53 3.42 -66.30 -0.23 1.30 16 10 H 0.11 1.33 7.72 -51.93 -0.40 0.93 16 11 C -0.17 -2.24 6.59 -26.74 -0.18 -2.41 16 12 C 0.52 9.32 7.41 -10.86 -0.08 9.24 16 13 O -0.51 -11.85 14.60 5.56 0.08 -11.77 16 14 N -0.61 -9.91 3.15 -166.63 -0.53 -10.44 16 15 C 0.10 1.96 4.81 -70.14 -0.34 1.62 16 16 C 0.15 3.95 6.90 -2.84 -0.02 3.93 16 17 N -0.61 -16.77 3.70 -177.88 -0.66 -17.42 16 18 C -0.22 -6.51 10.70 -15.06 -0.16 -6.67 16 19 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.92 -28.74 11.39 55.49 0.63 -28.11 16 22 Si 0.91 23.14 29.55 -169.99 -5.02 18.11 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C 0.11 2.52 8.43 -2.96 -0.03 2.49 16 27 C 0.10 1.12 7.07 -3.12 -0.02 1.09 16 28 C 0.04 0.26 11.26 -16.64 -0.19 0.07 16 29 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.09 -0.14 8.14 -51.93 -0.42 -0.57 16 31 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.21 0.34 8.06 -52.49 -0.42 -0.08 16 33 H 0.41 3.56 8.08 -40.82 -0.33 3.23 16 34 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.10 1.27 8.08 -51.93 -0.42 0.85 16 36 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.06 1.58 5.75 -51.93 -0.30 1.28 16 38 H 0.07 1.96 7.16 -51.93 -0.37 1.59 16 39 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.95 7.21 -51.93 -0.37 0.58 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.69 7.77 -51.93 -0.40 0.28 16 44 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -40.35 371.29 -9.03 -49.37 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.95 Total: -0.05 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: -2.47 Total: 16.70 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -1.34 Total: -70.23 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.17 Total: -19.50 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -40.35 -9.03 -49.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094721510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.005 kcal (2) G-P(sol) polarization free energy of solvation -40.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds