Wall clock time and date at job start Tue Mar 31 2020 18:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35854 * 126.13544 * 2 1 4 4 N 1.30168 * 109.00027 * 179.76021 * 3 2 1 5 5 C 1.35754 * 108.86989 * 0.37788 * 4 3 2 6 6 C 1.47327 * 126.23700 * 179.88667 * 5 4 3 7 7 O 1.21624 * 120.00199 * 179.69608 * 6 5 4 8 8 N 1.34775 * 119.99965 * 359.68283 * 6 5 4 9 9 C 1.46499 * 120.00274 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.85583 * 37.33993 * 9 8 6 11 11 C 1.54627 * 110.97059 * 273.55338 * 9 8 6 12 12 C 1.51286 * 104.19454 * 217.04503 * 11 9 8 13 13 O 1.21279 * 124.93933 * 195.99132 * 12 11 9 14 14 N 1.34413 * 110.11622 * 16.25141 * 12 11 9 15 15 C 1.46500 * 124.34944 * 180.40817 * 14 12 11 16 16 C 1.53946 * 113.74421 * 38.76784 * 15 14 12 17 17 N 1.47808 * 86.03830 * 222.08677 * 16 15 14 18 18 C 1.36938 * 134.45475 * 204.64952 * 17 16 15 19 19 H 1.07999 * 119.99860 * 179.86503 * 18 17 16 20 20 C 1.38810 * 119.99980 * 359.85356 * 18 17 16 21 21 N 1.31613 * 119.99957 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99683 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47441 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46903 * 120.00582 * 22 20 18 25 25 H 1.48498 * 109.47325 * 240.00344 * 22 20 18 26 26 C 1.47583 * 91.05299 * 24.54462 * 17 16 15 27 27 C 1.46766 * 111.30157 * 0.40982 * 14 12 11 28 28 C 1.35381 * 126.13792 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47311 * 270.00603 * 1 2 3 30 30 H 1.09003 * 109.47397 * 30.00586 * 1 2 3 31 31 H 1.09000 * 109.47147 * 150.00616 * 1 2 3 32 32 H 1.07994 * 125.49864 * 359.97438 * 3 2 1 33 33 H 0.96998 * 120.00087 * 0.02562 * 8 6 5 34 34 H 1.09004 * 110.48832 * 98.36900 * 11 9 8 35 35 H 1.09002 * 110.59848 * 335.77606 * 11 9 8 36 36 H 1.09003 * 112.94333 * 170.35745 * 15 14 12 37 37 H 1.09000 * 113.76508 * 336.34741 * 16 15 14 38 38 H 1.09002 * 113.77157 * 107.74218 * 16 15 14 39 39 H 0.97003 * 119.99665 * 180.02562 * 21 20 18 40 40 H 1.08997 * 113.76989 * 221.15564 * 26 17 16 41 41 H 1.08996 * 113.76637 * 89.75581 * 26 17 16 42 42 H 1.09003 * 110.24225 * 223.98700 * 27 14 12 43 43 H 1.08996 * 110.32077 * 102.01904 * 27 14 12 44 44 H 1.07998 * 126.56154 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5099 0.7137 0.0052 5 6 3.5511 -0.6432 0.0002 6 6 4.7652 -1.4777 0.0011 7 8 4.6698 -2.6902 0.0018 8 7 5.9817 -0.8975 0.0009 9 6 7.1890 -1.7273 0.0012 10 1 7.0502 -2.6147 -0.6163 11 6 7.5944 -2.1139 1.4424 12 6 9.1067 -2.0777 1.4248 13 8 9.8233 -2.5775 2.2660 14 7 9.5405 -1.4062 0.3442 15 6 10.9520 -1.1911 0.0163 16 6 11.8499 -2.4053 0.3155 17 7 12.8213 -1.4264 0.8475 18 6 14.1800 -1.4192 1.0182 19 1 14.6665 -0.5525 1.4407 20 6 14.9317 -2.5260 0.6485 21 7 14.3387 -3.5821 0.1334 22 14 16.7850 -2.5165 0.8821 23 1 17.2025 -1.2211 1.4762 24 1 17.1753 -3.6254 1.7895 25 1 17.4507 -2.6957 -0.4332 26 6 11.7398 -0.4593 1.1181 27 6 8.4184 -0.9162 -0.4649 28 6 2.2633 -1.0933 0.0005 29 1 -0.3634 0.0001 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5137 32 1 1.9258 2.1221 -0.0004 33 1 6.0578 0.0695 0.0005 34 1 7.2396 -3.1162 1.6827 35 1 7.2038 -1.3902 2.1579 36 1 11.0979 -0.7723 -0.9794 37 1 11.4434 -3.0763 1.0722 38 1 12.1946 -2.9275 -0.5770 39 1 14.8641 -4.3556 -0.1245 40 1 11.9967 0.5693 0.8650 41 1 11.3009 -0.5575 2.1109 42 1 8.6096 -1.0957 -1.5229 43 1 8.2586 0.1471 -0.2860 44 1 1.9421 -2.1245 0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094721510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:55 Heat of formation + Delta-G solvation = 40.395279 kcal Electronic energy + Delta-G solvation = -27794.697463 eV Core-core repulsion = 23749.599629 eV Total energy + Delta-G solvation = -4045.097834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.07241 -41.86601 -40.27741 -38.91691 -37.61113 -35.33161 -34.90517 -34.10481 -31.75121 -30.69383 -29.20273 -28.62726 -27.74185 -26.61727 -25.32043 -24.45576 -22.57049 -22.16997 -21.93955 -21.18087 -19.78198 -18.93467 -18.76393 -17.93706 -17.58672 -17.07158 -16.88774 -16.77761 -16.53966 -15.89247 -15.77232 -15.56527 -15.18951 -14.98531 -14.74575 -14.69921 -14.59821 -14.37997 -14.05607 -13.60673 -13.55877 -13.42436 -13.39967 -13.29507 -12.82986 -12.77912 -12.58447 -12.28146 -12.00092 -11.87891 -11.53343 -11.39477 -11.13337 -11.04823 -10.69323 -10.66142 -10.14142 -9.59107 -9.56878 -8.94556 -7.92357 -5.27302 0.59829 1.43059 1.46261 1.48453 1.56481 1.57895 1.71297 1.93507 2.27295 2.48747 2.55488 3.25821 3.30708 3.46467 3.47584 3.52320 3.79846 3.85737 3.96290 4.01777 4.05746 4.25298 4.27452 4.49688 4.51135 4.53585 4.59699 4.62676 4.76243 4.81165 4.83173 4.88752 4.92650 5.11638 5.20470 5.22160 5.41624 5.46645 5.47365 5.83702 5.88930 6.14794 6.22904 6.49137 6.88157 6.89854 7.20538 7.24649 7.57293 8.52978 9.25261 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.043475 B = 0.001954 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.888584 B =14327.178169 C =14563.131179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.455 5.455 3 C 0.194 3.806 4 N -0.494 5.494 5 C -0.099 4.099 6 C 0.605 3.395 7 O -0.577 6.577 8 N -0.694 5.694 9 C 0.149 3.851 10 H 0.107 0.893 11 C -0.153 4.153 12 C 0.506 3.494 13 O -0.571 6.571 14 N -0.603 5.603 15 C 0.136 3.864 16 C 0.147 3.853 17 N -0.635 5.635 18 C -0.236 4.236 19 H 0.087 0.913 20 C -0.071 4.071 21 N -0.955 5.955 22 Si 0.986 3.014 23 H -0.262 1.262 24 H -0.296 1.296 25 H -0.285 1.285 26 C 0.114 3.886 27 C 0.102 3.898 28 C 0.037 3.963 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.250 0.750 33 H 0.420 0.580 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.139 0.861 37 H 0.020 0.980 38 H 0.043 0.957 39 H 0.249 0.751 40 H 0.071 0.929 41 H 0.023 0.977 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.759 13.577 -5.200 38.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.135 5.135 3 C -0.091 4.091 4 N -0.213 5.213 5 C -0.227 4.227 6 C 0.393 3.607 7 O -0.456 6.456 8 N -0.345 5.345 9 C 0.043 3.957 10 H 0.125 0.875 11 C -0.194 4.194 12 C 0.294 3.706 13 O -0.450 6.450 14 N -0.337 5.337 15 C 0.032 3.968 16 C 0.021 3.979 17 N -0.361 5.361 18 C -0.364 4.364 19 H 0.105 0.895 20 C -0.264 4.264 21 N -0.604 5.604 22 Si 0.814 3.186 23 H -0.186 1.186 24 H -0.223 1.223 25 H -0.212 1.212 26 C -0.012 4.012 27 C -0.021 4.021 28 C -0.104 4.104 29 H 0.111 0.889 30 H 0.135 0.865 31 H 0.117 0.883 32 H 0.266 0.734 33 H 0.259 0.741 34 H 0.117 0.883 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -34.513 12.924 -4.809 37.166 hybrid contribution 0.658 -0.811 0.568 1.189 sum -33.855 12.113 -4.241 36.206 Atomic orbital electron populations 1.22526 0.72857 1.07006 1.05461 1.45632 1.09924 1.05857 1.52083 1.25986 0.84409 0.95180 1.03476 1.70528 1.21736 1.09759 1.19315 1.20396 0.93091 0.91215 1.17995 1.17193 0.82668 0.86137 0.74673 1.90802 1.87348 1.14922 1.52561 1.45530 1.03649 1.11019 1.74336 1.21590 0.84188 0.95130 0.94802 0.87533 1.22740 0.90814 1.05690 1.00184 1.21394 0.91535 0.76891 0.80741 1.90753 1.63507 1.48637 1.42131 1.48436 1.06224 1.54051 1.24959 1.23423 0.76596 0.97245 0.99550 1.22583 0.86373 0.92550 0.96367 1.46146 1.01049 1.15932 1.73011 1.19497 0.81182 1.00680 1.35089 0.89496 1.25762 1.03151 0.95702 1.01764 1.70059 1.35607 1.05893 1.48840 0.84900 0.78956 0.77649 0.77120 1.18584 1.22348 1.21169 1.22997 0.87386 0.94733 0.96118 1.22492 0.82856 0.99562 0.97162 1.22832 0.89995 0.94461 1.03154 0.88880 0.86478 0.88261 0.73391 0.74150 0.88306 0.86412 0.84331 0.96197 0.93889 0.94249 0.91094 0.95887 0.87116 0.87570 0.78562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.17 11.15 127.77 1.42 1.25 16 2 N -0.45 -3.04 3.13 -551.86 -1.73 -4.77 16 3 C 0.19 1.60 12.55 180.10 2.26 3.86 16 4 N -0.49 -7.94 11.01 -188.82 -2.08 -10.02 16 5 C -0.10 -1.85 6.98 40.50 0.28 -1.57 16 6 C 0.61 13.76 7.81 86.63 0.68 14.44 16 7 O -0.58 -16.78 16.62 -4.11 -0.07 -16.85 16 8 N -0.69 -12.86 5.18 -440.88 -2.29 -15.15 16 9 C 0.15 3.13 3.42 46.05 0.16 3.29 16 10 H 0.11 2.44 7.72 -2.39 -0.02 2.42 16 11 C -0.15 -4.06 6.59 30.59 0.20 -3.86 16 12 C 0.51 18.60 7.41 87.90 0.65 19.25 16 13 O -0.57 -28.10 14.60 -3.03 -0.04 -28.15 16 14 N -0.60 -19.10 3.15 -799.70 -2.52 -21.62 16 15 C 0.14 5.27 4.81 46.75 0.22 5.50 16 16 C 0.15 7.92 6.90 86.44 0.60 8.51 16 17 N -0.63 -35.86 3.70 -716.69 -2.65 -38.52 16 18 C -0.24 -14.26 10.70 84.03 0.90 -13.36 16 19 H 0.09 4.96 7.83 -2.91 -0.02 4.94 16 20 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 21 N -0.96 -61.90 11.39 21.65 0.25 -61.65 16 22 Si 0.99 48.35 29.55 68.60 2.03 50.37 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 C 0.11 5.08 8.43 86.49 0.73 5.81 16 27 C 0.10 1.98 7.07 86.83 0.61 2.59 16 28 C 0.04 0.49 11.26 83.72 0.94 1.44 16 29 H 0.09 -0.40 8.14 -2.38 -0.02 -0.42 16 30 H 0.12 -0.85 8.14 -2.39 -0.02 -0.87 16 31 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.25 -0.24 8.06 -2.91 -0.02 -0.27 16 33 H 0.42 6.28 8.08 -92.71 -0.75 5.53 16 34 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 35 H 0.12 2.79 8.08 -2.39 -0.02 2.77 16 36 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 37 H 0.02 1.22 5.75 -2.39 -0.01 1.21 16 38 H 0.04 2.50 7.16 -2.39 -0.02 2.49 16 39 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.02 1.13 7.21 -2.39 -0.02 1.11 16 42 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.11 1.50 7.77 -2.39 -0.02 1.48 16 44 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -93.94 371.29 1.32 -92.62 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.29 Total: 10.44 kcal Atomic # 6 Polarization: 33.16 SS G_CDS: 10.13 Total: 43.28 kcal Atomic # 7 Polarization: -140.70 SS G_CDS: -11.02 Total: -151.72 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -0.11 Total: -45.00 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.37 kcal Total: -93.94 1.32 -92.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094721510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.019 kcal (2) G-P(sol) polarization free energy of solvation -93.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds