Wall clock time and date at job start Tue Mar 31 2020 18:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35028 * 124.88525 * 2 1 4 4 C 1.35365 * 107.22903 * 179.76743 * 3 2 1 5 5 C 1.41506 * 105.50077 * 0.34964 * 4 3 2 6 6 C 1.47708 * 126.51522 * 179.90506 * 5 4 3 7 7 O 1.21568 * 120.00188 * 359.71359 * 6 5 4 8 8 N 1.34779 * 119.99811 * 179.71770 * 6 5 4 9 9 C 1.46500 * 119.99977 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.85794 * 34.29873 * 9 8 6 11 11 C 1.54629 * 111.00052 * 270.48318 * 9 8 6 12 12 C 1.51279 * 104.19679 * 217.06979 * 11 9 8 13 13 O 1.21280 * 124.94332 * 196.21719 * 12 11 9 14 14 N 1.34420 * 110.11334 * 16.25416 * 12 11 9 15 15 C 1.46509 * 124.34752 * 180.42835 * 14 12 11 16 16 C 1.53940 * 113.73974 * 38.71669 * 15 14 12 17 17 N 1.47809 * 86.03791 * 222.08443 * 16 15 14 18 18 C 1.36938 * 134.45960 * 204.64969 * 17 16 15 19 19 H 1.07996 * 120.00248 * 179.86450 * 18 17 16 20 20 C 1.38816 * 120.00064 * 359.86313 * 18 17 16 21 21 N 1.31617 * 119.99755 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46891 * 89.99997 * 22 20 18 24 24 H 1.48493 * 109.47493 * 209.99793 * 22 20 18 25 25 H 1.48498 * 109.47269 * 330.00249 * 22 20 18 26 26 C 1.47582 * 91.04827 * 24.54799 * 17 16 15 27 27 C 1.46758 * 111.30351 * 0.40485 * 14 12 11 28 28 N 1.28463 * 124.88093 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47017 * 269.97825 * 1 2 3 30 30 H 1.09002 * 109.46953 * 29.97450 * 1 2 3 31 31 H 1.08994 * 109.47328 * 149.97695 * 1 2 3 32 32 H 1.08000 * 126.38984 * 0.02738 * 3 2 1 33 33 H 1.07999 * 127.25129 * 180.24862 * 4 3 2 34 34 H 0.96998 * 119.99710 * 359.97438 * 8 6 5 35 35 H 1.09000 * 110.49023 * 335.75115 * 11 9 8 36 36 H 1.09002 * 110.48233 * 98.39249 * 11 9 8 37 37 H 1.09003 * 112.94123 * 170.30544 * 15 14 12 38 38 H 1.08997 * 113.77316 * 336.34991 * 16 15 14 39 39 H 1.09005 * 113.76911 * 107.74495 * 16 15 14 40 40 H 0.96998 * 120.00166 * 180.02562 * 21 20 18 41 41 H 1.08998 * 113.76882 * 221.15014 * 26 17 16 42 42 H 1.09005 * 113.76545 * 89.75698 * 26 17 16 43 43 H 1.09001 * 110.25014 * 223.98099 * 27 14 12 44 44 H 1.08999 * 110.31832 * 102.02010 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1076 0.0000 4 6 3.5272 0.6971 0.0052 5 6 3.4740 -0.7170 0.0000 6 6 4.6273 -1.6399 0.0008 7 8 5.7597 -1.1978 0.0011 8 7 4.4240 -2.9723 0.0011 9 6 5.5678 -3.8877 0.0013 10 1 6.3966 -3.4731 0.5752 11 6 6.0081 -4.2248 -1.4421 12 6 6.4121 -5.6812 -1.3763 13 8 7.0735 -6.2571 -2.2139 14 7 5.9305 -6.2442 -0.2547 15 6 6.1446 -7.6426 0.1260 16 6 7.5562 -8.1641 -0.1986 17 7 6.8836 -9.3981 -0.6566 18 6 7.2647 -10.7071 -0.7847 19 1 6.5627 -11.4404 -1.1533 20 6 8.5535 -11.0917 -0.4410 21 7 9.4090 -10.1981 0.0086 22 14 9.0732 -12.8774 -0.6152 23 1 9.6354 -13.0992 -1.9717 24 1 10.1038 -13.1949 0.4057 25 1 7.8936 -13.7577 -0.4182 26 6 5.6363 -8.6537 -0.9176 27 6 5.1632 -5.2779 0.5399 28 7 2.1997 -1.0538 0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.8906 2.1305 0.0004 33 1 4.4109 1.3180 0.0105 34 1 3.5205 -3.3250 0.0012 35 1 5.1779 -4.0902 -2.1355 36 1 6.8562 -3.6066 -1.7364 37 1 5.8194 -7.8607 1.1432 38 1 8.0552 -7.6139 -0.9963 39 1 8.1852 -8.3055 0.6803 40 1 10.3097 -10.4667 0.2484 41 1 4.7352 -9.1854 -0.6116 42 1 5.5701 -8.2476 -1.9270 43 1 5.4247 -5.3645 1.5946 44 1 4.0940 -5.4390 0.4025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094814957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:51 Heat of formation + Delta-G solvation = 91.328573 kcal Electronic energy + Delta-G solvation = -27863.451808 eV Core-core repulsion = 23820.562608 eV Total energy + Delta-G solvation = -4042.889200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.03531 -40.61310 -39.32818 -37.19476 -36.32369 -34.17153 -33.81368 -32.14674 -31.20237 -30.28033 -28.10644 -27.47604 -26.87049 -24.68865 -23.86756 -23.22727 -21.90128 -21.51542 -20.58685 -20.18752 -18.30652 -18.25093 -17.05787 -16.74228 -16.71933 -16.63293 -16.07134 -15.37030 -14.95222 -14.87615 -14.57347 -14.30213 -14.10965 -13.80446 -13.56156 -13.46126 -13.42772 -13.33037 -13.12683 -13.05261 -12.40390 -11.99269 -11.77001 -11.50365 -11.39151 -11.34777 -11.12409 -10.82423 -10.65147 -10.41583 -10.13955 -9.95290 -9.71660 -9.61738 -9.47440 -9.44146 -9.06973 -8.62148 -8.13337 -6.77215 -5.67953 -2.99941 1.20884 1.74499 1.99270 2.76722 2.98011 3.14733 3.36604 3.45648 3.50609 3.51725 3.87790 4.28568 4.35109 4.44511 4.49471 4.55068 4.55816 4.77739 4.86022 4.90660 4.97491 5.25895 5.28330 5.37401 5.40759 5.47799 5.58872 5.66862 5.74044 5.82066 5.89894 5.96648 6.20406 6.28972 6.33492 6.56363 6.63294 6.92632 7.14834 7.34007 7.50029 7.54601 7.63518 7.68494 7.94978 8.05440 8.61152 9.12590 9.78739 10.68247 11.49306 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.034220 B = 0.002031 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.040692 B =13780.969817 C =14179.345493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.284 5.284 3 C -0.020 4.020 4 C -0.177 4.177 5 C -0.017 4.017 6 C 0.609 3.391 7 O -0.525 6.525 8 N -0.708 5.708 9 C 0.135 3.865 10 H 0.115 0.885 11 C -0.167 4.167 12 C 0.516 3.484 13 O -0.508 6.508 14 N -0.606 5.606 15 C 0.099 3.901 16 C 0.153 3.847 17 N -0.605 5.605 18 C -0.220 4.220 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.112 3.888 27 C 0.099 3.901 28 N -0.261 5.261 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.183 0.817 33 H 0.164 0.836 34 H 0.408 0.592 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.253 0.747 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.386 26.095 3.562 33.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.073 5.073 3 C -0.162 4.162 4 C -0.205 4.205 5 C -0.177 4.177 6 C 0.393 3.607 7 O -0.399 6.399 8 N -0.360 5.360 9 C 0.029 3.971 10 H 0.133 0.867 11 C -0.209 4.209 12 C 0.302 3.698 13 O -0.382 6.382 14 N -0.341 5.341 15 C -0.004 4.004 16 C 0.027 3.973 17 N -0.332 5.332 18 C -0.348 4.348 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.566 5.566 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.015 4.015 27 C -0.025 4.025 28 N -0.098 5.098 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.200 0.800 33 H 0.181 0.819 34 H 0.244 0.756 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.806 24.800 3.173 32.527 hybrid contribution 0.168 -0.271 -0.154 0.354 sum -20.638 24.529 3.019 32.198 Atomic orbital electron populations 1.22210 0.73030 1.05626 1.04611 1.45414 1.07890 1.03131 1.50844 1.22894 0.90979 0.93801 1.08560 1.21819 0.97435 0.93501 1.07709 1.21902 0.90620 0.94253 1.10972 1.16845 0.86649 0.81263 0.75927 1.90831 1.22484 1.77006 1.49577 1.45756 1.10021 1.05230 1.75002 1.21849 0.89680 0.89013 0.96528 0.86701 1.22840 1.04375 0.95700 0.97970 1.20595 0.79325 0.88373 0.81513 1.90789 1.37786 1.68283 1.41337 1.48496 1.52339 1.11052 1.22217 1.24070 1.01813 0.75677 0.98835 1.22785 0.90801 0.84664 0.99045 1.45712 1.08906 1.03092 1.75458 1.18980 0.96222 0.81928 1.37626 0.90222 1.24808 0.96016 0.97925 1.01797 1.69829 1.05379 1.32112 1.49257 0.86099 0.78082 0.84074 0.77367 1.21627 1.21654 1.20648 1.22918 0.91405 0.90928 0.96292 1.22191 0.96615 0.86828 0.96911 1.73493 1.02948 1.14266 1.19099 0.89560 0.88518 0.88382 0.79981 0.81864 0.75557 0.87871 0.87644 0.87621 0.92607 0.91099 0.93650 0.94009 0.94235 0.89519 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.13 11.31 59.85 0.68 0.80 16 2 N -0.28 -1.72 3.70 -68.13 -0.25 -1.98 16 3 C -0.02 -0.11 11.46 -17.17 -0.20 -0.31 16 4 C -0.18 -1.48 10.81 -39.36 -0.43 -1.90 16 5 C -0.02 -0.18 7.13 -82.76 -0.59 -0.77 16 6 C 0.61 7.03 7.82 -12.39 -0.10 6.93 16 7 O -0.53 -7.70 16.62 5.31 0.09 -7.61 16 8 N -0.71 -6.73 5.17 -53.21 -0.27 -7.01 16 9 C 0.13 1.46 3.48 -66.30 -0.23 1.22 16 10 H 0.12 1.33 7.63 -51.93 -0.40 0.93 16 11 C -0.17 -2.16 6.59 -26.74 -0.18 -2.34 16 12 C 0.52 9.12 7.42 -10.86 -0.08 9.04 16 13 O -0.51 -11.66 14.61 5.56 0.08 -11.58 16 14 N -0.61 -9.69 3.16 -166.65 -0.53 -10.22 16 15 C 0.10 1.93 4.81 -70.15 -0.34 1.59 16 16 C 0.15 3.91 6.90 -2.84 -0.02 3.89 16 17 N -0.61 -16.65 3.70 -177.90 -0.66 -17.31 16 18 C -0.22 -6.50 10.70 -15.06 -0.16 -6.66 16 19 H 0.08 2.26 7.83 -52.49 -0.41 1.84 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -28.60 11.39 55.49 0.63 -27.97 16 22 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 C 0.11 2.49 8.43 -2.97 -0.03 2.46 16 27 C 0.10 1.07 7.07 -3.13 -0.02 1.05 16 28 N -0.26 -2.30 11.67 33.42 0.39 -1.91 16 29 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.10 -0.10 8.13 -51.93 -0.42 -0.52 16 31 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 33 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.41 3.15 8.12 -40.82 -0.33 2.81 16 35 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 36 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 38 H 0.06 1.58 5.74 -51.93 -0.30 1.28 16 39 H 0.07 1.95 7.17 -51.93 -0.37 1.58 16 40 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.93 7.22 -51.93 -0.38 0.56 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.63 7.78 -51.93 -0.40 0.23 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -39.86 371.28 -7.68 -47.54 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.95 Total: -0.21 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: -1.78 Total: 14.65 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.69 Total: -66.39 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.17 Total: -19.19 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.86 -7.68 -47.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094814957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.868 kcal (2) G-P(sol) polarization free energy of solvation -39.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds