Wall clock time and date at job start Tue Mar 31 2020 18:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35028 * 124.88525 * 2 1 4 4 C 1.35365 * 107.22903 * 179.76743 * 3 2 1 5 5 C 1.41506 * 105.50077 * 0.34964 * 4 3 2 6 6 C 1.47708 * 126.51522 * 179.90506 * 5 4 3 7 7 O 1.21568 * 120.00188 * 359.71359 * 6 5 4 8 8 N 1.34779 * 119.99811 * 179.71770 * 6 5 4 9 9 C 1.46500 * 119.99977 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.85794 * 34.29873 * 9 8 6 11 11 C 1.54629 * 111.00052 * 270.48318 * 9 8 6 12 12 C 1.51279 * 104.19679 * 217.06979 * 11 9 8 13 13 O 1.21280 * 124.94332 * 196.21719 * 12 11 9 14 14 N 1.34420 * 110.11334 * 16.25416 * 12 11 9 15 15 C 1.46509 * 124.34752 * 180.42835 * 14 12 11 16 16 C 1.53940 * 113.73974 * 38.71669 * 15 14 12 17 17 N 1.47809 * 86.03791 * 222.08443 * 16 15 14 18 18 C 1.36938 * 134.45960 * 204.64969 * 17 16 15 19 19 H 1.07996 * 120.00248 * 179.86450 * 18 17 16 20 20 C 1.38816 * 120.00064 * 359.86313 * 18 17 16 21 21 N 1.31617 * 119.99755 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46891 * 89.99997 * 22 20 18 24 24 H 1.48493 * 109.47493 * 209.99793 * 22 20 18 25 25 H 1.48498 * 109.47269 * 330.00249 * 22 20 18 26 26 C 1.47582 * 91.04827 * 24.54799 * 17 16 15 27 27 C 1.46758 * 111.30351 * 0.40485 * 14 12 11 28 28 N 1.28463 * 124.88093 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47017 * 269.97825 * 1 2 3 30 30 H 1.09002 * 109.46953 * 29.97450 * 1 2 3 31 31 H 1.08994 * 109.47328 * 149.97695 * 1 2 3 32 32 H 1.08000 * 126.38984 * 0.02738 * 3 2 1 33 33 H 1.07999 * 127.25129 * 180.24862 * 4 3 2 34 34 H 0.96998 * 119.99710 * 359.97438 * 8 6 5 35 35 H 1.09000 * 110.49023 * 335.75115 * 11 9 8 36 36 H 1.09002 * 110.48233 * 98.39249 * 11 9 8 37 37 H 1.09003 * 112.94123 * 170.30544 * 15 14 12 38 38 H 1.08997 * 113.77316 * 336.34991 * 16 15 14 39 39 H 1.09005 * 113.76911 * 107.74495 * 16 15 14 40 40 H 0.96998 * 120.00166 * 180.02562 * 21 20 18 41 41 H 1.08998 * 113.76882 * 221.15014 * 26 17 16 42 42 H 1.09005 * 113.76545 * 89.75698 * 26 17 16 43 43 H 1.09001 * 110.25014 * 223.98099 * 27 14 12 44 44 H 1.08999 * 110.31832 * 102.02010 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1076 0.0000 4 6 3.5272 0.6971 0.0052 5 6 3.4740 -0.7170 0.0000 6 6 4.6273 -1.6399 0.0008 7 8 5.7597 -1.1978 0.0011 8 7 4.4240 -2.9723 0.0011 9 6 5.5678 -3.8877 0.0013 10 1 6.3966 -3.4731 0.5752 11 6 6.0081 -4.2248 -1.4421 12 6 6.4121 -5.6812 -1.3763 13 8 7.0735 -6.2571 -2.2139 14 7 5.9305 -6.2442 -0.2547 15 6 6.1446 -7.6426 0.1260 16 6 7.5562 -8.1641 -0.1986 17 7 6.8836 -9.3981 -0.6566 18 6 7.2647 -10.7071 -0.7847 19 1 6.5627 -11.4404 -1.1533 20 6 8.5535 -11.0917 -0.4410 21 7 9.4090 -10.1981 0.0086 22 14 9.0732 -12.8774 -0.6152 23 1 9.6354 -13.0992 -1.9717 24 1 10.1038 -13.1949 0.4057 25 1 7.8936 -13.7577 -0.4182 26 6 5.6363 -8.6537 -0.9176 27 6 5.1632 -5.2779 0.5399 28 7 2.1997 -1.0538 0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.8906 2.1305 0.0004 33 1 4.4109 1.3180 0.0105 34 1 3.5205 -3.3250 0.0012 35 1 5.1779 -4.0902 -2.1355 36 1 6.8562 -3.6066 -1.7364 37 1 5.8194 -7.8607 1.1432 38 1 8.0552 -7.6139 -0.9963 39 1 8.1852 -8.3055 0.6803 40 1 10.3097 -10.4667 0.2484 41 1 4.7352 -9.1854 -0.6116 42 1 5.5701 -8.2476 -1.9270 43 1 5.4247 -5.3645 1.5946 44 1 4.0940 -5.4390 0.4025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094814957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:50 Heat of formation + Delta-G solvation = 60.041376 kcal Electronic energy + Delta-G solvation = -27864.808523 eV Core-core repulsion = 23820.562608 eV Total energy + Delta-G solvation = -4044.245915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.54483 -41.89277 -40.39546 -38.93460 -37.64331 -35.30691 -34.40075 -34.07196 -31.94991 -31.40495 -29.23701 -28.80345 -27.86025 -26.62130 -25.31048 -24.36589 -22.48553 -22.39632 -22.12913 -21.12807 -19.79261 -18.89640 -18.76239 -17.97609 -17.67060 -17.25148 -17.16808 -16.97439 -16.52461 -15.94090 -15.79050 -15.61937 -15.24999 -14.87128 -14.69975 -14.63514 -14.56960 -14.06312 -14.00400 -13.56633 -13.49568 -13.41978 -13.29995 -13.29686 -12.83598 -12.81570 -12.57712 -12.30318 -12.01018 -11.93821 -11.90432 -11.53549 -11.34350 -11.08733 -10.70314 -10.29274 -10.11958 -9.93374 -9.59641 -8.95035 -7.92509 -5.27567 0.53800 1.24316 1.42642 1.46740 1.55325 1.56812 1.59906 1.86332 2.16767 2.36715 2.48608 3.24949 3.28266 3.41268 3.46394 3.49080 3.79179 3.84145 4.00035 4.03988 4.09658 4.24770 4.47195 4.50282 4.51647 4.58150 4.62083 4.74525 4.76917 4.78856 4.80688 4.84237 4.89150 4.92164 5.19692 5.21736 5.31897 5.40771 5.47025 5.83198 5.88606 5.92597 6.22333 6.40058 6.87663 6.92467 7.14622 7.20325 7.57016 8.52586 9.24820 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.034220 B = 0.002031 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.040692 B =13780.969817 C =14179.345493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.279 5.279 3 C -0.001 4.001 4 C -0.206 4.206 5 C -0.048 4.048 6 C 0.608 3.392 7 O -0.566 6.566 8 N -0.692 5.692 9 C 0.148 3.852 10 H 0.109 0.891 11 C -0.154 4.154 12 C 0.506 3.494 13 O -0.571 6.571 14 N -0.604 5.604 15 C 0.136 3.864 16 C 0.147 3.853 17 N -0.635 5.635 18 C -0.236 4.236 19 H 0.087 0.913 20 C -0.072 4.072 21 N -0.955 5.955 22 Si 0.986 3.014 23 H -0.291 1.291 24 H -0.290 1.290 25 H -0.261 1.261 26 C 0.114 3.886 27 C 0.101 3.899 28 N -0.272 5.272 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.225 0.775 33 H 0.161 0.839 34 H 0.420 0.580 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.021 0.979 39 H 0.042 0.958 40 H 0.249 0.751 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.110 0.890 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.236 27.286 4.653 37.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.068 5.068 3 C -0.144 4.144 4 C -0.234 4.234 5 C -0.206 4.206 6 C 0.394 3.606 7 O -0.442 6.442 8 N -0.345 5.345 9 C 0.042 3.958 10 H 0.127 0.873 11 C -0.195 4.195 12 C 0.294 3.706 13 O -0.450 6.450 14 N -0.337 5.337 15 C 0.032 3.968 16 C 0.021 3.979 17 N -0.362 5.362 18 C -0.365 4.365 19 H 0.105 0.895 20 C -0.265 4.265 21 N -0.604 5.604 22 Si 0.814 3.186 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.185 1.185 26 C -0.012 4.012 27 C -0.021 4.021 28 N -0.111 5.111 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.242 0.758 33 H 0.178 0.822 34 H 0.259 0.741 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.157 0.843 38 H 0.038 0.962 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.129 0.871 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.766 26.015 4.291 36.174 hybrid contribution 1.231 -0.511 -0.536 1.436 sum -23.536 25.505 3.755 34.907 Atomic orbital electron populations 1.22637 0.70325 1.07302 1.06118 1.45916 1.09386 1.02681 1.48850 1.23460 0.89811 0.95292 1.05798 1.22028 0.98965 0.93047 1.09397 1.21777 0.90774 0.94713 1.13355 1.17120 0.86655 0.81780 0.75028 1.90805 1.24137 1.77723 1.51558 1.45562 1.10139 1.04496 1.74262 1.21626 0.90086 0.89440 0.94685 0.87335 1.22753 1.04741 0.91949 1.00072 1.21392 0.78188 0.90042 0.80948 1.90758 1.40522 1.70037 1.43655 1.48441 1.52368 1.10517 1.22381 1.23417 0.96566 0.77305 0.99490 1.22589 0.93693 0.84903 0.96749 1.46152 1.11147 1.03068 1.75837 1.19452 0.96699 0.83407 1.36915 0.89495 1.25775 0.96132 1.02574 1.01985 1.70050 1.05405 1.34278 1.50631 0.84968 0.77985 0.78895 0.76791 1.21820 1.21670 1.18531 1.22998 0.90682 0.91242 0.96293 1.22502 0.97698 0.84746 0.97155 1.73428 1.02504 1.15557 1.19585 0.88085 0.85457 0.88232 0.75839 0.82176 0.74121 0.86124 0.88223 0.84340 0.96160 0.93928 0.94248 0.91078 0.95848 0.87137 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.06 11.31 127.77 1.44 1.39 16 2 N -0.28 -2.55 3.70 -369.45 -1.37 -3.91 16 3 C 0.00 -0.01 11.46 83.54 0.96 0.95 16 4 C -0.21 -3.23 10.81 22.41 0.24 -2.99 16 5 C -0.05 -0.92 7.13 42.46 0.30 -0.62 16 6 C 0.61 13.69 7.82 86.75 0.68 14.37 16 7 O -0.57 -16.82 16.62 -3.93 -0.07 -16.88 16 8 N -0.69 -11.90 5.17 -440.52 -2.28 -14.17 16 9 C 0.15 2.95 3.48 46.05 0.16 3.11 16 10 H 0.11 2.41 7.63 -2.39 -0.02 2.39 16 11 C -0.15 -3.91 6.59 30.59 0.20 -3.71 16 12 C 0.51 18.14 7.42 87.90 0.65 18.80 16 13 O -0.57 -27.67 14.61 -3.03 -0.04 -27.72 16 14 N -0.60 -18.58 3.16 -799.75 -2.52 -21.10 16 15 C 0.14 5.19 4.81 46.74 0.22 5.42 16 16 C 0.15 7.82 6.90 86.44 0.60 8.41 16 17 N -0.64 -35.63 3.70 -716.76 -2.65 -38.29 16 18 C -0.24 -14.19 10.70 84.03 0.90 -13.29 16 19 H 0.09 4.92 7.83 -2.91 -0.02 4.90 16 20 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 21 N -0.96 -61.67 11.39 21.65 0.25 -61.42 16 22 Si 0.99 48.13 29.55 68.60 2.03 50.15 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 26 C 0.11 5.01 8.43 86.48 0.73 5.74 16 27 C 0.10 1.86 7.07 86.83 0.61 2.47 16 28 N -0.27 -4.24 11.67 -48.17 -0.56 -4.80 16 29 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.13 -0.85 8.13 -2.39 -0.02 -0.86 16 31 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.23 -0.30 8.06 -2.91 -0.02 -0.32 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.42 5.31 8.12 -92.71 -0.75 4.56 16 35 H 0.12 2.66 8.08 -2.39 -0.02 2.64 16 36 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 38 H 0.02 1.24 5.74 -2.39 -0.01 1.22 16 39 H 0.04 2.46 7.17 -2.38 -0.02 2.45 16 40 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.02 1.13 7.22 -2.38 -0.02 1.11 16 43 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 44 H 0.11 1.35 7.78 -2.39 -0.02 1.33 16 Total: -1.00 -93.49 371.28 1.24 -92.25 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.29 Total: 9.73 kcal Atomic # 6 Polarization: 27.99 SS G_CDS: 8.17 Total: 36.16 kcal Atomic # 7 Polarization: -134.56 SS G_CDS: -9.14 Total: -143.70 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.11 Total: -44.60 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.15 kcal Total: -93.49 1.24 -92.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094814957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.291 kcal (2) G-P(sol) polarization free energy of solvation -93.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds