Wall clock time and date at job start Tue Mar 31 2020 18:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46846 * 2 1 4 4 C 1.46497 * 119.99960 * 263.15766 * 3 2 1 5 5 C 1.53005 * 109.46995 * 269.99883 * 4 3 2 6 6 H 1.09001 * 109.46794 * 55.00705 * 5 4 3 7 7 C 1.53003 * 109.47126 * 295.00140 * 5 4 3 8 8 C 1.47206 * 109.46975 * 175.00184 * 5 4 3 9 9 N 5.60021 * 122.37880 * 305.14715 * 2 1 3 10 10 C 1.34778 * 119.99515 * 83.15914 * 3 2 1 11 11 O 1.21361 * 119.99262 * 184.26300 * 10 3 2 12 12 C 1.49338 * 120.00181 * 4.26208 * 10 3 2 13 13 O 1.21382 * 120.00410 * 354.26221 * 12 10 3 14 14 N 1.34788 * 119.99605 * 174.26296 * 12 10 3 15 15 C 1.39925 * 119.99380 * 179.97438 * 14 12 10 16 16 C 1.40462 * 125.98633 * 359.97438 * 15 14 12 17 17 C 1.35214 * 107.87021 * 179.73485 * 16 15 14 18 18 N 1.34994 * 107.87303 * 0.42573 * 17 16 15 19 19 C 1.46498 * 125.96871 * 179.83644 * 18 17 16 20 20 C 1.50700 * 109.47178 * 124.71721 * 19 18 17 21 21 H 1.08003 * 120.00002 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00302 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99782 * 359.72722 * 22 20 19 24 24 Si 1.86796 * 120.00293 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47464 * 179.72298 * 24 22 20 26 26 H 1.48501 * 109.47206 * 299.72878 * 24 22 20 27 27 H 1.48502 * 109.47154 * 59.72555 * 24 22 20 28 28 N 1.31272 * 125.97776 * 179.97438 * 15 14 12 29 29 H 1.09001 * 109.46652 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46966 * 299.99578 * 1 2 3 31 31 H 1.08998 * 109.47476 * 59.99657 * 1 2 3 32 32 H 1.09004 * 109.46966 * 240.00422 * 2 1 3 33 33 H 1.08995 * 109.46997 * 120.00505 * 2 1 3 34 34 H 1.09002 * 109.47532 * 30.00498 * 4 3 2 35 35 H 1.09005 * 109.47182 * 150.00516 * 4 3 2 36 36 H 1.08998 * 109.46785 * 60.00016 * 7 5 4 37 37 H 1.08996 * 109.46454 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.47003 * 299.99942 * 7 5 4 39 39 H 0.96991 * 119.99876 * 0.02562 * 14 12 10 40 40 H 1.08000 * 126.06432 * 0.02562 * 16 15 14 41 41 H 1.07999 * 126.06483 * 180.26122 * 17 16 15 42 42 H 1.09005 * 109.47451 * 4.71623 * 19 18 17 43 43 H 1.08995 * 109.46995 * 244.71410 * 19 18 17 44 44 H 0.97001 * 120.00532 * 0.27032 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4050 2.0215 -1.2597 5 6 3.8900 1.7670 -1.5263 6 1 4.0841 0.6946 -1.5064 7 6 4.7274 2.4572 -0.4477 8 6 4.2507 2.3064 -2.8476 9 7 4.5291 2.7227 -3.8672 10 6 2.1118 2.0629 1.1590 11 8 2.4422 3.2306 1.1510 12 6 1.8089 1.3812 2.4527 13 8 1.3787 0.2461 2.4546 14 7 2.0132 2.0264 3.6183 15 6 1.7289 1.3878 4.8305 16 6 1.2285 0.0838 4.9789 17 6 1.0959 -0.1617 6.3019 18 7 1.4867 0.9444 6.9697 19 6 1.4999 1.1112 8.4251 20 6 2.8820 1.5122 8.8724 21 1 3.6717 1.6306 8.1452 22 6 3.1383 1.7279 10.2098 23 7 2.1754 1.5890 11.0946 24 14 4.8517 2.2243 10.7642 25 1 4.8632 2.4006 12.2386 26 1 5.8210 1.1653 10.3846 27 1 5.2329 3.5018 10.1100 28 7 1.8831 1.9027 6.0281 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.8129 1.6060 -2.0752 35 1 2.2269 3.0947 -1.1915 36 1 4.4602 2.0577 0.5306 37 1 5.7852 2.2762 -0.6380 38 1 4.5332 3.5296 -0.4678 39 1 2.3566 2.9335 3.6168 40 1 0.9957 -0.6028 4.1784 41 1 0.7382 -1.0791 6.7456 42 1 1.2226 0.1706 8.9012 43 1 0.7873 1.8857 8.7085 44 1 1.2857 1.3309 10.8069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116704607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:19 Heat of formation + Delta-G solvation = 52.982315 kcal Electronic energy + Delta-G solvation = -28010.350313 eV Core-core repulsion = 23965.798294 eV Total energy + Delta-G solvation = -4044.552019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48149 -40.54849 -38.93473 -37.71657 -36.68733 -35.03679 -33.97120 -33.69097 -31.03363 -30.62765 -29.54343 -27.99701 -26.60086 -25.18655 -24.01676 -23.36605 -22.56327 -21.18063 -20.18047 -19.56569 -18.25554 -17.88021 -17.31999 -17.25599 -16.64743 -16.22877 -15.81709 -15.32811 -15.18493 -14.87933 -14.78335 -14.27889 -13.91965 -13.80211 -13.68329 -13.54566 -13.35285 -13.23664 -12.96965 -12.68038 -12.58773 -12.43511 -12.33847 -12.13648 -11.97251 -11.85448 -11.49084 -11.48663 -11.22710 -11.21132 -10.85052 -10.61224 -10.18944 -10.11117 -9.57175 -9.22140 -9.07217 -8.62663 -8.36454 -7.69378 -6.62732 -4.37327 1.04286 1.78057 2.30019 2.33395 2.51600 2.84830 2.88277 3.35405 3.37560 3.45001 3.52812 3.56080 3.61852 4.11539 4.22747 4.33217 4.37640 4.62764 4.66026 4.90401 5.00540 5.10583 5.16092 5.20483 5.27975 5.31747 5.39232 5.46856 5.54886 5.67197 5.80107 5.86882 5.97406 6.04491 6.21929 6.29621 6.47281 6.62560 6.66683 7.08217 7.09795 7.14980 7.42795 7.60756 7.71309 7.82346 8.27746 8.39536 8.55635 9.30770 10.74988 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.002372 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.833438 B =11800.492928 C =12951.706021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.086 3.914 3 N -0.582 5.582 4 C 0.120 3.880 5 C -0.012 4.012 6 H 0.118 0.882 7 C -0.143 4.143 8 C 0.214 3.786 9 N -0.429 5.429 10 C 0.516 3.484 11 O -0.508 6.508 12 C 0.512 3.488 13 O -0.490 6.490 14 N -0.597 5.597 15 C 0.252 3.748 16 C -0.282 4.282 17 C 0.052 3.948 18 N -0.312 5.312 19 C 0.248 3.752 20 C -0.609 4.609 21 H 0.064 0.936 22 C 0.023 3.977 23 N -0.903 5.903 24 Si 1.076 2.924 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.285 1.285 28 N -0.292 5.292 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.423 0.577 40 H 0.164 0.836 41 H 0.170 0.830 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.838 -4.818 -23.372 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.035 4.035 3 N -0.316 5.316 4 C -0.004 4.004 5 C -0.035 4.035 6 H 0.136 0.864 7 C -0.201 4.201 8 C -0.105 4.105 9 N -0.104 5.104 10 C 0.299 3.701 11 O -0.383 6.383 12 C 0.292 3.708 13 O -0.363 6.363 14 N -0.246 5.246 15 C -0.001 4.001 16 C -0.314 4.314 17 C -0.097 4.097 18 N -0.094 5.094 19 C 0.130 3.870 20 C -0.647 4.647 21 H 0.082 0.918 22 C -0.181 4.181 23 N -0.538 5.538 24 Si 0.903 3.097 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.211 1.211 28 N -0.123 5.123 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.261 0.739 40 H 0.181 0.819 41 H 0.187 0.813 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.298 -2.950 -22.784 22.976 hybrid contribution -1.165 -0.877 -1.408 2.027 sum -1.463 -3.827 -24.192 24.536 Atomic orbital electron populations 1.22085 0.95120 1.02732 1.02013 1.22306 0.95499 0.80425 1.05282 1.47744 1.63122 1.15396 1.05328 1.21535 0.92217 1.01004 0.85624 1.19305 0.97228 1.01865 0.85070 0.86380 1.21845 0.99229 1.01854 0.97210 1.28894 0.93772 0.93572 0.94255 1.81257 1.08132 1.08956 1.12100 1.19907 0.78755 0.86553 0.84921 1.90811 1.45295 1.15345 1.86810 1.19878 0.80004 0.86423 0.84492 1.90619 1.42482 1.17119 1.86120 1.42021 1.62038 1.18478 1.02024 1.19001 1.02570 0.93014 0.85496 1.21515 1.16440 0.97166 0.96237 1.22594 1.01291 0.93393 0.92456 1.48876 1.44958 1.08127 1.07455 1.19814 1.00053 0.98232 0.68902 1.22084 0.94661 1.52275 0.95726 0.91791 1.25928 1.05799 0.94044 0.92371 1.70856 1.02835 1.43509 1.36645 0.83421 0.73307 0.76698 0.76256 1.20511 1.21210 1.21076 1.77435 1.24468 1.15258 0.95104 0.91164 0.91895 0.93144 0.90451 0.86214 0.88772 0.88168 0.90911 0.91658 0.90818 0.73947 0.81915 0.81295 0.93464 0.94604 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.74 37.16 0.36 -0.69 16 2 C 0.09 0.51 5.71 -4.04 -0.02 0.49 16 3 N -0.58 -4.04 2.38 -174.23 -0.41 -4.45 16 4 C 0.12 0.63 4.93 -4.04 -0.02 0.61 16 5 C -0.01 -0.06 2.97 -93.40 -0.28 -0.34 16 6 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 7 C -0.14 -0.92 7.97 37.16 0.30 -0.63 16 8 C 0.21 1.60 14.65 -20.76 -0.30 1.30 16 9 N -0.43 -4.54 18.54 42.15 0.78 -3.76 16 10 C 0.52 5.14 6.11 -11.64 -0.07 5.07 16 11 O -0.51 -5.87 14.62 5.49 0.08 -5.79 16 12 C 0.51 6.24 7.63 -11.63 -0.09 6.15 16 13 O -0.49 -6.13 8.98 5.47 0.05 -6.08 16 14 N -0.60 -8.66 5.43 -11.58 -0.06 -8.72 16 15 C 0.25 4.63 8.10 -154.56 -1.25 3.38 16 16 C -0.28 -4.89 9.60 -39.82 -0.38 -5.28 16 17 C 0.05 0.95 11.43 -17.24 -0.20 0.75 16 18 N -0.31 -6.87 3.67 -62.56 -0.23 -7.10 16 19 C 0.25 6.01 5.57 -5.19 -0.03 5.98 16 20 C -0.61 -16.61 9.24 -34.44 -0.32 -16.93 16 21 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 22 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 23 N -0.90 -25.71 13.65 55.43 0.76 -24.96 16 24 Si 1.08 24.40 29.90 -169.99 -5.08 19.31 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 N -0.29 -6.40 12.42 31.41 0.39 -6.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.56 7.06 -51.93 -0.37 0.20 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.26 8.02 -51.93 -0.42 -0.16 16 33 H 0.12 0.91 5.37 -51.94 -0.28 0.64 16 34 H 0.09 0.31 8.07 -51.93 -0.42 -0.11 16 35 H 0.10 0.64 7.37 -51.93 -0.38 0.26 16 36 H 0.07 0.55 6.14 -51.93 -0.32 0.23 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 39 H 0.42 5.67 8.31 -40.82 -0.34 5.33 16 40 H 0.16 2.54 5.91 -52.49 -0.31 2.23 16 41 H 0.17 2.44 8.06 -52.49 -0.42 2.01 16 42 H 0.05 1.10 7.94 -51.93 -0.41 0.69 16 43 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 44 H 0.27 7.41 7.22 -40.82 -0.29 7.11 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -32.70 375.96 -6.16 -38.86 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.69 Total: 2.63 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.40 Total: 0.41 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 1.22 Total: -55.00 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.13 Total: -11.88 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.70 -6.16 -38.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116704607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.840 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds