Wall clock time and date at job start Tue Mar 31 2020 17:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46827 * 2 1 4 4 C 1.53000 * 109.46929 * 119.99883 * 2 1 3 5 5 C 1.53003 * 109.47314 * 185.00476 * 4 2 1 6 6 H 1.09000 * 109.46317 * 304.99944 * 5 4 2 7 7 C 1.53001 * 109.47243 * 185.00047 * 5 4 2 8 8 N 1.46494 * 109.47057 * 64.99789 * 5 4 2 9 9 C 1.34784 * 119.99635 * 205.00313 * 8 5 4 10 10 O 1.21565 * 119.99932 * 0.02562 * 9 8 5 11 11 C 1.47682 * 119.99718 * 179.97438 * 9 8 5 12 12 C 1.39912 * 120.39031 * 0.02562 * 11 9 8 13 13 N 1.31446 * 121.13919 * 180.02562 * 12 11 9 14 14 C 1.32475 * 121.80422 * 359.97438 * 13 12 11 15 15 N 1.37880 * 133.44137 * 179.97438 * 14 13 12 16 16 H 0.96994 * 126.25254 * 359.97438 * 15 14 13 17 17 C 1.36521 * 107.49578 * 180.02562 * 15 14 13 18 18 O 1.35260 * 125.02065 * 180.02562 * 17 15 14 19 19 N 1.30720 * 109.95017 * 359.97438 * 17 15 14 20 20 C 1.35887 * 109.40594 * 0.02562 * 19 17 15 21 21 C 1.39408 * 133.63774 * 180.32870 * 20 19 17 22 22 N 1.46494 * 109.47421 * 239.99743 * 2 1 3 23 23 C 1.36936 * 119.99853 * 84.99950 * 22 2 1 24 24 H 1.08001 * 120.00108 * 0.02562 * 23 22 2 25 25 C 1.38817 * 119.99764 * 179.97438 * 23 22 2 26 26 N 1.31613 * 119.99906 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99904 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.46884 * 60.00296 * 27 25 23 29 29 H 1.48492 * 109.47244 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47027 * 300.00399 * 27 25 23 31 31 H 1.09002 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47605 * 299.99960 * 1 2 3 33 33 H 1.09006 * 109.47053 * 60.00300 * 1 2 3 34 34 H 1.08999 * 109.47324 * 64.99862 * 4 2 1 35 35 H 1.09010 * 109.46715 * 305.00309 * 4 2 1 36 36 H 1.08991 * 109.46933 * 179.97438 * 7 5 4 37 37 H 1.09000 * 109.46920 * 299.99865 * 7 5 4 38 38 H 1.08996 * 109.46997 * 59.99455 * 7 5 4 39 39 H 0.96995 * 120.00292 * 25.27746 * 8 5 4 40 40 H 1.07998 * 119.42892 * 359.97438 * 12 11 9 41 41 H 0.96699 * 114.00374 * 90.00057 * 18 17 15 42 42 H 1.08002 * 120.96884 * 359.91096 * 21 20 19 43 43 H 0.97001 * 120.00176 * 265.00721 * 22 2 1 44 44 H 0.97009 * 119.99792 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3139 6 1 3.9953 -0.9922 0.3870 7 6 4.0851 -1.4382 2.4927 8 7 3.9478 0.7894 1.4926 9 6 5.1611 1.2136 1.0869 10 8 5.9373 0.4323 0.5722 11 6 5.5471 2.6277 1.2665 12 6 4.6598 3.5339 1.8574 13 7 4.9879 4.7959 2.0241 14 6 6.1661 5.2670 1.6438 15 7 6.7510 6.5144 1.6987 16 1 6.3503 7.3204 2.0601 17 6 7.9968 6.4081 1.1506 18 8 8.8794 7.4255 1.0259 19 7 8.2110 5.1776 0.7651 20 6 7.1167 4.4209 1.0417 21 6 6.8056 3.0748 0.8550 22 7 2.0184 -0.6906 -1.1961 23 6 2.1492 -0.0075 -2.3756 24 1 1.8927 1.0405 -2.4241 25 6 2.6125 -0.6618 -3.5089 26 7 2.9255 -1.9388 -3.4497 27 14 2.7916 0.2702 -5.1179 28 1 3.7467 1.3926 -4.9360 29 1 3.3005 -0.6482 -6.1679 30 1 1.4694 0.8070 -5.5288 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.7516 -1.7715 1.2057 35 1 1.6052 -0.2616 2.1370 36 1 5.1713 -1.3616 2.5384 37 1 3.6544 -1.0593 3.4195 38 1 3.8000 -2.4818 2.3597 39 1 3.3298 1.4120 1.9065 40 1 3.6884 3.1909 2.1814 41 1 9.4695 7.5295 1.7848 42 1 7.5145 2.3985 0.4005 43 1 2.2490 -1.6318 -1.1525 44 1 3.2489 -2.3962 -4.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134790452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:57 Heat of formation + Delta-G solvation = 24.399891 kcal Electronic energy + Delta-G solvation = -28347.958643 eV Core-core repulsion = 24302.167197 eV Total energy + Delta-G solvation = -4045.791446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.73578 -40.02682 -38.76377 -37.30011 -36.72883 -34.50046 -34.01622 -32.26380 -31.70929 -30.83425 -29.26214 -28.54380 -26.30603 -24.63458 -23.97328 -23.55211 -22.24709 -21.46649 -20.48872 -19.76693 -19.60592 -18.54944 -18.23374 -17.15891 -16.96142 -16.50518 -16.02499 -15.49569 -15.05347 -14.74706 -14.50240 -14.15192 -13.89360 -13.72478 -13.59825 -13.29272 -13.01108 -12.80955 -12.68488 -12.52246 -12.12028 -11.97649 -11.70710 -11.58638 -11.52690 -11.31951 -11.01108 -10.77243 -10.58305 -10.40089 -10.20601 -9.98733 -9.87182 -9.56787 -9.42757 -9.20807 -8.84808 -8.82475 -8.70528 -6.87295 -5.68028 -2.95831 0.37167 0.56644 1.68589 2.16785 2.93227 3.04526 3.38763 3.50247 3.55389 3.55529 3.74507 3.89272 4.31502 4.51101 4.59115 4.67052 4.70417 5.00931 5.17695 5.34116 5.43153 5.50564 5.65674 5.70801 5.75117 5.78500 5.91172 5.96437 6.03673 6.07857 6.13436 6.16229 6.31709 6.38424 6.46716 6.59619 6.72129 6.81595 6.94364 6.98741 7.10626 7.17688 7.43927 7.72999 7.77057 8.45782 8.50551 9.61907 10.19030 10.53020 11.54624 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.003313 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.722284 B = 8448.803215 C = 9766.191931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.709 5.709 9 C 0.568 3.432 10 O -0.522 6.522 11 C -0.185 4.185 12 C 0.177 3.823 13 N -0.483 5.483 14 C 0.266 3.734 15 N -0.587 5.587 16 H 0.429 0.571 17 C 0.463 3.537 18 O -0.436 6.436 19 N -0.466 5.466 20 C 0.006 3.994 21 C 0.048 3.952 22 N -0.720 5.720 23 C -0.235 4.235 24 H 0.066 0.934 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.901 3.099 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.288 1.288 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.393 0.607 40 H 0.172 0.828 41 H 0.413 0.587 42 H 0.160 0.840 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 14.887 18.737 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.126 0.874 7 C -0.220 4.220 8 N -0.361 5.361 9 C 0.353 3.647 10 O -0.398 6.398 11 C -0.193 4.193 12 C 0.009 3.991 13 N -0.196 5.196 14 C 0.030 3.970 15 N -0.215 5.215 16 H 0.269 0.731 17 C 0.157 3.843 18 O -0.238 6.238 19 N -0.197 5.197 20 C -0.114 4.114 21 C 0.020 3.980 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.084 0.916 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.733 3.267 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.215 1.215 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.227 0.773 40 H 0.189 0.811 41 H 0.272 0.728 42 H 0.178 0.822 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.347 14.866 17.626 23.916 hybrid contribution -0.270 0.924 -0.224 0.989 sum 6.077 15.790 17.402 24.271 Atomic orbital electron populations 1.22464 0.99572 1.00802 0.99760 1.20228 0.91557 0.95558 0.86573 0.93618 1.22184 0.93606 1.02367 0.98858 1.21084 0.95210 0.79575 1.00092 0.87365 1.22188 1.01595 1.00238 0.97945 1.45848 1.15985 1.12005 1.62223 1.17659 0.82424 0.86181 0.78446 1.90829 1.51058 1.55530 1.42415 1.20801 0.96065 0.96165 1.06307 1.22755 0.98385 0.85899 0.92071 1.66364 1.15708 1.16310 1.21168 1.18700 0.92505 0.85749 1.00065 1.42997 1.15341 1.10084 1.53054 0.73093 1.20155 0.81866 0.87262 0.94990 1.84870 1.46825 1.46154 1.45908 1.70736 1.25646 0.99454 1.23837 1.19317 0.92079 0.95054 1.04951 1.20901 0.94912 0.91601 0.90555 1.42379 1.77979 1.10545 1.05245 1.19101 1.36525 0.93629 0.87375 0.91589 1.24676 1.02166 0.95917 0.97897 1.69632 1.50869 1.08594 1.28867 0.86354 0.77640 0.78763 0.83964 1.21366 1.21716 1.21456 0.93543 0.94708 0.92939 0.90485 0.91967 0.92432 0.93078 0.91638 0.77285 0.81072 0.72785 0.82236 0.78327 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.13 2.84 -67.93 -0.19 2.93 16 3 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.89 4.29 -26.73 -0.11 -2.00 16 5 C 0.14 2.20 2.52 -67.93 -0.17 2.03 16 6 H 0.11 2.22 7.05 -51.93 -0.37 1.85 16 7 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 8 N -0.71 -9.66 4.40 -54.80 -0.24 -9.90 16 9 C 0.57 9.07 7.74 -12.40 -0.10 8.97 16 10 O -0.52 -10.62 16.06 5.31 0.09 -10.53 16 11 C -0.19 -2.50 5.89 -104.84 -0.62 -3.12 16 12 C 0.18 1.97 10.69 -17.09 -0.18 1.79 16 13 N -0.48 -5.71 10.36 -11.91 -0.12 -5.84 16 14 C 0.27 3.18 8.45 -155.41 -1.31 1.87 16 15 N -0.59 -5.08 6.23 -13.35 -0.08 -5.16 16 16 H 0.43 2.27 8.96 -40.82 -0.37 1.90 16 17 C 0.46 4.42 9.39 -88.83 -0.83 3.58 16 18 O -0.44 -2.68 13.63 -17.47 -0.24 -2.92 16 19 N -0.47 -6.07 11.32 -12.21 -0.14 -6.21 16 20 C 0.01 0.08 7.22 -84.67 -0.61 -0.53 16 21 C 0.05 0.68 9.75 -38.58 -0.38 0.30 16 22 N -0.72 -17.38 4.49 -53.43 -0.24 -17.62 16 23 C -0.23 -6.50 9.93 -15.06 -0.15 -6.65 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 27 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 30 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.39 3.99 6.64 -40.82 -0.27 3.72 16 40 H 0.17 1.33 6.39 -52.49 -0.34 0.99 16 41 H 0.41 0.12 9.06 45.56 0.41 0.53 16 42 H 0.16 2.29 7.72 -52.49 -0.41 1.89 16 43 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 44 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -37.38 376.06 -8.63 -46.01 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -4.97 Total: 11.57 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -4.05 Total: 4.58 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -0.10 Total: -72.49 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.15 Total: -13.45 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.38 -8.63 -46.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134790452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.407 kcal (2) G-P(sol) polarization free energy of solvation -37.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds