Wall clock time and date at job start Tue Mar 31 2020 17:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46827 * 2 1 4 4 C 1.53000 * 109.46929 * 119.99883 * 2 1 3 5 5 C 1.53003 * 109.47314 * 185.00476 * 4 2 1 6 6 H 1.09000 * 109.46317 * 304.99944 * 5 4 2 7 7 C 1.53001 * 109.47243 * 185.00047 * 5 4 2 8 8 N 1.46494 * 109.47057 * 64.99789 * 5 4 2 9 9 C 1.34784 * 119.99635 * 205.00313 * 8 5 4 10 10 O 1.21565 * 119.99932 * 0.02562 * 9 8 5 11 11 C 1.47682 * 119.99718 * 179.97438 * 9 8 5 12 12 C 1.39912 * 120.39031 * 0.02562 * 11 9 8 13 13 N 1.31446 * 121.13919 * 180.02562 * 12 11 9 14 14 C 1.32475 * 121.80422 * 359.97438 * 13 12 11 15 15 N 1.37880 * 133.44137 * 179.97438 * 14 13 12 16 16 H 0.96994 * 126.25254 * 359.97438 * 15 14 13 17 17 C 1.36521 * 107.49578 * 180.02562 * 15 14 13 18 18 O 1.35260 * 125.02065 * 180.02562 * 17 15 14 19 19 N 1.30720 * 109.95017 * 359.97438 * 17 15 14 20 20 C 1.35887 * 109.40594 * 0.02562 * 19 17 15 21 21 C 1.39408 * 133.63774 * 180.32870 * 20 19 17 22 22 N 1.46494 * 109.47421 * 239.99743 * 2 1 3 23 23 C 1.36936 * 119.99853 * 84.99950 * 22 2 1 24 24 H 1.08001 * 120.00108 * 0.02562 * 23 22 2 25 25 C 1.38817 * 119.99764 * 179.97438 * 23 22 2 26 26 N 1.31613 * 119.99906 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99904 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.46884 * 60.00296 * 27 25 23 29 29 H 1.48492 * 109.47244 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47027 * 300.00399 * 27 25 23 31 31 H 1.09002 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47605 * 299.99960 * 1 2 3 33 33 H 1.09006 * 109.47053 * 60.00300 * 1 2 3 34 34 H 1.08999 * 109.47324 * 64.99862 * 4 2 1 35 35 H 1.09010 * 109.46715 * 305.00309 * 4 2 1 36 36 H 1.08991 * 109.46933 * 179.97438 * 7 5 4 37 37 H 1.09000 * 109.46920 * 299.99865 * 7 5 4 38 38 H 1.08996 * 109.46997 * 59.99455 * 7 5 4 39 39 H 0.96995 * 120.00292 * 25.27746 * 8 5 4 40 40 H 1.07998 * 119.42892 * 359.97438 * 12 11 9 41 41 H 0.96699 * 114.00374 * 90.00057 * 18 17 15 42 42 H 1.08002 * 120.96884 * 359.91096 * 21 20 19 43 43 H 0.97001 * 120.00176 * 265.00721 * 22 2 1 44 44 H 0.97009 * 119.99792 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3139 6 1 3.9953 -0.9922 0.3870 7 6 4.0851 -1.4382 2.4927 8 7 3.9478 0.7894 1.4926 9 6 5.1611 1.2136 1.0869 10 8 5.9373 0.4323 0.5722 11 6 5.5471 2.6277 1.2665 12 6 4.6598 3.5339 1.8574 13 7 4.9879 4.7959 2.0241 14 6 6.1661 5.2670 1.6438 15 7 6.7510 6.5144 1.6987 16 1 6.3503 7.3204 2.0601 17 6 7.9968 6.4081 1.1506 18 8 8.8794 7.4255 1.0259 19 7 8.2110 5.1776 0.7651 20 6 7.1167 4.4209 1.0417 21 6 6.8056 3.0748 0.8550 22 7 2.0184 -0.6906 -1.1961 23 6 2.1492 -0.0075 -2.3756 24 1 1.8927 1.0405 -2.4241 25 6 2.6125 -0.6618 -3.5089 26 7 2.9255 -1.9388 -3.4497 27 14 2.7916 0.2702 -5.1179 28 1 3.7467 1.3926 -4.9360 29 1 3.3005 -0.6482 -6.1679 30 1 1.4694 0.8070 -5.5288 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.7516 -1.7715 1.2057 35 1 1.6052 -0.2616 2.1370 36 1 5.1713 -1.3616 2.5384 37 1 3.6544 -1.0593 3.4195 38 1 3.8000 -2.4818 2.3597 39 1 3.3298 1.4120 1.9065 40 1 3.6884 3.1909 2.1814 41 1 9.4695 7.5295 1.7848 42 1 7.5145 2.3985 0.4005 43 1 2.2490 -1.6318 -1.1525 44 1 3.2489 -2.3962 -4.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134790452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:56 Heat of formation + Delta-G solvation = -8.034961 kcal Electronic energy + Delta-G solvation = -28349.365124 eV Core-core repulsion = 24302.167197 eV Total energy + Delta-G solvation = -4047.197926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.59431 -41.16740 -39.66933 -38.30784 -37.87562 -36.06421 -34.93288 -34.02403 -32.86500 -31.98605 -30.47855 -30.11028 -27.52749 -25.75348 -25.49591 -24.84410 -23.11610 -22.59040 -21.73922 -21.16265 -20.38695 -19.52997 -19.27630 -19.00719 -17.82811 -17.55894 -17.00921 -16.75092 -16.44492 -16.03164 -15.62712 -15.55532 -15.47488 -15.01862 -14.81583 -14.45448 -14.21882 -14.21257 -13.56118 -13.45600 -13.43038 -13.29130 -13.11009 -12.89111 -12.73908 -12.61961 -12.45160 -12.23284 -12.19454 -12.15052 -11.75760 -11.50990 -11.35548 -11.20278 -10.86820 -10.46468 -10.23297 -9.92725 -9.69817 -8.90002 -7.89031 -5.13171 -0.55338 -0.39370 0.94045 1.35276 1.43223 1.46592 1.51184 1.80338 2.05518 2.48991 2.58380 2.69055 3.06797 3.44165 3.45690 3.60985 3.71776 3.74825 3.89275 4.06922 4.11834 4.22223 4.47822 4.48563 4.62162 4.75710 4.77117 4.84670 4.87226 4.91505 5.01089 5.11379 5.17493 5.17759 5.31259 5.43053 5.48711 5.55210 5.66815 5.68153 5.71410 6.34298 6.34823 6.40418 6.59538 6.63807 7.29992 7.40703 8.22773 8.41040 9.34675 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.003313 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.722284 B = 8448.803215 C = 9766.191931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.161 3.839 3 H 0.047 0.953 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.048 0.952 7 C -0.152 4.152 8 N -0.693 5.693 9 C 0.565 3.435 10 O -0.579 6.579 11 C -0.192 4.192 12 C 0.187 3.813 13 N -0.479 5.479 14 C 0.264 3.736 15 N -0.569 5.569 16 H 0.447 0.553 17 C 0.488 3.512 18 O -0.432 6.432 19 N -0.511 5.511 20 C -0.011 4.011 21 C 0.029 3.971 22 N -0.731 5.731 23 C -0.223 4.223 24 H 0.070 0.930 25 C -0.077 4.077 26 N -0.968 5.968 27 Si 0.957 3.043 28 H -0.289 1.289 29 H -0.298 1.298 30 H -0.275 1.275 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.037 0.963 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.413 0.587 40 H 0.210 0.790 41 H 0.441 0.559 42 H 0.140 0.860 43 H 0.370 0.630 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 17.765 21.395 28.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 H 0.065 0.935 4 C -0.156 4.156 5 C 0.042 3.958 6 H 0.067 0.933 7 C -0.210 4.210 8 N -0.345 5.345 9 C 0.351 3.649 10 O -0.459 6.459 11 C -0.200 4.200 12 C 0.019 3.981 13 N -0.192 5.192 14 C 0.026 3.974 15 N -0.198 5.198 16 H 0.291 0.709 17 C 0.181 3.819 18 O -0.238 6.238 19 N -0.243 5.243 20 C -0.130 4.130 21 C 0.001 3.999 22 N -0.371 5.371 23 C -0.355 4.355 24 H 0.088 0.912 25 C -0.269 4.269 26 N -0.620 5.620 27 Si 0.788 3.212 28 H -0.216 1.216 29 H -0.224 1.224 30 H -0.202 1.202 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.252 0.748 40 H 0.226 0.774 41 H 0.305 0.695 42 H 0.158 0.842 43 H 0.202 0.798 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.621 17.848 20.372 27.476 hybrid contribution 0.314 0.199 -0.952 1.022 sum 4.936 18.047 19.420 26.967 Atomic orbital electron populations 1.22316 0.97792 1.00800 1.00746 1.20570 0.92598 0.95478 0.86018 0.93539 1.22100 0.92491 1.02410 0.98636 1.20892 0.95805 0.80498 0.98610 0.93323 1.22090 1.00447 1.00248 0.98222 1.45683 1.15561 1.11916 1.61357 1.18065 0.82446 0.86833 0.77527 1.90802 1.52820 1.57200 1.45109 1.20616 0.96519 0.95130 1.07767 1.23225 0.98975 0.85190 0.90756 1.66519 1.15321 1.16263 1.21098 1.18874 0.92276 0.86641 0.99595 1.42912 1.14817 1.09767 1.52306 0.70931 1.20183 0.82271 0.86883 0.92523 1.84853 1.46720 1.44481 1.47710 1.70697 1.26312 1.01090 1.26248 1.19362 0.93016 0.94991 1.05669 1.20861 0.95298 0.92180 0.91516 1.42602 1.78160 1.10107 1.06265 1.19467 1.33774 0.93762 0.88536 0.91241 1.25376 1.03760 0.96790 1.01020 1.69780 1.53183 1.10010 1.29017 0.85446 0.77808 0.77331 0.80662 1.21582 1.22419 1.20155 0.94061 0.90210 0.95409 0.90500 0.86938 0.94364 0.89550 0.91227 0.74838 0.77404 0.69468 0.84177 0.79831 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.87 9.49 71.98 0.68 -4.19 16 2 C 0.16 5.60 2.84 44.99 0.13 5.73 16 3 H 0.05 1.62 7.56 -2.39 -0.02 1.60 16 4 C -0.12 -3.06 4.29 30.60 0.13 -2.93 16 5 C 0.15 4.38 2.52 44.99 0.11 4.49 16 6 H 0.05 2.09 7.05 -2.39 -0.02 2.07 16 7 C -0.15 -3.71 9.48 71.98 0.68 -3.02 16 8 N -0.69 -18.02 4.40 -445.56 -1.96 -19.98 16 9 C 0.56 18.49 7.74 86.74 0.67 19.16 16 10 O -0.58 -25.28 16.06 -3.92 -0.06 -25.34 16 11 C -0.19 -5.21 5.89 -20.01 -0.12 -5.33 16 12 C 0.19 3.76 10.69 85.16 0.91 4.67 16 13 N -0.48 -10.19 10.36 -191.60 -1.99 -12.17 16 14 C 0.26 5.87 8.45 133.83 1.13 7.00 16 15 N -0.57 -8.46 6.23 -306.99 -1.91 -10.37 16 16 H 0.45 3.28 8.96 -92.71 -0.83 2.45 16 17 C 0.49 8.39 9.39 179.72 1.69 10.07 16 18 O -0.43 -4.11 13.63 -85.44 -1.16 -5.28 16 19 N -0.51 -13.21 11.32 -306.41 -3.47 -16.68 16 20 C -0.01 -0.30 7.22 39.42 0.28 -0.01 16 21 C 0.03 0.87 9.75 22.92 0.22 1.10 16 22 N -0.73 -35.69 4.49 -322.95 -1.45 -37.14 16 23 C -0.22 -12.49 9.93 84.03 0.83 -11.66 16 24 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 25 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 26 N -0.97 -61.44 13.06 21.65 0.28 -61.16 16 27 Si 0.96 48.68 29.55 68.60 2.03 50.71 16 28 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 29 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 30 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.41 7.00 6.64 -92.71 -0.62 6.38 16 40 H 0.21 2.38 6.39 -2.91 -0.02 2.37 16 41 H 0.44 -1.17 9.06 -74.06 -0.67 -1.84 16 42 H 0.14 4.55 7.72 -2.91 -0.02 4.53 16 43 H 0.37 19.82 7.80 -92.71 -0.72 19.10 16 44 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -86.87 376.06 -3.61 -90.48 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -1.74 Total: 26.01 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 7.83 Total: 20.93 kcal Atomic # 7 Polarization: -147.01 SS G_CDS: -10.49 Total: -157.51 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -1.23 Total: -30.62 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -86.87 -3.61 -90.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134790452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.445 kcal (2) G-P(sol) polarization free energy of solvation -86.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds