Wall clock time and date at job start Tue Mar 31 2020 18:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47369 * 2 1 4 4 C 1.53006 * 109.46825 * 240.00486 * 2 1 3 5 5 N 1.46898 * 109.47138 * 65.00038 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46922 * 90.00327 * 14 12 10 16 16 H 1.48500 * 109.47032 * 210.00074 * 14 12 10 17 17 H 1.48489 * 109.47076 * 330.00276 * 14 12 10 18 18 C 1.52994 * 109.46945 * 120.00372 * 2 1 3 19 19 N 1.46496 * 109.47355 * 294.99481 * 18 2 1 20 20 C 1.34773 * 119.99934 * 180.02562 * 19 18 2 21 21 O 1.21614 * 120.00264 * 359.97438 * 20 19 18 22 22 C 1.47380 * 119.99920 * 180.02562 * 20 19 18 23 23 C 1.38130 * 126.46725 * 0.02601 * 22 20 19 24 24 N 1.34430 * 108.38727 * 179.97438 * 23 22 20 25 25 H 0.97001 * 125.38949 * 179.97438 * 24 23 22 26 26 C 1.37705 * 109.22150 * 359.97438 * 24 23 22 27 27 C 1.43198 * 125.84376 * 180.02562 * 26 24 23 28 28 N 9.61765 * 89.49154 * 83.60271 * 2 1 3 29 29 C 1.36354 * 108.31439 * 359.72907 * 26 24 23 30 30 H 1.09000 * 109.46878 * 300.00031 * 1 2 3 31 31 H 1.08999 * 109.47096 * 59.99651 * 1 2 3 32 32 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46770 * 304.99985 * 4 2 1 34 34 H 1.08995 * 109.47019 * 185.00198 * 4 2 1 35 35 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 36 36 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 37 37 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 38 38 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 39 39 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 40 40 H 1.08997 * 109.47133 * 55.00232 * 18 2 1 41 41 H 1.09003 * 109.46947 * 174.99410 * 18 2 1 42 42 H 0.97001 * 119.99813 * 0.02562 * 19 18 2 43 43 H 1.08000 * 125.80605 * 0.03126 * 23 22 20 44 44 H 1.07999 * 126.49985 * 180.26927 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6513 0.0376 -2.4457 6 6 2.1246 -0.6269 -3.6674 7 6 1.7076 0.1783 -4.8710 8 8 1.0785 1.2050 -4.7253 9 7 2.0338 -0.2425 -6.1091 10 6 1.6548 0.4904 -7.2041 11 1 1.0946 1.4045 -7.0745 12 6 1.9915 0.0569 -8.4806 13 7 2.6736 -1.0552 -8.6383 14 14 1.4746 1.0551 -9.9726 15 1 2.5340 2.0434 -10.2982 16 1 1.2724 0.1468 -11.1299 17 1 0.2065 1.7684 -9.6757 18 6 2.0400 -0.7213 1.2492 19 7 1.6525 0.0352 2.4423 20 6 1.9965 -0.4133 3.6658 21 8 2.6282 -1.4463 3.7793 22 6 1.6063 0.3475 4.8662 23 6 0.8912 1.5290 4.8928 24 7 0.7392 1.9038 6.1749 25 1 0.2743 2.7002 6.4760 26 6 1.3479 0.9784 6.9930 27 6 1.4003 1.0294 8.4231 28 7 1.4447 1.0716 9.5574 29 6 1.8866 0.0017 6.2086 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6053 -1.7197 -1.2953 34 1 3.1262 -0.7995 -1.2057 35 1 1.9881 0.9875 -2.3967 36 1 3.2116 -0.7049 -3.6407 37 1 1.6902 -1.6247 -3.7298 38 1 2.5372 -1.0633 -6.2255 39 1 2.9083 -1.3580 -9.5294 40 1 1.6054 -1.7198 1.2950 41 1 3.1263 -0.7996 1.2054 42 1 1.1484 0.8590 2.3518 43 1 0.5170 2.0607 4.0305 44 1 2.4276 -0.8692 6.5479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270386274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:04 Heat of formation + Delta-G solvation = -3.713299 kcal Electronic energy + Delta-G solvation = -26015.392032 eV Core-core repulsion = 21968.381507 eV Total energy + Delta-G solvation = -4047.010525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10737 -39.59716 -38.36439 -37.17281 -37.00448 -34.89503 -33.87146 -32.58951 -31.90705 -31.20073 -30.36014 -27.42111 -26.86238 -24.97505 -23.64168 -23.17043 -22.49918 -20.79568 -20.67433 -19.82454 -19.12807 -17.87951 -16.94669 -16.69575 -16.22748 -15.97968 -15.73584 -15.61982 -15.17173 -14.79101 -14.67454 -14.51861 -14.29182 -14.03290 -13.68495 -13.64141 -13.55392 -13.43197 -13.16376 -13.13197 -12.86426 -12.60008 -12.38683 -11.93564 -11.68446 -11.52505 -11.15887 -11.07515 -10.99633 -10.88859 -10.40188 -10.26897 -10.22024 -9.80651 -9.51551 -9.31995 -9.00284 -8.46979 -8.06192 -7.96367 -6.42300 -3.83217 0.73823 1.28495 1.66279 2.52611 2.80017 2.86873 3.17162 3.17962 3.26004 3.31768 3.43987 3.90524 4.08427 4.22239 4.30686 4.31143 4.59471 4.70529 4.78664 4.93243 5.09909 5.17429 5.25679 5.30507 5.33713 5.47820 5.61587 5.66885 5.75763 5.82762 5.86830 5.87669 5.96278 5.98522 6.07564 6.22437 6.26532 6.38001 6.45669 6.84541 7.19148 7.25008 7.54496 7.64362 8.00474 8.05698 8.60649 9.17243 9.53939 10.05188 10.75412 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.043538 B = 0.001390 C = 0.001359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.969221 B =20136.382016 C =20599.617111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.065 3.935 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.125 3.875 19 N -0.724 5.724 20 C 0.587 3.413 21 O -0.540 6.540 22 C -0.223 4.223 23 C 0.085 3.915 24 N -0.518 5.518 25 H 0.428 0.572 26 C 0.044 3.956 27 C 0.278 3.722 28 N -0.402 5.402 29 C -0.047 4.047 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.348 0.652 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.398 0.602 43 H 0.188 0.812 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 3.643 26.686 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.001 3.999 19 N -0.376 5.376 20 C 0.374 3.626 21 O -0.417 6.417 22 C -0.233 4.233 23 C -0.058 4.058 24 N -0.112 5.112 25 H 0.266 0.734 26 C -0.067 4.067 27 C -0.038 4.038 28 N -0.078 5.078 29 C -0.075 4.075 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.167 0.833 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.233 0.767 43 H 0.205 0.795 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.099 3.393 28.471 28.840 hybrid contribution 0.573 0.875 -1.278 1.651 sum -2.525 4.268 27.194 27.642 Atomic orbital electron populations 1.21762 0.93756 1.02253 1.01981 1.21343 0.97578 0.99953 0.93012 0.90520 1.21902 0.97407 0.98002 0.89200 1.60037 1.64169 1.05814 0.99801 1.21667 0.97773 0.98661 0.90100 1.19815 0.85545 0.87924 0.84093 1.90513 1.44173 1.26436 1.85754 1.41866 1.49476 1.24226 1.04448 1.19701 1.32926 1.06707 0.83635 0.87933 1.25258 0.96913 0.96619 0.99099 1.69614 1.38889 1.21705 1.24072 0.85863 0.79145 0.79047 0.80265 1.20442 1.20919 1.19408 1.21403 1.00166 0.95469 0.82830 1.45808 1.58193 1.27909 1.05667 1.17304 0.78909 0.84260 0.82091 1.90812 1.40213 1.24142 1.86561 1.19649 1.10692 0.98878 0.94076 1.22542 0.99975 0.96676 0.86573 1.41582 1.42563 1.21332 1.05756 0.73370 1.15165 1.11675 0.96533 0.83342 1.24271 0.93990 0.94735 0.90807 1.81352 1.08805 1.06432 1.11255 1.21121 0.98311 0.97652 0.90462 0.93751 0.90474 0.92724 0.90699 0.95223 0.83280 0.93861 0.89580 0.77446 0.91867 0.91032 0.91316 0.76744 0.79479 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.95 37.16 0.33 -0.86 16 2 C -0.10 -0.82 2.57 -90.62 -0.23 -1.05 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 C 0.07 0.69 5.07 -3.82 -0.02 0.67 16 5 N -0.67 -9.69 5.58 -115.05 -0.64 -10.33 16 6 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 7 C 0.44 10.10 7.82 -10.99 -0.09 10.02 16 8 O -0.58 -15.39 15.78 5.55 0.09 -15.30 16 9 N -0.56 -14.03 5.29 -10.97 -0.06 -14.08 16 10 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 11 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 14 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 18 C 0.13 1.01 5.06 -4.05 -0.02 0.99 16 19 N -0.72 -4.78 5.27 -61.40 -0.32 -5.10 16 20 C 0.59 5.19 7.81 -12.54 -0.10 5.09 16 21 O -0.54 -7.13 16.92 5.27 0.09 -7.04 16 22 C -0.22 -1.35 6.13 -105.00 -0.64 -2.00 16 23 C 0.08 0.19 11.43 -16.45 -0.19 0.01 16 24 N -0.52 -1.04 6.02 -10.29 -0.06 -1.10 16 25 H 0.43 -0.40 8.96 -40.82 -0.37 -0.76 16 26 C 0.04 0.22 6.90 -83.98 -0.58 -0.36 16 27 C 0.28 1.89 15.88 -22.48 -0.36 1.53 16 28 N -0.40 -3.73 18.54 41.83 0.78 -2.95 16 29 C -0.05 -0.30 10.59 -39.05 -0.41 -0.71 16 30 H 0.04 0.28 7.18 -51.93 -0.37 -0.10 16 31 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.35 5.21 8.43 -39.29 -0.33 4.88 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.40 1.46 6.56 -40.82 -0.27 1.20 16 43 H 0.19 -0.25 7.44 -52.49 -0.39 -0.64 16 44 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -35.99 389.77 -6.90 -42.90 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.77 Total: 8.71 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -2.58 Total: 6.24 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.41 Total: -57.12 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.18 Total: -22.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.99 -6.90 -42.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270386274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.183 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds