Wall clock time and date at job start Tue Mar 31 2020 18:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47369 * 2 1 4 4 C 1.53006 * 109.46825 * 240.00486 * 2 1 3 5 5 N 1.46898 * 109.47138 * 65.00038 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46922 * 90.00327 * 14 12 10 16 16 H 1.48500 * 109.47032 * 210.00074 * 14 12 10 17 17 H 1.48489 * 109.47076 * 330.00276 * 14 12 10 18 18 C 1.52994 * 109.46945 * 120.00372 * 2 1 3 19 19 N 1.46496 * 109.47355 * 294.99481 * 18 2 1 20 20 C 1.34773 * 119.99934 * 180.02562 * 19 18 2 21 21 O 1.21614 * 120.00264 * 359.97438 * 20 19 18 22 22 C 1.47380 * 119.99920 * 180.02562 * 20 19 18 23 23 C 1.38130 * 126.46725 * 0.02601 * 22 20 19 24 24 N 1.34430 * 108.38727 * 179.97438 * 23 22 20 25 25 H 0.97001 * 125.38949 * 179.97438 * 24 23 22 26 26 C 1.37705 * 109.22150 * 359.97438 * 24 23 22 27 27 C 1.43198 * 125.84376 * 180.02562 * 26 24 23 28 28 N 9.61765 * 89.49154 * 83.60271 * 2 1 3 29 29 C 1.36354 * 108.31439 * 359.72907 * 26 24 23 30 30 H 1.09000 * 109.46878 * 300.00031 * 1 2 3 31 31 H 1.08999 * 109.47096 * 59.99651 * 1 2 3 32 32 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46770 * 304.99985 * 4 2 1 34 34 H 1.08995 * 109.47019 * 185.00198 * 4 2 1 35 35 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 36 36 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 37 37 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 38 38 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 39 39 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 40 40 H 1.08997 * 109.47133 * 55.00232 * 18 2 1 41 41 H 1.09003 * 109.46947 * 174.99410 * 18 2 1 42 42 H 0.97001 * 119.99813 * 0.02562 * 19 18 2 43 43 H 1.08000 * 125.80605 * 0.03126 * 23 22 20 44 44 H 1.07999 * 126.49985 * 180.26927 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6513 0.0376 -2.4457 6 6 2.1246 -0.6269 -3.6674 7 6 1.7076 0.1783 -4.8710 8 8 1.0785 1.2050 -4.7253 9 7 2.0338 -0.2425 -6.1091 10 6 1.6548 0.4904 -7.2041 11 1 1.0946 1.4045 -7.0745 12 6 1.9915 0.0569 -8.4806 13 7 2.6736 -1.0552 -8.6383 14 14 1.4746 1.0551 -9.9726 15 1 2.5340 2.0434 -10.2982 16 1 1.2724 0.1468 -11.1299 17 1 0.2065 1.7684 -9.6757 18 6 2.0400 -0.7213 1.2492 19 7 1.6525 0.0352 2.4423 20 6 1.9965 -0.4133 3.6658 21 8 2.6282 -1.4463 3.7793 22 6 1.6063 0.3475 4.8662 23 6 0.8912 1.5290 4.8928 24 7 0.7392 1.9038 6.1749 25 1 0.2743 2.7002 6.4760 26 6 1.3479 0.9784 6.9930 27 6 1.4003 1.0294 8.4231 28 7 1.4447 1.0716 9.5574 29 6 1.8866 0.0017 6.2086 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6053 -1.7197 -1.2953 34 1 3.1262 -0.7995 -1.2057 35 1 1.9881 0.9875 -2.3967 36 1 3.2116 -0.7049 -3.6407 37 1 1.6902 -1.6247 -3.7298 38 1 2.5372 -1.0633 -6.2255 39 1 2.9083 -1.3580 -9.5294 40 1 1.6054 -1.7198 1.2950 41 1 3.1263 -0.7996 1.2054 42 1 1.1484 0.8590 2.3518 43 1 0.5170 2.0607 4.0305 44 1 2.4276 -0.8692 6.5479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270386274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:03 Heat of formation + Delta-G solvation = -32.542410 kcal Electronic energy + Delta-G solvation = -26016.642156 eV Core-core repulsion = 21968.381507 eV Total energy + Delta-G solvation = -4048.260649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46630 -40.30312 -40.06107 -38.12449 -37.60971 -36.11952 -35.56688 -33.47630 -33.14713 -32.33809 -30.80651 -28.76090 -27.55431 -26.52535 -24.74168 -23.56533 -23.25763 -21.55737 -21.02030 -21.00524 -20.30735 -19.82692 -17.79501 -17.38405 -17.21247 -16.90178 -16.62036 -16.40972 -16.33867 -15.92848 -15.84349 -15.26076 -15.22640 -15.15062 -15.07743 -14.49215 -14.33680 -14.14066 -14.02384 -13.83974 -13.68736 -13.47332 -13.36022 -13.22625 -13.10697 -12.92258 -12.79962 -12.38740 -12.10391 -11.90453 -11.84230 -11.60439 -11.47087 -11.00598 -10.29613 -10.25656 -9.98153 -9.92549 -9.37385 -9.23034 -8.43808 -5.92425 0.36771 0.81526 1.23061 1.40431 1.44274 1.56911 2.09417 2.11650 2.27094 2.28894 2.33818 2.62584 2.99651 3.09283 3.24030 3.59949 3.86345 3.98267 4.05299 4.14106 4.19612 4.26570 4.38098 4.53578 4.61304 4.63421 4.67639 4.74004 4.89639 4.93441 4.97264 5.08897 5.20521 5.39243 5.40910 5.43895 5.57370 5.57670 5.66346 5.93357 6.15089 6.25257 6.40995 6.50168 6.63418 6.74823 7.15790 7.42436 7.60248 8.15151 8.73604 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.043538 B = 0.001390 C = 0.001359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.969221 B =20136.382016 C =20599.617111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.088 0.912 4 C 0.064 3.936 5 N -0.675 5.675 6 C 0.064 3.936 7 C 0.439 3.561 8 O -0.621 6.621 9 N -0.575 5.575 10 C -0.334 4.334 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.992 3.008 15 H -0.271 1.271 16 H -0.272 1.272 17 H -0.272 1.272 18 C 0.132 3.868 19 N -0.709 5.709 20 C 0.586 3.414 21 O -0.595 6.595 22 C -0.257 4.257 23 C 0.130 3.870 24 N -0.500 5.500 25 H 0.446 0.554 26 C 0.037 3.963 27 C 0.302 3.698 28 N -0.451 5.451 29 C -0.059 4.059 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.345 0.655 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.415 0.585 43 H 0.235 0.765 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 5.012 26.634 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.106 0.894 4 C -0.065 4.065 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.508 6.508 9 N -0.212 5.212 10 C -0.463 4.463 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.196 1.196 16 H -0.197 1.197 17 H -0.197 1.197 18 C 0.008 3.992 19 N -0.361 5.361 20 C 0.375 3.625 21 O -0.477 6.477 22 C -0.266 4.266 23 C -0.015 4.015 24 N -0.095 5.095 25 H 0.288 0.712 26 C -0.074 4.074 27 C -0.013 4.013 28 N -0.129 5.129 29 C -0.088 4.088 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.164 0.836 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.253 0.747 43 H 0.251 0.749 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.825 4.792 28.450 29.103 hybrid contribution 0.773 0.458 -1.250 1.539 sum -3.052 5.250 27.200 27.870 Atomic orbital electron populations 1.21721 0.93742 1.01862 1.02112 1.21197 0.97346 1.00184 0.91763 0.89351 1.21995 0.98160 0.97854 0.88528 1.60033 1.64620 1.05945 1.00177 1.21523 0.99036 0.98027 0.88232 1.20898 0.83813 0.87617 0.85056 1.90481 1.45502 1.28284 1.86503 1.41947 1.50099 1.24351 1.04801 1.19680 1.34364 1.06962 0.85318 0.90207 1.26024 0.96476 0.97532 1.01197 1.69677 1.39085 1.22500 1.24988 0.84939 0.78651 0.77844 0.76988 1.19641 1.19718 1.19687 1.21210 0.99593 0.95206 0.83204 1.45618 1.57708 1.28199 1.04619 1.17675 0.77978 0.83681 0.83123 1.90784 1.42885 1.26661 1.87323 1.19455 1.13635 1.00876 0.92658 1.23134 0.96309 0.94505 0.87523 1.41593 1.41467 1.21167 1.05272 0.71185 1.14888 1.12769 0.97315 0.82460 1.24423 0.92578 0.93277 0.90985 1.81370 1.10682 1.08158 1.12662 1.21143 0.98542 0.97797 0.91311 0.90920 0.92995 0.93412 0.90596 0.94240 0.83618 0.91738 0.88069 0.77038 0.91370 0.92075 0.92127 0.74699 0.74856 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.95 71.98 0.64 -1.39 16 2 C -0.09 -1.21 2.57 -10.79 -0.03 -1.24 16 3 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 4 C 0.06 1.24 5.07 86.31 0.44 1.68 16 5 N -0.68 -18.73 5.58 -517.92 -2.89 -21.62 16 6 C 0.06 2.07 6.17 85.56 0.53 2.60 16 7 C 0.44 20.15 7.82 87.66 0.69 20.84 16 8 O -0.62 -33.14 15.78 -3.06 -0.05 -33.18 16 9 N -0.57 -28.91 5.29 -306.99 -1.62 -30.53 16 10 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 11 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 14 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 C 0.13 1.91 5.06 86.38 0.44 2.35 16 19 N -0.71 -7.63 5.27 -466.43 -2.46 -10.09 16 20 C 0.59 9.68 7.81 86.65 0.68 10.36 16 21 O -0.59 -16.03 16.92 -4.08 -0.07 -16.10 16 22 C -0.26 -2.62 6.13 -20.11 -0.12 -2.74 16 23 C 0.13 0.04 11.43 84.27 0.96 1.01 16 24 N -0.50 -0.27 6.02 -186.47 -1.12 -1.39 16 25 H 0.45 -2.64 8.96 -92.71 -0.83 -3.47 16 26 C 0.04 0.31 6.90 39.03 0.27 0.58 16 27 C 0.30 3.97 15.88 88.33 1.40 5.37 16 28 N -0.45 -8.48 18.54 19.00 0.35 -8.13 16 29 C -0.06 -0.72 10.59 22.62 0.24 -0.48 16 30 H 0.07 0.64 7.18 -2.39 -0.02 0.62 16 31 H 0.05 1.07 7.75 -2.39 -0.02 1.05 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.35 9.92 8.43 -89.69 -0.76 9.16 16 36 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.40 18.98 7.90 -92.71 -0.73 18.24 16 39 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.42 1.35 6.56 -92.71 -0.61 0.74 16 43 H 0.24 -2.17 7.44 -2.91 -0.02 -2.19 16 44 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -81.76 389.77 0.03 -81.73 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -1.83 Total: 23.13 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 7.41 Total: 20.88 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -7.46 Total: -120.75 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.12 Total: -49.28 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -81.76 0.03 -81.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270386274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.186 kcal (2) G-P(sol) polarization free energy of solvation -81.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds