Wall clock time and date at job start Tue Mar 31 2020 18:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47554 * 2 1 4 4 C 1.53003 * 109.47444 * 239.99818 * 2 1 3 5 5 N 1.46501 * 109.47262 * 184.99880 * 4 2 1 6 6 C 1.46497 * 120.00204 * 270.00031 * 5 4 2 7 7 C 1.34776 * 119.99643 * 89.99968 * 5 4 2 8 8 O 1.21280 * 120.00673 * 0.02562 * 7 5 4 9 9 C 1.50704 * 119.99667 * 179.97438 * 7 5 4 10 10 C 1.50700 * 109.47185 * 179.97438 * 9 7 5 11 11 C 1.34240 * 126.49629 * 265.03380 * 10 9 7 12 12 N 1.36821 * 109.93121 * 179.97438 * 11 10 9 13 13 H 0.97001 * 125.06715 * 179.97438 * 12 11 10 14 14 C 1.37820 * 109.85832 * 0.26532 * 12 11 10 15 15 C 1.39092 * 133.39043 * 179.73333 * 14 12 11 16 16 C 1.37720 * 119.95277 * 179.97438 * 15 14 12 17 17 C 1.39028 * 120.64444 * 0.02562 * 16 15 14 18 18 F 1.35101 * 119.83003 * 179.97438 * 17 16 15 19 19 C 1.37799 * 120.33635 * 359.53762 * 17 16 15 20 20 C 1.39679 * 119.62589 * 0.69494 * 19 17 16 21 21 N 1.46501 * 109.47409 * 119.99948 * 2 1 3 22 22 C 1.36942 * 119.99941 * 275.00165 * 21 2 1 23 23 H 1.07995 * 119.99839 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99962 * 179.97438 * 22 21 2 25 25 N 1.31617 * 119.99926 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99799 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46853 * 90.00390 * 26 24 22 28 28 H 1.48498 * 109.47173 * 210.00040 * 26 24 22 29 29 H 1.48496 * 109.46981 * 330.00462 * 26 24 22 30 30 H 1.08995 * 109.47372 * 60.00624 * 1 2 3 31 31 H 1.09008 * 109.47157 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47364 * 299.99794 * 1 2 3 33 33 H 1.08998 * 109.46608 * 64.99565 * 4 2 1 34 34 H 1.08999 * 109.46837 * 305.00275 * 4 2 1 35 35 H 1.09003 * 109.46649 * 270.00556 * 6 5 4 36 36 H 1.09005 * 109.46852 * 29.99944 * 6 5 4 37 37 H 1.08993 * 109.47421 * 150.00009 * 6 5 4 38 38 H 1.09001 * 109.46444 * 60.00507 * 9 7 5 39 39 H 1.08992 * 109.47483 * 300.00290 * 9 7 5 40 40 H 1.07994 * 125.03736 * 359.95195 * 11 10 9 41 41 H 1.08001 * 120.02885 * 359.97438 * 15 14 12 42 42 H 1.07999 * 119.67434 * 179.97438 * 16 15 14 43 43 H 1.08004 * 120.18394 * 179.97438 * 19 17 16 44 44 H 0.97004 * 120.00492 * 94.99902 * 21 2 1 45 45 H 0.96999 * 119.99847 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2340 -1.7612 7 6 4.0757 -1.8986 -0.6114 8 8 3.3851 -2.7768 -0.1394 9 6 5.5777 -2.0070 -0.5516 10 6 5.9616 -3.2891 0.1412 11 6 6.2545 -3.4364 1.4430 12 7 6.5557 -4.7445 1.7081 13 1 6.7996 -5.0947 2.5792 14 6 6.4672 -5.4890 0.5517 15 6 6.6703 -6.8345 0.2636 16 6 6.5000 -7.2956 -1.0229 17 6 6.1260 -6.4281 -2.0429 18 9 5.9640 -6.8980 -3.2992 19 6 5.9109 -5.0931 -1.7773 20 6 6.0849 -4.6108 -0.4780 21 7 2.0183 -0.6906 1.1962 22 6 2.1491 -0.0074 2.3758 23 1 1.8918 1.0403 2.4243 24 6 2.6114 -0.6619 3.5093 25 7 2.9245 -1.9389 3.4502 26 14 2.7905 0.2702 5.1182 27 1 1.5227 0.1800 5.8863 28 1 3.8946 -0.3235 5.9141 29 1 3.0962 1.6952 4.8333 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7516 -0.1584 -2.1369 34 1 1.6054 -1.7198 -1.2951 35 1 4.5424 0.0092 -2.8073 36 1 3.8090 1.1866 -1.6918 37 1 5.2722 0.2953 -1.2092 38 1 5.9811 -1.1598 0.0031 39 1 5.9828 -2.0050 -1.5634 40 1 6.2530 -2.6404 2.1728 41 1 6.9615 -7.5172 1.0481 42 1 6.6594 -8.3411 -1.2416 43 1 5.6208 -4.4213 -2.5717 44 1 2.2491 -1.6318 1.1527 45 1 3.2471 -2.3963 4.2424 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331564412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:47 Heat of formation + Delta-G solvation = -4.445107 kcal Electronic energy + Delta-G solvation = -29238.375790 eV Core-core repulsion = 25171.413570 eV Total energy + Delta-G solvation = -4066.962220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.62475 -41.08187 -39.19087 -36.46557 -35.83855 -34.24297 -32.82880 -31.87142 -30.16921 -28.73683 -28.61928 -27.36205 -26.68155 -24.78518 -23.49874 -22.91935 -21.76250 -20.33561 -19.45354 -18.51296 -17.70935 -17.23134 -17.03245 -16.31051 -16.08080 -15.47574 -15.36409 -15.29021 -14.93278 -14.53409 -14.01828 -13.84777 -13.69556 -13.39506 -13.10286 -12.86281 -12.77707 -12.66153 -12.38470 -12.24334 -12.16449 -12.04937 -11.82612 -11.47194 -11.25917 -11.13067 -11.11156 -10.81986 -10.66442 -10.59534 -10.30010 -10.00422 -9.58457 -9.49501 -8.99700 -8.80765 -7.95523 -7.93251 -7.44097 -6.77957 -5.60227 -2.89405 1.15000 1.57013 2.85956 3.33012 3.42259 3.43860 3.50142 3.50570 3.68354 3.91324 4.44476 4.65886 4.73830 4.95564 5.14225 5.19959 5.25041 5.39886 5.41983 5.53452 5.58962 5.65152 5.66817 5.80004 5.81314 5.86074 5.92797 5.94761 5.98468 6.09606 6.16691 6.18722 6.30551 6.34563 6.46896 6.49281 6.73987 6.83535 6.88353 6.95867 7.05491 7.24067 7.27414 7.72102 7.78119 8.02885 8.55462 8.99354 9.68270 10.33669 10.73736 11.59021 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.011769 B = 0.004123 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.642445 B = 6790.006829 C = 8288.433141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.042 0.958 4 C 0.111 3.889 5 N -0.614 5.614 6 C 0.085 3.915 7 C 0.520 3.480 8 O -0.505 6.505 9 C -0.058 4.058 10 C -0.155 4.155 11 C 0.101 3.899 12 N -0.590 5.590 13 H 0.417 0.583 14 C 0.086 3.914 15 C -0.100 4.100 16 C -0.141 4.141 17 C 0.062 3.938 18 F -0.148 7.148 19 C -0.103 4.103 20 C -0.059 4.059 21 N -0.720 5.720 22 C -0.234 4.234 23 H 0.063 0.937 24 C -0.013 4.013 25 N -0.918 5.918 26 Si 0.895 3.105 27 H -0.293 1.293 28 H -0.294 1.294 29 H -0.285 1.285 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.175 0.825 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.400 0.600 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 -3.199 -10.934 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.059 0.941 4 C -0.012 4.012 5 N -0.349 5.349 6 C -0.059 4.059 7 C 0.307 3.693 8 O -0.378 6.378 9 C -0.098 4.098 10 C -0.162 4.162 11 C -0.026 4.026 12 N -0.191 5.191 13 H 0.253 0.747 14 C -0.021 4.021 15 C -0.120 4.120 16 C -0.160 4.160 17 C 0.042 3.958 18 F -0.127 7.127 19 C -0.122 4.122 20 C -0.064 4.064 21 N -0.367 5.367 22 C -0.366 4.366 23 H 0.081 0.919 24 C -0.209 4.209 25 N -0.566 5.566 26 Si 0.727 3.273 27 H -0.220 1.220 28 H -0.221 1.221 29 H -0.211 1.211 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.192 0.808 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.239 0.761 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.870 -3.631 -10.455 14.830 hybrid contribution -0.008 0.225 1.342 1.361 sum 9.862 -3.406 -9.113 13.853 Atomic orbital electron populations 1.22416 0.99327 1.00923 0.99812 1.20635 0.91842 0.95484 0.87747 0.94052 1.21774 0.79683 1.01881 0.97887 1.47607 1.06439 1.21215 1.59612 1.21661 0.95695 0.91180 0.97386 1.20357 0.90109 0.81442 0.77352 1.90704 1.64261 1.39370 1.43433 1.19890 0.93397 0.95443 1.01110 1.19428 1.11087 0.92577 0.93119 1.21740 0.98817 0.85494 0.96563 1.41708 1.60972 1.07382 1.09085 0.74659 1.18216 1.04191 0.92961 0.86772 1.19760 1.03949 0.91854 0.96457 1.20611 1.04115 0.99584 0.91733 1.17234 1.06541 0.92499 0.79551 1.91448 1.93840 1.89044 1.38367 1.20319 1.01858 0.93672 0.96368 1.18703 1.02468 0.93291 0.91969 1.42744 1.77520 1.11861 1.04533 1.19213 1.36003 0.93577 0.87776 0.91883 1.24689 1.02905 0.95874 0.97417 1.69786 1.50878 1.08160 1.27764 0.86372 0.77193 0.78805 0.84910 1.22034 1.22099 1.21064 0.94668 0.93428 0.92783 0.91416 0.90476 0.93490 0.91485 0.91395 0.88449 0.89325 0.80774 0.85559 0.84948 0.85334 0.76130 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.49 37.15 0.35 -2.72 16 2 C 0.15 3.14 3.20 -67.93 -0.22 2.93 16 3 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 4 C 0.11 1.92 5.14 -4.04 -0.02 1.90 16 5 N -0.61 -10.19 2.77 -181.57 -0.50 -10.69 16 6 C 0.08 1.00 10.24 59.85 0.61 1.61 16 7 C 0.52 9.89 6.96 -10.98 -0.08 9.82 16 8 O -0.50 -12.05 13.35 5.56 0.07 -11.97 16 9 C -0.06 -0.88 4.78 -29.03 -0.14 -1.02 16 10 C -0.16 -2.58 4.81 -102.71 -0.49 -3.07 16 11 C 0.10 1.62 11.73 -16.73 -0.20 1.42 16 12 N -0.59 -8.26 6.08 -10.64 -0.06 -8.32 16 13 H 0.42 4.52 8.96 -40.82 -0.37 4.15 16 14 C 0.09 1.28 7.27 -83.95 -0.61 0.67 16 15 C -0.10 -1.26 10.06 -39.45 -0.40 -1.65 16 16 C -0.14 -1.78 9.99 -39.48 -0.39 -2.18 16 17 C 0.06 0.90 7.29 -39.45 -0.29 0.61 16 18 F -0.15 -2.14 17.26 2.25 0.04 -2.10 16 19 C -0.10 -1.57 10.08 -39.20 -0.39 -1.97 16 20 C -0.06 -0.97 6.35 -105.14 -0.67 -1.63 16 21 N -0.72 -18.59 4.52 -53.43 -0.24 -18.84 16 22 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16 23 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.92 -27.61 13.06 55.49 0.72 -26.89 16 26 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.92 8.07 -51.93 -0.42 0.51 16 34 H 0.08 1.49 7.42 -51.93 -0.39 1.10 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.07 0.74 6.44 -51.93 -0.33 0.40 16 38 H 0.10 1.35 7.40 -51.93 -0.38 0.97 16 39 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 40 H 0.18 2.73 8.06 -52.49 -0.42 2.31 16 41 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 44 H 0.40 11.30 5.02 -40.82 -0.20 11.09 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -35.39 379.25 -8.74 -44.13 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -6.28 Total: 14.15 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -3.18 Total: -2.43 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.09 Total: -64.74 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.39 -8.74 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331564412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.684 kcal (2) G-P(sol) polarization free energy of solvation -35.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds