Wall clock time and date at job start Tue Mar 31 2020 18:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47554 * 2 1 4 4 C 1.53003 * 109.47444 * 239.99818 * 2 1 3 5 5 N 1.46501 * 109.47262 * 184.99880 * 4 2 1 6 6 C 1.46497 * 120.00204 * 270.00031 * 5 4 2 7 7 C 1.34776 * 119.99643 * 89.99968 * 5 4 2 8 8 O 1.21280 * 120.00673 * 0.02562 * 7 5 4 9 9 C 1.50704 * 119.99667 * 179.97438 * 7 5 4 10 10 C 1.50700 * 109.47185 * 179.97438 * 9 7 5 11 11 C 1.34240 * 126.49629 * 265.03380 * 10 9 7 12 12 N 1.36821 * 109.93121 * 179.97438 * 11 10 9 13 13 H 0.97001 * 125.06715 * 179.97438 * 12 11 10 14 14 C 1.37820 * 109.85832 * 0.26532 * 12 11 10 15 15 C 1.39092 * 133.39043 * 179.73333 * 14 12 11 16 16 C 1.37720 * 119.95277 * 179.97438 * 15 14 12 17 17 C 1.39028 * 120.64444 * 0.02562 * 16 15 14 18 18 F 1.35101 * 119.83003 * 179.97438 * 17 16 15 19 19 C 1.37799 * 120.33635 * 359.53762 * 17 16 15 20 20 C 1.39679 * 119.62589 * 0.69494 * 19 17 16 21 21 N 1.46501 * 109.47409 * 119.99948 * 2 1 3 22 22 C 1.36942 * 119.99941 * 275.00165 * 21 2 1 23 23 H 1.07995 * 119.99839 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99962 * 179.97438 * 22 21 2 25 25 N 1.31617 * 119.99926 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99799 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46853 * 90.00390 * 26 24 22 28 28 H 1.48498 * 109.47173 * 210.00040 * 26 24 22 29 29 H 1.48496 * 109.46981 * 330.00462 * 26 24 22 30 30 H 1.08995 * 109.47372 * 60.00624 * 1 2 3 31 31 H 1.09008 * 109.47157 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47364 * 299.99794 * 1 2 3 33 33 H 1.08998 * 109.46608 * 64.99565 * 4 2 1 34 34 H 1.08999 * 109.46837 * 305.00275 * 4 2 1 35 35 H 1.09003 * 109.46649 * 270.00556 * 6 5 4 36 36 H 1.09005 * 109.46852 * 29.99944 * 6 5 4 37 37 H 1.08993 * 109.47421 * 150.00009 * 6 5 4 38 38 H 1.09001 * 109.46444 * 60.00507 * 9 7 5 39 39 H 1.08992 * 109.47483 * 300.00290 * 9 7 5 40 40 H 1.07994 * 125.03736 * 359.95195 * 11 10 9 41 41 H 1.08001 * 120.02885 * 359.97438 * 15 14 12 42 42 H 1.07999 * 119.67434 * 179.97438 * 16 15 14 43 43 H 1.08004 * 120.18394 * 179.97438 * 19 17 16 44 44 H 0.97004 * 120.00492 * 94.99902 * 21 2 1 45 45 H 0.96999 * 119.99847 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2340 -1.7612 7 6 4.0757 -1.8986 -0.6114 8 8 3.3851 -2.7768 -0.1394 9 6 5.5777 -2.0070 -0.5516 10 6 5.9616 -3.2891 0.1412 11 6 6.2545 -3.4364 1.4430 12 7 6.5557 -4.7445 1.7081 13 1 6.7996 -5.0947 2.5792 14 6 6.4672 -5.4890 0.5517 15 6 6.6703 -6.8345 0.2636 16 6 6.5000 -7.2956 -1.0229 17 6 6.1260 -6.4281 -2.0429 18 9 5.9640 -6.8980 -3.2992 19 6 5.9109 -5.0931 -1.7773 20 6 6.0849 -4.6108 -0.4780 21 7 2.0183 -0.6906 1.1962 22 6 2.1491 -0.0074 2.3758 23 1 1.8918 1.0403 2.4243 24 6 2.6114 -0.6619 3.5093 25 7 2.9245 -1.9389 3.4502 26 14 2.7905 0.2702 5.1182 27 1 1.5227 0.1800 5.8863 28 1 3.8946 -0.3235 5.9141 29 1 3.0962 1.6952 4.8333 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7516 -0.1584 -2.1369 34 1 1.6054 -1.7198 -1.2951 35 1 4.5424 0.0092 -2.8073 36 1 3.8090 1.1866 -1.6918 37 1 5.2722 0.2953 -1.2092 38 1 5.9811 -1.1598 0.0031 39 1 5.9828 -2.0050 -1.5634 40 1 6.2530 -2.6404 2.1728 41 1 6.9615 -7.5172 1.0481 42 1 6.6594 -8.3411 -1.2416 43 1 5.6208 -4.4213 -2.5717 44 1 2.2491 -1.6318 1.1527 45 1 3.2471 -2.3963 4.2424 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331564412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:46 Heat of formation + Delta-G solvation = -26.368495 kcal Electronic energy + Delta-G solvation = -29239.326460 eV Core-core repulsion = 25171.413570 eV Total energy + Delta-G solvation = -4067.912890 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.74629 -42.20806 -40.58642 -37.62145 -37.38473 -35.81498 -34.15936 -33.64519 -31.34394 -30.47840 -29.83634 -28.65019 -27.81197 -26.15656 -25.49855 -24.01109 -22.86750 -21.83665 -20.82579 -19.78857 -19.18056 -18.84581 -18.17545 -17.72155 -17.19357 -16.93831 -16.62449 -16.49505 -16.36237 -16.04563 -15.53849 -15.18158 -15.03784 -14.76910 -14.38852 -14.24015 -13.97710 -13.84109 -13.75338 -13.59776 -13.45270 -13.36575 -13.15141 -12.95880 -12.81829 -12.67657 -12.56331 -12.32858 -12.20886 -12.11033 -11.78500 -11.72402 -11.51661 -10.90199 -10.75552 -10.38846 -9.30952 -9.07085 -8.82790 -8.57742 -7.76502 -5.06019 0.05643 0.46562 1.45198 1.47922 1.54805 1.65316 2.03480 2.25298 2.46287 2.61359 2.78820 3.34793 3.50512 3.69932 3.86745 3.94157 4.06499 4.12013 4.21236 4.24718 4.34995 4.44453 4.49006 4.58782 4.65314 4.68308 4.72727 4.75085 4.82841 4.86696 4.88371 4.99139 5.06464 5.11154 5.12171 5.24380 5.30737 5.36349 5.52031 5.58949 5.72829 5.80133 5.88849 6.14384 6.40393 6.68898 6.73392 7.47000 7.62610 8.33974 8.59688 9.43302 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.011769 B = 0.004123 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.642445 B = 6790.006829 C = 8288.433141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 H 0.047 0.953 4 C 0.117 3.883 5 N -0.615 5.615 6 C 0.076 3.924 7 C 0.510 3.490 8 O -0.564 6.564 9 C -0.051 4.051 10 C -0.172 4.172 11 C 0.083 3.917 12 N -0.581 5.581 13 H 0.429 0.571 14 C 0.072 3.928 15 C -0.094 4.094 16 C -0.136 4.136 17 C 0.052 3.948 18 F -0.150 7.150 19 C -0.118 4.118 20 C -0.086 4.086 21 N -0.735 5.735 22 C -0.236 4.236 23 H 0.067 0.933 24 C -0.070 4.070 25 N -0.951 5.951 26 Si 0.960 3.040 27 H -0.298 1.298 28 H -0.296 1.296 29 H -0.271 1.271 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.114 0.886 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.131 0.869 44 H 0.386 0.614 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.982 -2.442 -12.027 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.065 0.935 4 C -0.007 4.007 5 N -0.348 5.348 6 C -0.066 4.066 7 C 0.299 3.701 8 O -0.441 6.441 9 C -0.091 4.091 10 C -0.179 4.179 11 C -0.045 4.045 12 N -0.184 5.184 13 H 0.268 0.732 14 C -0.036 4.036 15 C -0.114 4.114 16 C -0.156 4.156 17 C 0.032 3.968 18 F -0.129 7.129 19 C -0.138 4.138 20 C -0.091 4.091 21 N -0.380 5.380 22 C -0.368 4.368 23 H 0.084 0.916 24 C -0.263 4.263 25 N -0.601 5.601 26 Si 0.790 3.210 27 H -0.226 1.226 28 H -0.222 1.222 29 H -0.196 1.196 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.132 0.868 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.187 0.813 41 H 0.178 0.822 42 H 0.181 0.819 43 H 0.149 0.851 44 H 0.223 0.777 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.676 -2.801 -11.592 16.006 hybrid contribution -0.308 0.013 1.580 1.610 sum 10.369 -2.787 -10.012 14.681 Atomic orbital electron populations 1.22271 0.98006 1.00253 1.00999 1.20938 0.92716 0.95526 0.87203 0.93472 1.21697 0.80309 1.00669 0.98035 1.47766 1.06605 1.21621 1.58790 1.21985 0.95437 0.90119 0.99030 1.21042 0.91412 0.81221 0.76442 1.90669 1.65709 1.41650 1.46122 1.19925 0.90929 0.95358 1.02918 1.19714 1.11207 0.93439 0.93558 1.21779 0.99751 0.86354 0.96580 1.41652 1.60445 1.06687 1.09652 0.73171 1.18585 1.04433 0.93932 0.86645 1.20163 1.02607 0.91275 0.97386 1.20984 1.02668 1.00807 0.91114 1.17452 1.06780 0.92607 0.79964 1.91439 1.93888 1.88979 1.38571 1.20426 1.02598 0.94423 0.96310 1.18918 1.03720 0.93651 0.92832 1.42970 1.77900 1.11491 1.05659 1.19555 1.34690 0.93767 0.88827 0.91552 1.25400 1.03628 0.96708 1.00524 1.69975 1.52349 1.09690 1.28129 0.85346 0.76501 0.78200 0.80907 1.22590 1.22241 1.19636 0.90286 0.95015 0.94687 0.86822 0.93118 0.90328 0.90389 0.90488 0.87410 0.86312 0.81295 0.82155 0.81866 0.85084 0.77689 0.94831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 9.49 71.98 0.68 -4.96 16 2 C 0.15 5.82 3.20 44.99 0.14 5.97 16 3 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 4 C 0.12 3.89 5.14 86.38 0.44 4.34 16 5 N -0.61 -19.69 2.77 -846.75 -2.35 -22.04 16 6 C 0.08 1.59 10.24 127.77 1.31 2.89 16 7 C 0.51 19.61 6.96 87.66 0.61 20.22 16 8 O -0.56 -28.09 13.35 -3.03 -0.04 -28.13 16 9 C -0.05 -1.55 4.78 29.10 0.14 -1.41 16 10 C -0.17 -5.86 4.81 -18.63 -0.09 -5.95 16 11 C 0.08 2.77 11.73 83.00 0.97 3.75 16 12 N -0.58 -16.52 6.08 -187.58 -1.14 -17.66 16 13 H 0.43 9.34 8.96 -92.71 -0.83 8.51 16 14 C 0.07 2.13 7.27 38.99 0.28 2.41 16 15 C -0.09 -2.21 10.06 22.35 0.22 -1.98 16 16 C -0.14 -3.19 9.99 22.34 0.22 -2.97 16 17 C 0.05 1.47 7.29 22.36 0.16 1.64 16 18 F -0.15 -4.21 17.26 44.97 0.78 -3.44 16 19 C -0.12 -3.65 10.08 22.51 0.23 -3.42 16 20 C -0.09 -2.86 6.35 -20.20 -0.13 -2.98 16 21 N -0.74 -38.54 4.52 -322.95 -1.46 -40.00 16 22 C -0.24 -13.32 9.93 84.03 0.83 -12.49 16 23 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 24 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 25 N -0.95 -58.94 13.06 21.65 0.28 -58.66 16 26 Si 0.96 46.44 29.55 68.60 2.03 48.47 16 27 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.11 2.71 8.07 -2.39 -0.02 2.69 16 34 H 0.05 1.97 7.42 -2.39 -0.02 1.96 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.47 8.07 -2.38 -0.02 1.45 16 37 H 0.08 1.47 6.44 -2.39 -0.02 1.46 16 38 H 0.11 2.96 7.40 -2.39 -0.02 2.95 16 39 H 0.12 2.76 8.11 -2.39 -0.02 2.74 16 40 H 0.17 5.64 8.06 -2.91 -0.02 5.62 16 41 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 42 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 43 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 44 H 0.39 22.59 5.02 -92.71 -0.47 22.13 16 45 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -79.68 379.25 4.33 -75.35 By element: Atomic # 1 Polarization: 44.92 SS G_CDS: -0.27 Total: 44.65 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 6.51 Total: 1.46 kcal Atomic # 7 Polarization: -133.69 SS G_CDS: -4.67 Total: -138.36 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.04 Total: -28.13 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -79.68 4.33 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331564412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.981 kcal (2) G-P(sol) polarization free energy of solvation -79.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds