Wall clock time and date at job start Tue Mar 31 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46434 * 2 1 4 4 C 1.52998 * 109.46959 * 240.00628 * 2 1 3 5 5 N 1.46496 * 109.47083 * 184.99946 * 4 2 1 6 6 C 1.46503 * 120.00100 * 269.99885 * 5 4 2 7 7 C 1.36945 * 120.00158 * 89.99521 * 5 4 2 8 8 H 1.07997 * 119.99659 * 22.33800 * 7 5 4 9 9 C 1.38811 * 119.99741 * 202.33447 * 7 5 4 10 10 N 1.31620 * 120.00205 * 11.37344 * 9 7 5 11 11 Si 1.86806 * 119.99688 * 191.36935 * 9 7 5 12 12 H 1.48500 * 109.47110 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46915 * 120.00136 * 11 9 7 14 14 H 1.48502 * 109.47131 * 240.00254 * 11 9 7 15 15 N 1.46496 * 109.47176 * 120.00095 * 2 1 3 16 16 C 1.34770 * 120.00190 * 274.72665 * 15 2 1 17 17 O 1.21279 * 120.00293 * 0.27471 * 16 15 2 18 18 C 1.50706 * 120.00331 * 180.27698 * 16 15 2 19 19 C 1.50693 * 109.47383 * 179.97438 * 18 16 15 20 20 C 1.34246 * 126.49672 * 265.02318 * 19 18 16 21 21 N 1.36809 * 109.93171 * 179.97438 * 20 19 18 22 22 H 0.96998 * 125.06598 * 180.02562 * 21 20 19 23 23 C 1.37806 * 109.86425 * 359.97438 * 21 20 19 24 24 C 1.39098 * 133.39438 * 180.02562 * 23 21 20 25 25 C 1.37725 * 119.95137 * 179.30815 * 24 23 21 26 26 C 1.39037 * 120.64556 * 0.57082 * 25 24 23 27 27 F 1.35103 * 119.83127 * 179.61262 * 26 25 24 28 28 C 1.37788 * 120.33219 * 359.63293 * 26 25 24 29 29 C 1.39671 * 119.63424 * 0.02562 * 28 26 25 30 30 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47461 * 299.99660 * 1 2 3 32 32 H 1.09001 * 109.47708 * 59.99651 * 1 2 3 33 33 H 1.08998 * 109.46748 * 304.99248 * 4 2 1 34 34 H 1.09000 * 109.47234 * 64.99445 * 4 2 1 35 35 H 1.08996 * 109.47206 * 94.21773 * 6 5 4 36 36 H 1.08996 * 109.47065 * 214.22153 * 6 5 4 37 37 H 1.09002 * 109.46502 * 334.21945 * 6 5 4 38 38 H 0.96999 * 119.99768 * 179.97438 * 10 9 7 39 39 H 0.96998 * 119.99617 * 95.00485 * 15 2 1 40 40 H 1.08994 * 109.46618 * 300.00138 * 18 16 15 41 41 H 1.09006 * 109.46678 * 59.99611 * 18 16 15 42 42 H 1.08001 * 125.03284 * 359.93107 * 20 19 18 43 43 H 1.07997 * 120.02666 * 359.95867 * 24 23 21 44 44 H 1.08001 * 119.67624 * 180.20323 * 25 24 23 45 45 H 1.08000 * 120.18464 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.3343 0.2342 -1.7613 7 6 4.0849 -1.9158 -0.6024 8 1 3.5338 -2.8398 -0.5088 9 6 5.3863 -1.8325 -0.1266 10 7 5.9794 -0.6611 -0.0339 11 14 6.2957 -3.3828 0.3823 12 1 5.4148 -4.5615 0.1825 13 1 7.5190 -3.5336 -0.4462 14 1 6.6765 -3.2859 1.8143 15 7 2.0183 -0.6906 1.1961 16 6 2.1523 -0.0170 2.3557 17 8 1.8638 1.1597 2.4103 18 6 2.6606 -0.7259 3.5846 19 6 2.7170 0.2438 4.7367 20 6 3.7876 0.9488 5.1353 21 7 3.4604 1.7240 6.2141 22 1 4.0694 2.3204 6.6770 23 6 2.1364 1.5320 6.5442 24 6 1.3119 2.0589 7.5328 25 6 -0.0085 1.6740 7.6043 26 6 -0.5275 0.7513 6.7030 27 9 -1.8232 0.3794 6.7931 28 6 0.2731 0.2139 5.7187 29 6 1.6123 0.6006 5.6301 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6054 -1.7197 -1.2952 34 1 1.7515 -0.1581 -2.1370 35 1 4.6021 0.9457 -0.9803 36 1 5.2403 -0.2026 -2.1812 37 1 3.7809 0.7485 -2.5471 38 1 6.8887 -0.6029 0.2989 39 1 2.2491 -1.6317 1.1525 40 1 1.9894 -1.5478 3.8335 41 1 3.6590 -1.1181 3.3910 42 1 4.7630 0.9093 4.6732 43 1 1.7041 2.7774 8.2374 44 1 -0.6455 2.0884 8.3717 45 1 -0.1326 -0.5023 5.0196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483390415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:37 Heat of formation + Delta-G solvation = -4.758801 kcal Electronic energy + Delta-G solvation = -28831.566155 eV Core-core repulsion = 24764.590331 eV Total energy + Delta-G solvation = -4066.975823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.71766 -41.24285 -38.90336 -36.62490 -36.22280 -33.91239 -32.91948 -31.36944 -30.47015 -29.63439 -28.89633 -26.81454 -26.14283 -25.59839 -23.08791 -21.99175 -21.90520 -20.74546 -19.63160 -19.15894 -17.95602 -17.20372 -16.85353 -16.25894 -16.18377 -15.47084 -15.40574 -15.20725 -14.87241 -14.44632 -14.20469 -13.94934 -13.74975 -13.28790 -13.23581 -13.04176 -12.91824 -12.75886 -12.60610 -12.34159 -12.11424 -11.83371 -11.46002 -11.34861 -11.27556 -11.19996 -10.88679 -10.75830 -10.70235 -10.37428 -10.21648 -10.03906 -9.84247 -9.70216 -9.02699 -8.60138 -8.13781 -8.11020 -7.59878 -6.79042 -5.76216 -3.22277 0.99935 1.42748 2.69940 3.11814 3.29927 3.39370 3.40013 3.47990 3.71385 4.17439 4.32319 4.43425 4.60079 4.83795 4.99841 5.13645 5.27427 5.34227 5.44490 5.49458 5.59614 5.68714 5.75232 5.80361 5.81178 5.94915 6.00230 6.04283 6.06785 6.18604 6.21024 6.31092 6.35911 6.49376 6.59094 6.70896 6.76018 6.79024 6.94425 7.10795 7.37402 7.42575 7.52537 7.69250 7.78212 8.34074 8.45279 9.11881 9.18524 9.82669 10.33106 11.27722 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.003512 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.535447 B = 7970.844599 C = 9013.828579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.074 0.926 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.253 4.253 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.290 1.290 15 N -0.691 5.691 16 C 0.518 3.482 17 O -0.554 6.554 18 C -0.070 4.070 19 C -0.140 4.140 20 C 0.073 3.927 21 N -0.593 5.593 22 H 0.416 0.584 23 C 0.086 3.914 24 C -0.102 4.102 25 C -0.137 4.137 26 C 0.063 3.937 27 F -0.146 7.146 28 C -0.099 4.099 29 C -0.063 4.063 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.044 0.956 37 H -0.005 1.005 38 H 0.250 0.750 39 H 0.402 0.598 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.175 0.825 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 2.508 12.214 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.092 0.908 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.383 4.383 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.545 5.545 11 Si 0.726 3.274 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.217 1.217 15 N -0.341 5.341 16 C 0.304 3.696 17 O -0.433 6.433 18 C -0.110 4.110 19 C -0.147 4.147 20 C -0.053 4.053 21 N -0.196 5.196 22 H 0.253 0.747 23 C -0.021 4.021 24 C -0.123 4.123 25 C -0.157 4.157 26 C 0.043 3.957 27 F -0.125 7.125 28 C -0.118 4.118 29 C -0.068 4.068 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.014 0.986 38 H 0.061 0.939 39 H 0.238 0.762 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.192 0.808 43 H 0.145 0.855 44 H 0.152 0.848 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.528 3.433 12.295 14.820 hybrid contribution 0.933 -0.913 0.487 1.393 sum -6.595 2.520 12.782 14.602 Atomic orbital electron populations 1.22155 0.97114 1.01128 1.01424 1.21736 0.91623 0.98283 0.87143 0.90782 1.21184 0.85892 0.97862 0.93697 1.43895 0.98939 1.22616 1.66620 1.20787 0.92937 0.90477 0.93827 1.19147 0.97137 0.89442 1.32542 0.91509 1.24982 0.98620 0.96079 0.99573 1.70098 1.13213 1.21484 1.49699 0.86335 0.80120 0.83071 0.77918 1.20309 1.21755 1.21732 1.45706 1.65518 1.14200 1.08654 1.20321 0.77555 0.87253 0.84510 1.90628 1.51200 1.16111 1.85356 1.19970 1.03983 0.96751 0.90317 1.19602 0.91750 1.04163 0.99152 1.21720 1.00225 0.93648 0.89730 1.41671 1.09044 1.39995 1.28863 0.74712 1.18223 0.85173 1.00221 0.98510 1.19757 0.92322 1.01913 0.98267 1.20655 0.95410 0.99329 1.00286 1.17248 0.78898 1.00366 0.99173 1.91461 1.34379 1.90644 1.96022 1.20382 0.92263 1.01220 0.97976 1.18733 0.92921 0.98550 0.96571 0.93096 0.92995 0.92491 0.93398 0.93161 0.95427 0.93745 0.98638 0.93923 0.76229 0.88928 0.87742 0.80816 0.85495 0.84800 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.49 37.16 0.35 -2.12 16 2 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 3 H 0.07 1.62 7.57 -51.93 -0.39 1.23 16 4 C 0.14 2.71 5.36 -4.04 -0.02 2.69 16 5 N -0.60 -13.96 2.82 -181.12 -0.51 -14.47 16 6 C 0.16 3.96 9.01 59.85 0.54 4.50 16 7 C -0.25 -6.23 8.02 -15.06 -0.12 -6.35 16 8 H 0.07 1.59 7.84 -52.49 -0.41 1.18 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -24.55 10.59 55.49 0.59 -23.96 16 11 Si 0.90 20.17 29.57 -169.99 -5.03 15.14 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 15 N -0.69 -12.99 4.49 -53.81 -0.24 -13.23 16 16 C 0.52 10.02 7.79 -10.99 -0.09 9.93 16 17 O -0.55 -12.57 15.69 5.56 0.09 -12.49 16 18 C -0.07 -1.10 6.23 -29.04 -0.18 -1.28 16 19 C -0.14 -2.19 4.81 -102.71 -0.49 -2.68 16 20 C 0.07 1.00 11.73 -16.74 -0.20 0.81 16 21 N -0.59 -6.93 6.07 -10.64 -0.06 -6.99 16 22 H 0.42 3.35 8.96 -40.82 -0.37 2.98 16 23 C 0.09 1.15 7.27 -83.96 -0.61 0.53 16 24 C -0.10 -1.13 10.06 -39.45 -0.40 -1.53 16 25 C -0.14 -1.58 9.99 -39.47 -0.39 -1.97 16 26 C 0.06 0.87 7.29 -39.45 -0.29 0.58 16 27 F -0.15 -2.03 17.26 2.25 0.04 -1.99 16 28 C -0.10 -1.45 10.07 -39.21 -0.40 -1.85 16 29 C -0.06 -0.96 6.35 -105.14 -0.67 -1.63 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 34 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 35 H 0.03 0.73 7.42 -51.93 -0.39 0.35 16 36 H 0.04 1.14 7.19 -51.93 -0.37 0.77 16 37 H 0.00 -0.11 7.84 -51.93 -0.41 -0.51 16 38 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.40 7.34 7.40 -40.82 -0.30 7.04 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -31.75 380.67 -9.04 -40.79 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.40 Total: 9.71 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -3.24 Total: 1.74 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.23 Total: -58.65 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.75 -9.04 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483390415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.031 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds