Wall clock time and date at job start Tue Mar 31 2020 17:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46434 * 2 1 4 4 C 1.52998 * 109.46959 * 240.00628 * 2 1 3 5 5 N 1.46496 * 109.47083 * 184.99946 * 4 2 1 6 6 C 1.46503 * 120.00100 * 269.99885 * 5 4 2 7 7 C 1.36945 * 120.00158 * 89.99521 * 5 4 2 8 8 H 1.07997 * 119.99659 * 22.33800 * 7 5 4 9 9 C 1.38811 * 119.99741 * 202.33447 * 7 5 4 10 10 N 1.31620 * 120.00205 * 11.37344 * 9 7 5 11 11 Si 1.86806 * 119.99688 * 191.36935 * 9 7 5 12 12 H 1.48500 * 109.47110 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46915 * 120.00136 * 11 9 7 14 14 H 1.48502 * 109.47131 * 240.00254 * 11 9 7 15 15 N 1.46496 * 109.47176 * 120.00095 * 2 1 3 16 16 C 1.34770 * 120.00190 * 274.72665 * 15 2 1 17 17 O 1.21279 * 120.00293 * 0.27471 * 16 15 2 18 18 C 1.50706 * 120.00331 * 180.27698 * 16 15 2 19 19 C 1.50693 * 109.47383 * 179.97438 * 18 16 15 20 20 C 1.34246 * 126.49672 * 265.02318 * 19 18 16 21 21 N 1.36809 * 109.93171 * 179.97438 * 20 19 18 22 22 H 0.96998 * 125.06598 * 180.02562 * 21 20 19 23 23 C 1.37806 * 109.86425 * 359.97438 * 21 20 19 24 24 C 1.39098 * 133.39438 * 180.02562 * 23 21 20 25 25 C 1.37725 * 119.95137 * 179.30815 * 24 23 21 26 26 C 1.39037 * 120.64556 * 0.57082 * 25 24 23 27 27 F 1.35103 * 119.83127 * 179.61262 * 26 25 24 28 28 C 1.37788 * 120.33219 * 359.63293 * 26 25 24 29 29 C 1.39671 * 119.63424 * 0.02562 * 28 26 25 30 30 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47461 * 299.99660 * 1 2 3 32 32 H 1.09001 * 109.47708 * 59.99651 * 1 2 3 33 33 H 1.08998 * 109.46748 * 304.99248 * 4 2 1 34 34 H 1.09000 * 109.47234 * 64.99445 * 4 2 1 35 35 H 1.08996 * 109.47206 * 94.21773 * 6 5 4 36 36 H 1.08996 * 109.47065 * 214.22153 * 6 5 4 37 37 H 1.09002 * 109.46502 * 334.21945 * 6 5 4 38 38 H 0.96999 * 119.99768 * 179.97438 * 10 9 7 39 39 H 0.96998 * 119.99617 * 95.00485 * 15 2 1 40 40 H 1.08994 * 109.46618 * 300.00138 * 18 16 15 41 41 H 1.09006 * 109.46678 * 59.99611 * 18 16 15 42 42 H 1.08001 * 125.03284 * 359.93107 * 20 19 18 43 43 H 1.07997 * 120.02666 * 359.95867 * 24 23 21 44 44 H 1.08001 * 119.67624 * 180.20323 * 25 24 23 45 45 H 1.08000 * 120.18464 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.3343 0.2342 -1.7613 7 6 4.0849 -1.9158 -0.6024 8 1 3.5338 -2.8398 -0.5088 9 6 5.3863 -1.8325 -0.1266 10 7 5.9794 -0.6611 -0.0339 11 14 6.2957 -3.3828 0.3823 12 1 5.4148 -4.5615 0.1825 13 1 7.5190 -3.5336 -0.4462 14 1 6.6765 -3.2859 1.8143 15 7 2.0183 -0.6906 1.1961 16 6 2.1523 -0.0170 2.3557 17 8 1.8638 1.1597 2.4103 18 6 2.6606 -0.7259 3.5846 19 6 2.7170 0.2438 4.7367 20 6 3.7876 0.9488 5.1353 21 7 3.4604 1.7240 6.2141 22 1 4.0694 2.3204 6.6770 23 6 2.1364 1.5320 6.5442 24 6 1.3119 2.0589 7.5328 25 6 -0.0085 1.6740 7.6043 26 6 -0.5275 0.7513 6.7030 27 9 -1.8232 0.3794 6.7931 28 6 0.2731 0.2139 5.7187 29 6 1.6123 0.6006 5.6301 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6054 -1.7197 -1.2952 34 1 1.7515 -0.1581 -2.1370 35 1 4.6021 0.9457 -0.9803 36 1 5.2403 -0.2026 -2.1812 37 1 3.7809 0.7485 -2.5471 38 1 6.8887 -0.6029 0.2989 39 1 2.2491 -1.6317 1.1525 40 1 1.9894 -1.5478 3.8335 41 1 3.6590 -1.1181 3.3910 42 1 4.7630 0.9093 4.6732 43 1 1.7041 2.7774 8.2374 44 1 -0.6455 2.0884 8.3717 45 1 -0.1326 -0.5023 5.0196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483390415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:36 Heat of formation + Delta-G solvation = -23.252489 kcal Electronic energy + Delta-G solvation = -28832.368101 eV Core-core repulsion = 24764.590331 eV Total energy + Delta-G solvation = -4067.777770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.77491 -42.26191 -40.43062 -37.98384 -37.53923 -35.61556 -34.09829 -33.09414 -31.88729 -30.87880 -29.89092 -28.05136 -27.93039 -27.32619 -24.07415 -23.65642 -22.90637 -22.30150 -21.15550 -20.35042 -18.99437 -18.68730 -18.23496 -17.76327 -17.23714 -16.94842 -16.66953 -16.51607 -16.26269 -15.84933 -15.50939 -15.29670 -14.97678 -14.88045 -14.63283 -14.44222 -14.20727 -13.91031 -13.79123 -13.76034 -13.43403 -13.26422 -13.05405 -12.81352 -12.68908 -12.59991 -12.48841 -12.25541 -12.12158 -11.90391 -11.87486 -11.76922 -11.62390 -10.84523 -10.56383 -10.47838 -9.69407 -9.13121 -8.71567 -8.63206 -7.71578 -5.19309 0.00791 0.42090 1.50653 1.55951 1.59897 1.62831 1.96886 2.18227 2.56958 2.63463 2.82519 3.31714 3.43855 3.66656 3.76240 3.83533 4.02171 4.10177 4.16366 4.27657 4.34095 4.45006 4.50380 4.59605 4.63740 4.72991 4.78062 4.78801 4.84973 4.88186 4.95343 5.03897 5.07951 5.21993 5.22880 5.31448 5.36679 5.43884 5.66773 5.71499 5.72209 5.77221 5.91124 6.08999 6.40689 6.67297 6.93640 7.22974 7.61001 7.94627 8.41692 9.32187 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.003512 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.535447 B = 7970.844599 C = 9013.828579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.124 3.876 3 H 0.035 0.965 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.179 3.821 7 C -0.247 4.247 8 H 0.080 0.920 9 C -0.043 4.043 10 N -0.935 5.935 11 Si 0.954 3.046 12 H -0.262 1.262 13 H -0.305 1.305 14 H -0.292 1.292 15 N -0.691 5.691 16 C 0.512 3.488 17 O -0.593 6.593 18 C -0.060 4.060 19 C -0.173 4.173 20 C 0.073 3.927 21 N -0.578 5.578 22 H 0.434 0.566 23 C 0.075 3.925 24 C -0.090 4.090 25 C -0.135 4.135 26 C 0.053 3.947 27 F -0.151 7.151 28 C -0.122 4.122 29 C -0.089 4.089 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.069 0.931 35 H -0.007 1.007 36 H 0.020 0.980 37 H 0.024 0.976 38 H 0.242 0.758 39 H 0.406 0.594 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.185 0.815 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 2.048 13.337 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.054 0.946 4 C 0.016 3.984 5 N -0.333 5.333 6 C 0.034 3.966 7 C -0.377 4.377 8 H 0.098 0.902 9 C -0.238 4.238 10 N -0.582 5.582 11 Si 0.783 3.217 12 H -0.187 1.187 13 H -0.232 1.232 14 H -0.219 1.219 15 N -0.340 5.340 16 C 0.299 3.701 17 O -0.474 6.474 18 C -0.101 4.101 19 C -0.180 4.180 20 C -0.054 4.054 21 N -0.182 5.182 22 H 0.274 0.726 23 C -0.033 4.033 24 C -0.110 4.110 25 C -0.154 4.154 26 C 0.033 3.967 27 F -0.130 7.130 28 C -0.141 4.141 29 C -0.094 4.094 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.011 0.989 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.052 0.948 39 H 0.242 0.758 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.202 0.798 43 H 0.184 0.816 44 H 0.182 0.818 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.595 2.953 13.425 16.212 hybrid contribution 1.193 -0.724 0.106 1.399 sum -7.402 2.229 13.531 15.584 Atomic orbital electron populations 1.22017 0.94286 1.02509 1.01649 1.21612 0.93717 0.96031 0.87061 0.94627 1.21354 0.83393 0.99277 0.94415 1.44111 1.00724 1.22048 1.66443 1.20486 0.92736 0.90032 0.93336 1.19488 0.97095 0.90180 1.30925 0.90230 1.25607 0.99615 0.98147 1.00440 1.70279 1.13005 1.23389 1.51493 0.85403 0.78523 0.80766 0.76958 1.18661 1.23242 1.21910 1.45769 1.65250 1.14274 1.08698 1.20948 0.76766 0.86928 0.85445 1.90595 1.52950 1.17862 1.86029 1.19901 1.03956 0.97197 0.89007 1.19735 0.92916 1.05552 0.99843 1.21928 1.00295 0.93215 0.90007 1.41611 1.08932 1.39501 1.28113 0.72591 1.18535 0.85793 1.00123 0.98841 1.20189 0.91712 1.01435 0.97699 1.21028 0.96003 0.98280 1.00134 1.17498 0.78670 1.00957 0.99587 1.91445 1.34668 1.90796 1.96061 1.20446 0.92636 1.02176 0.98882 1.18928 0.93175 0.99831 0.97515 0.91046 0.94629 0.90416 0.91421 0.91282 0.98907 0.96163 0.95805 0.94812 0.75834 0.86876 0.87937 0.79779 0.81627 0.81751 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.49 71.98 0.68 -3.63 16 2 C 0.12 4.58 2.88 44.99 0.13 4.71 16 3 H 0.04 1.60 7.57 -2.39 -0.02 1.58 16 4 C 0.14 5.18 5.36 86.38 0.46 5.65 16 5 N -0.61 -28.12 2.82 -726.95 -2.05 -30.17 16 6 C 0.18 8.74 9.01 127.77 1.15 9.89 16 7 C -0.25 -11.95 8.02 84.03 0.67 -11.27 16 8 H 0.08 3.62 7.84 -2.91 -0.02 3.59 16 9 C -0.04 -2.19 5.13 84.86 0.44 -1.75 16 10 N -0.93 -52.24 10.59 21.65 0.23 -52.01 16 11 Si 0.95 41.46 29.57 68.60 2.03 43.49 16 12 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 13 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 14 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 15 N -0.69 -25.97 4.49 -442.55 -1.99 -27.96 16 16 C 0.51 20.27 7.79 87.66 0.68 20.95 16 17 O -0.59 -27.87 15.69 -3.03 -0.05 -27.91 16 18 C -0.06 -1.94 6.23 29.10 0.18 -1.76 16 19 C -0.17 -5.50 4.81 -18.63 -0.09 -5.59 16 20 C 0.07 2.00 11.73 83.00 0.97 2.98 16 21 N -0.58 -12.73 6.07 -187.58 -1.14 -13.87 16 22 H 0.43 6.10 8.96 -92.71 -0.83 5.27 16 23 C 0.07 1.89 7.27 39.00 0.28 2.17 16 24 C -0.09 -1.75 10.06 22.35 0.22 -1.53 16 25 C -0.13 -2.78 9.99 22.34 0.22 -2.56 16 26 C 0.05 1.41 7.29 22.35 0.16 1.58 16 27 F -0.15 -4.10 17.26 44.97 0.78 -3.33 16 28 C -0.12 -3.63 10.07 22.51 0.23 -3.41 16 29 C -0.09 -2.75 6.35 -20.20 -0.13 -2.88 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.23 8.03 -2.39 -0.02 2.21 16 34 H 0.07 2.27 7.86 -2.39 -0.02 2.25 16 35 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 36 H 0.02 1.05 7.19 -2.39 -0.02 1.03 16 37 H 0.02 0.99 7.84 -2.39 -0.02 0.98 16 38 H 0.24 13.39 8.31 -92.71 -0.77 12.62 16 39 H 0.41 14.54 7.40 -92.71 -0.69 13.85 16 40 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 42 H 0.19 4.50 8.06 -2.91 -0.02 4.47 16 43 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -70.38 380.67 3.60 -66.78 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.49 Total: 31.44 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 6.28 Total: 13.54 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -4.94 Total: -124.01 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -70.38 3.60 -66.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483390415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.528 kcal (2) G-P(sol) polarization free energy of solvation -70.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds