Wall clock time and date at job start Tue Mar 31 2020 17:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.30345 * 2 1 4 4 C 1.54386 * 110.42876 * 237.76470 * 2 1 3 5 5 N 1.48145 * 104.62048 * 264.95008 * 4 2 1 6 6 C 1.34775 * 127.84184 * 140.41848 * 5 4 2 7 7 O 1.21517 * 119.99763 * 3.60704 * 6 5 4 8 8 C 1.48132 * 119.99986 * 183.61099 * 6 5 4 9 9 C 1.40112 * 121.14405 * 155.50093 * 8 6 5 10 10 C 1.38500 * 117.82610 * 179.73625 * 9 8 6 11 11 N 1.31919 * 119.96476 * 0.54381 * 10 9 8 12 12 N 1.28280 * 122.51855 * 359.71579 * 11 10 9 13 13 C 1.31926 * 122.31985 * 0.02562 * 12 11 10 14 14 C 1.48151 * 104.32205 * 320.41421 * 5 4 2 15 15 C 1.54281 * 110.34237 * 122.17776 * 2 1 3 16 16 H 1.09005 * 110.34371 * 237.84920 * 15 2 1 17 17 N 1.46906 * 110.34672 * 0.10159 * 15 2 1 18 18 C 1.46888 * 111.00247 * 196.79916 * 17 15 2 19 19 C 1.50696 * 109.47397 * 179.97438 * 18 17 15 20 20 O 1.21299 * 119.99923 * 0.02562 * 19 18 17 21 21 N 1.34778 * 120.00401 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99959 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99757 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99809 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99954 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99870 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46767 * 60.00355 * 26 24 22 28 28 H 1.48507 * 109.46711 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47209 * 299.99898 * 26 24 22 30 30 H 1.09006 * 109.46763 * 304.60324 * 1 2 3 31 31 H 1.08995 * 109.47254 * 64.60315 * 1 2 3 32 32 H 1.08997 * 109.47163 * 184.60716 * 1 2 3 33 33 H 1.09000 * 110.41102 * 23.73696 * 4 2 1 34 34 H 1.09004 * 110.40431 * 146.04990 * 4 2 1 35 35 H 1.08000 * 121.08815 * 359.97438 * 9 8 6 36 36 H 1.07992 * 120.02142 * 180.25905 * 10 9 8 37 37 H 1.08010 * 120.16656 * 180.02562 * 13 12 11 38 38 H 1.08999 * 110.41027 * 280.80331 * 14 5 4 39 39 H 1.09004 * 110.40628 * 158.36642 * 14 5 4 40 40 H 1.00896 * 110.99422 * 320.75749 * 17 15 2 41 41 H 1.09003 * 109.47688 * 300.00626 * 18 17 15 42 42 H 1.09007 * 109.47116 * 60.00135 * 18 17 15 43 43 H 0.96996 * 119.99976 * 0.02562 * 21 19 18 44 44 H 0.96999 * 119.99543 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0689 -0.7717 -1.2238 5 7 2.3177 -2.1429 -0.7213 6 6 2.0834 -3.3102 -1.3530 7 8 1.6737 -3.3103 -2.4970 8 6 2.3254 -4.5929 -0.6527 9 6 1.6537 -5.7629 -1.0309 10 6 1.9365 -6.9252 -0.3327 11 7 2.8057 -6.9029 0.6593 12 7 3.4200 -5.8341 1.0141 13 6 3.2266 -4.6764 0.4117 14 6 2.8825 -1.9401 0.6332 15 6 2.0664 -0.7704 1.2244 16 1 2.7081 -0.1265 1.8259 17 7 0.9524 -1.2825 2.0337 18 6 1.4085 -1.6601 3.3780 19 6 0.2410 -2.1790 4.1772 20 8 -0.8624 -2.2297 3.6760 21 7 0.4229 -2.5867 5.4489 22 6 -0.6393 -3.0593 6.1758 23 1 -1.6217 -3.1044 5.7295 24 6 -0.4519 -3.4791 7.4870 25 7 0.7435 -3.4237 8.0302 26 14 -1.8991 -4.1223 8.4776 27 1 -2.4741 -5.3114 7.7989 28 1 -1.4381 -4.5035 9.8369 29 1 -2.9352 -3.0640 8.5845 30 1 -0.3633 0.5836 0.8459 31 1 -0.3633 0.4407 -0.9283 32 1 -0.3633 -1.0243 0.0825 33 1 1.3253 -0.7880 -2.0205 34 1 2.9957 -0.3213 -1.5791 35 1 0.9416 -5.7595 -1.8429 36 1 1.4423 -7.8482 -0.5973 37 1 3.7632 -3.7980 0.7389 38 1 3.9374 -1.6733 0.5692 39 1 2.7525 -2.8379 1.2376 40 1 0.2017 -0.6101 2.0821 41 1 2.1691 -2.4369 3.2989 42 1 1.8307 -0.7877 3.8769 43 1 1.3051 -2.5459 5.8499 44 1 0.8743 -3.7172 8.9454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570354928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:21 Heat of formation + Delta-G solvation = 22.707222 kcal Electronic energy + Delta-G solvation = -28905.249540 eV Core-core repulsion = 24859.384695 eV Total energy + Delta-G solvation = -4045.864845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47578 -40.18867 -38.61235 -37.88232 -34.78689 -33.92817 -33.59816 -33.03311 -32.06219 -31.22793 -29.13558 -27.53113 -26.26353 -25.42096 -24.65718 -24.14374 -22.79412 -20.40657 -19.85989 -19.26928 -18.35553 -17.90704 -17.35654 -17.05669 -16.80257 -16.25333 -15.84177 -15.34005 -15.06156 -14.86103 -14.63109 -14.48188 -14.12252 -13.96003 -13.84594 -13.71506 -13.44446 -13.00268 -12.84894 -12.37126 -12.21078 -12.05103 -11.68492 -11.55324 -11.21476 -11.15923 -11.09444 -10.98667 -10.89826 -10.66371 -10.45625 -10.42150 -10.25401 -10.23280 -9.80193 -9.52497 -9.06054 -8.51920 -8.17237 -7.98960 -6.43738 -3.84810 0.17149 0.66609 2.39509 2.58517 3.18790 3.25028 3.29117 3.41309 3.84018 3.85397 3.89147 3.98856 4.15418 4.20426 4.28606 4.32077 4.40265 4.62768 4.76752 4.91015 5.03538 5.07122 5.17849 5.18524 5.23035 5.30285 5.31899 5.37936 5.47831 5.56092 5.56827 5.70734 5.78143 5.80311 5.86678 5.87283 5.97628 6.21900 6.33422 7.09325 7.14712 7.51241 7.53020 7.74342 8.03063 8.45971 8.57956 9.15259 9.50952 10.01906 10.73738 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003582 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.326133 B = 7814.692461 C = 9523.506109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 H 0.089 0.911 4 C 0.114 3.886 5 N -0.602 5.602 6 C 0.590 3.410 7 O -0.531 6.531 8 C -0.123 4.123 9 C -0.059 4.059 10 C 0.039 3.961 11 N -0.226 5.226 12 N -0.237 5.237 13 C 0.056 3.944 14 C 0.083 3.917 15 C 0.074 3.926 16 H 0.064 0.936 17 N -0.661 5.661 18 C 0.046 3.954 19 C 0.438 3.562 20 O -0.584 6.584 21 N -0.561 5.561 22 C -0.301 4.301 23 H 0.102 0.898 24 C 0.024 3.976 25 N -0.900 5.900 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.186 0.814 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.358 0.642 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.392 0.608 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.952 4.506 -17.132 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 H 0.107 0.893 4 C -0.008 4.008 5 N -0.334 5.334 6 C 0.377 3.623 7 O -0.408 6.408 8 C -0.138 4.138 9 C -0.090 4.090 10 C -0.125 4.125 11 N -0.069 5.069 12 N -0.078 5.078 13 C -0.108 4.108 14 C -0.040 4.040 15 C -0.037 4.037 16 H 0.081 0.919 17 N -0.297 5.297 18 C -0.087 4.087 19 C 0.224 3.776 20 O -0.469 6.469 21 N -0.197 5.197 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.541 5.541 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.199 1.199 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.178 0.822 36 H 0.198 0.802 37 H 0.203 0.797 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.182 0.818 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.226 0.774 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.860 2.847 -16.977 18.923 hybrid contribution -0.746 1.375 0.289 1.591 sum 7.114 4.221 -16.687 18.625 Atomic orbital electron populations 1.21770 0.93384 1.03905 1.01323 1.22258 0.97739 0.98786 0.93598 0.89286 1.22441 1.01099 0.80271 0.97033 1.48590 1.62160 1.05318 1.17365 1.17405 0.77679 0.81914 0.85253 1.90796 1.46375 1.86702 1.16971 1.21050 0.99422 0.95419 0.97859 1.22569 0.96590 0.91389 0.98405 1.24397 0.95896 0.99394 0.92777 1.72905 1.03569 1.19937 1.10442 1.73138 1.17278 0.95477 1.21901 1.25176 0.95413 0.99152 0.91099 1.23156 0.96814 1.00779 0.83282 1.22454 0.93124 0.93798 0.94362 0.91858 1.60319 1.09022 1.47651 1.12718 1.21756 0.97653 1.00035 0.89220 1.19743 0.89687 0.85099 0.83086 1.90528 1.25875 1.60036 1.70448 1.41850 1.11686 1.55715 1.10447 1.19635 0.90783 1.38581 0.94080 0.88035 1.25256 0.97788 0.97567 0.97149 1.69601 1.21406 1.47598 1.15486 0.85928 0.80655 0.79376 0.78331 1.19868 1.20902 1.19915 0.92208 0.92631 0.90421 0.89423 0.90632 0.82166 0.80230 0.79747 0.89744 0.88134 0.81796 0.89859 0.93586 0.77447 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 7.81 37.16 0.29 -1.20 16 2 C -0.10 -0.88 3.65 -89.22 -0.33 -1.20 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.11 1.00 6.59 -2.41 -0.02 0.99 16 5 N -0.60 -6.47 3.32 -170.30 -0.56 -7.03 16 6 C 0.59 7.64 7.77 -12.20 -0.09 7.54 16 7 O -0.53 -8.18 17.02 5.35 0.09 -8.08 16 8 C -0.12 -1.52 5.82 -104.58 -0.61 -2.13 16 9 C -0.06 -0.66 9.79 -38.78 -0.38 -1.04 16 10 C 0.04 0.43 11.30 -17.42 -0.20 0.23 16 11 N -0.23 -3.22 11.48 30.52 0.35 -2.87 16 12 N -0.24 -3.46 11.49 30.78 0.35 -3.10 16 13 C 0.06 0.68 9.36 -16.96 -0.16 0.52 16 14 C 0.08 0.77 4.94 -2.40 -0.01 0.76 16 15 C 0.07 0.73 3.35 -66.31 -0.22 0.51 16 16 H 0.06 0.53 7.95 -51.93 -0.41 0.12 16 17 N -0.66 -9.36 4.98 -106.51 -0.53 -9.89 16 18 C 0.05 0.74 5.96 -4.98 -0.03 0.71 16 19 C 0.44 10.02 7.82 -10.99 -0.09 9.94 16 20 O -0.58 -15.50 15.78 5.54 0.09 -15.41 16 21 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 22 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 24 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 25 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 26 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.06 0.61 7.10 -51.93 -0.37 0.24 16 31 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.08 1.03 7.50 -51.93 -0.39 0.65 16 33 H 0.09 0.86 7.63 -51.93 -0.40 0.47 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.16 1.47 7.97 -52.49 -0.42 1.05 16 36 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.19 1.77 4.78 -52.48 -0.25 1.52 16 38 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 39 H 0.10 1.09 4.06 -51.93 -0.21 0.88 16 40 H 0.36 5.35 5.82 -39.29 -0.23 5.12 16 41 H 0.08 1.24 7.36 -51.93 -0.38 0.86 16 42 H 0.05 0.65 8.09 -51.92 -0.42 0.23 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -34.99 364.83 -6.58 -41.57 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -5.42 Total: 13.28 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -2.08 Total: 7.68 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.28 Total: -60.56 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.18 Total: -23.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.99 -6.58 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570354928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.275 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds