Wall clock time and date at job start Tue Mar 31 2020 17:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.30345 * 2 1 4 4 C 1.54386 * 110.42876 * 237.76470 * 2 1 3 5 5 N 1.48145 * 104.62048 * 264.95008 * 4 2 1 6 6 C 1.34775 * 127.84184 * 140.41848 * 5 4 2 7 7 O 1.21517 * 119.99763 * 3.60704 * 6 5 4 8 8 C 1.48132 * 119.99986 * 183.61099 * 6 5 4 9 9 C 1.40112 * 121.14405 * 155.50093 * 8 6 5 10 10 C 1.38500 * 117.82610 * 179.73625 * 9 8 6 11 11 N 1.31919 * 119.96476 * 0.54381 * 10 9 8 12 12 N 1.28280 * 122.51855 * 359.71579 * 11 10 9 13 13 C 1.31926 * 122.31985 * 0.02562 * 12 11 10 14 14 C 1.48151 * 104.32205 * 320.41421 * 5 4 2 15 15 C 1.54281 * 110.34237 * 122.17776 * 2 1 3 16 16 H 1.09005 * 110.34371 * 237.84920 * 15 2 1 17 17 N 1.46906 * 110.34672 * 0.10159 * 15 2 1 18 18 C 1.46888 * 111.00247 * 196.79916 * 17 15 2 19 19 C 1.50696 * 109.47397 * 179.97438 * 18 17 15 20 20 O 1.21299 * 119.99923 * 0.02562 * 19 18 17 21 21 N 1.34778 * 120.00401 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99959 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99757 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99809 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99954 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99870 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46767 * 60.00355 * 26 24 22 28 28 H 1.48507 * 109.46711 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47209 * 299.99898 * 26 24 22 30 30 H 1.09006 * 109.46763 * 304.60324 * 1 2 3 31 31 H 1.08995 * 109.47254 * 64.60315 * 1 2 3 32 32 H 1.08997 * 109.47163 * 184.60716 * 1 2 3 33 33 H 1.09000 * 110.41102 * 23.73696 * 4 2 1 34 34 H 1.09004 * 110.40431 * 146.04990 * 4 2 1 35 35 H 1.08000 * 121.08815 * 359.97438 * 9 8 6 36 36 H 1.07992 * 120.02142 * 180.25905 * 10 9 8 37 37 H 1.08010 * 120.16656 * 180.02562 * 13 12 11 38 38 H 1.08999 * 110.41027 * 280.80331 * 14 5 4 39 39 H 1.09004 * 110.40628 * 158.36642 * 14 5 4 40 40 H 1.00896 * 110.99422 * 320.75749 * 17 15 2 41 41 H 1.09003 * 109.47688 * 300.00626 * 18 17 15 42 42 H 1.09007 * 109.47116 * 60.00135 * 18 17 15 43 43 H 0.96996 * 119.99976 * 0.02562 * 21 19 18 44 44 H 0.96999 * 119.99543 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0689 -0.7717 -1.2238 5 7 2.3177 -2.1429 -0.7213 6 6 2.0834 -3.3102 -1.3530 7 8 1.6737 -3.3103 -2.4970 8 6 2.3254 -4.5929 -0.6527 9 6 1.6537 -5.7629 -1.0309 10 6 1.9365 -6.9252 -0.3327 11 7 2.8057 -6.9029 0.6593 12 7 3.4200 -5.8341 1.0141 13 6 3.2266 -4.6764 0.4117 14 6 2.8825 -1.9401 0.6332 15 6 2.0664 -0.7704 1.2244 16 1 2.7081 -0.1265 1.8259 17 7 0.9524 -1.2825 2.0337 18 6 1.4085 -1.6601 3.3780 19 6 0.2410 -2.1790 4.1772 20 8 -0.8624 -2.2297 3.6760 21 7 0.4229 -2.5867 5.4489 22 6 -0.6393 -3.0593 6.1758 23 1 -1.6217 -3.1044 5.7295 24 6 -0.4519 -3.4791 7.4870 25 7 0.7435 -3.4237 8.0302 26 14 -1.8991 -4.1223 8.4776 27 1 -2.4741 -5.3114 7.7989 28 1 -1.4381 -4.5035 9.8369 29 1 -2.9352 -3.0640 8.5845 30 1 -0.3633 0.5836 0.8459 31 1 -0.3633 0.4407 -0.9283 32 1 -0.3633 -1.0243 0.0825 33 1 1.3253 -0.7880 -2.0205 34 1 2.9957 -0.3213 -1.5791 35 1 0.9416 -5.7595 -1.8429 36 1 1.4423 -7.8482 -0.5973 37 1 3.7632 -3.7980 0.7389 38 1 3.9374 -1.6733 0.5692 39 1 2.7525 -2.8379 1.2376 40 1 0.2017 -0.6101 2.0821 41 1 2.1691 -2.4369 3.2989 42 1 1.8307 -0.7877 3.8769 43 1 1.3051 -2.5459 5.8499 44 1 0.8743 -3.7172 8.9454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570354928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:20 Heat of formation + Delta-G solvation = -4.889521 kcal Electronic energy + Delta-G solvation = -28906.446225 eV Core-core repulsion = 24859.384695 eV Total energy + Delta-G solvation = -4047.061530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39337 -41.08059 -40.11982 -39.13949 -36.17117 -35.53933 -34.61391 -33.95571 -33.28698 -32.90161 -30.08802 -28.55476 -27.59424 -26.35684 -25.86337 -25.43781 -23.71724 -21.41451 -20.94518 -20.61294 -19.91222 -19.26298 -18.24520 -18.04906 -17.68224 -17.53635 -17.00299 -16.69866 -16.31448 -16.12426 -15.90836 -15.65632 -15.37172 -15.28621 -14.98332 -14.66591 -14.36849 -14.15733 -14.00740 -13.64521 -13.48359 -13.15662 -13.03178 -12.91648 -12.78139 -12.44485 -12.14354 -12.09048 -11.96602 -11.82507 -11.75975 -11.58636 -11.50860 -11.36562 -11.18203 -10.76150 -10.33604 -10.01727 -9.88249 -9.26001 -8.47203 -5.95743 -0.76836 -0.21621 1.38139 1.40354 1.47374 1.50822 1.72883 2.05735 2.28044 2.48726 2.91467 2.96958 3.05894 3.20505 3.30572 3.40228 3.47295 3.59464 3.66642 3.77079 4.04663 4.20212 4.29048 4.31761 4.40628 4.42955 4.47744 4.55001 4.63227 4.66626 4.67699 4.70606 4.76742 4.87905 4.98488 5.03565 5.04614 5.23363 5.39750 5.48585 5.90811 6.13327 6.27612 6.41795 6.59954 6.81909 7.12467 7.51389 7.56643 8.12099 8.69824 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003582 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.326133 B = 7814.692461 C = 9523.506109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.125 0.875 4 C 0.110 3.890 5 N -0.600 5.600 6 C 0.585 3.415 7 O -0.566 6.566 8 C -0.137 4.137 9 C -0.061 4.061 10 C 0.045 3.955 11 N -0.261 5.261 12 N -0.270 5.270 13 C 0.059 3.941 14 C 0.079 3.921 15 C 0.072 3.928 16 H 0.095 0.905 17 N -0.678 5.678 18 C 0.063 3.937 19 C 0.435 3.565 20 O -0.626 6.626 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.076 0.924 24 C -0.010 4.010 25 N -0.918 5.918 26 Si 0.989 3.011 27 H -0.275 1.275 28 H -0.269 1.269 29 H -0.270 1.270 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.177 0.823 36 H 0.217 0.783 37 H 0.209 0.791 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.351 0.649 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.397 0.603 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.311 5.838 -17.441 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.143 0.857 4 C -0.011 4.011 5 N -0.331 5.331 6 C 0.373 3.627 7 O -0.446 6.446 8 C -0.152 4.152 9 C -0.091 4.091 10 C -0.120 4.120 11 N -0.102 5.102 12 N -0.110 5.110 13 C -0.106 4.106 14 C -0.043 4.043 15 C -0.038 4.038 16 H 0.113 0.887 17 N -0.315 5.315 18 C -0.070 4.070 19 C 0.223 3.777 20 O -0.513 6.513 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.094 0.906 24 C -0.210 4.210 25 N -0.559 5.559 26 Si 0.813 3.187 27 H -0.201 1.201 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.195 0.805 36 H 0.233 0.767 37 H 0.225 0.775 38 H 0.145 0.855 39 H 0.102 0.898 40 H 0.174 0.826 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.270 4.202 -17.258 20.036 hybrid contribution -1.220 1.015 0.295 1.614 sum 8.051 5.217 -16.964 19.488 Atomic orbital electron populations 1.21704 0.95198 1.01425 1.01790 1.22280 0.96054 1.00389 0.92586 0.85711 1.22659 1.02310 0.79311 0.96807 1.48706 1.61055 1.05482 1.17894 1.17487 0.77578 0.82624 0.84996 1.90770 1.48285 1.87212 1.18324 1.21221 0.99934 0.95820 0.98192 1.22894 0.96422 0.91208 0.98556 1.24937 0.94814 1.00750 0.91457 1.72797 1.04965 1.20432 1.12039 1.73040 1.18530 0.96265 1.23213 1.25491 0.95271 0.99183 0.90654 1.23399 0.98921 0.99953 0.82071 1.22647 0.92201 0.94495 0.94470 0.88734 1.60306 1.10673 1.48637 1.11865 1.21591 0.94527 1.01308 0.89537 1.20991 0.91095 0.83089 0.82559 1.90498 1.28406 1.61192 1.71191 1.41930 1.11215 1.56518 1.11316 1.19579 0.90826 1.40776 0.95265 0.90608 1.25983 1.00334 0.97220 0.97493 1.69656 1.22600 1.47700 1.15923 0.85051 0.77764 0.78590 0.77324 1.20072 1.19358 1.19560 0.92467 0.91525 0.94237 0.90885 0.87433 0.80545 0.76665 0.77476 0.85496 0.89823 0.82550 0.88193 0.90730 0.76957 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 7.81 71.98 0.56 -2.19 16 2 C -0.09 -1.26 3.65 -9.89 -0.04 -1.30 16 3 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 4 C 0.11 1.63 6.59 86.53 0.57 2.20 16 5 N -0.60 -11.69 3.32 -811.01 -2.69 -14.38 16 6 C 0.59 14.77 7.77 86.87 0.67 15.44 16 7 O -0.57 -17.37 17.02 -3.77 -0.06 -17.44 16 8 C -0.14 -3.35 5.82 -19.84 -0.12 -3.46 16 9 C -0.06 -1.33 9.79 22.79 0.22 -1.10 16 10 C 0.04 0.96 11.30 84.74 0.96 1.92 16 11 N -0.26 -7.47 11.48 -57.34 -0.66 -8.13 16 12 N -0.27 -7.92 11.49 -56.53 -0.65 -8.57 16 13 C 0.06 1.40 9.36 85.04 0.80 2.20 16 14 C 0.08 1.21 4.94 86.53 0.43 1.63 16 15 C 0.07 1.16 3.35 45.82 0.15 1.31 16 16 H 0.10 1.05 7.95 -2.38 -0.02 1.03 16 17 N -0.68 -18.17 4.98 -490.89 -2.45 -20.61 16 18 C 0.06 1.91 5.96 85.56 0.51 2.42 16 19 C 0.43 20.05 7.82 87.66 0.69 20.74 16 20 O -0.63 -34.17 15.78 -3.09 -0.05 -34.22 16 21 N -0.57 -28.98 5.29 -306.98 -1.62 -30.60 16 22 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 25 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 26 Si 0.99 43.18 29.55 68.60 2.03 45.20 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 30 H 0.06 1.11 7.10 -2.38 -0.02 1.10 16 31 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 32 H 0.04 1.06 7.50 -2.39 -0.02 1.04 16 33 H 0.07 1.33 7.63 -2.39 -0.02 1.31 16 34 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.18 3.15 7.97 -2.91 -0.02 3.13 16 36 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.21 3.63 4.78 -2.91 -0.01 3.61 16 38 H 0.13 0.95 8.13 -2.39 -0.02 0.93 16 39 H 0.08 1.63 4.06 -2.38 -0.01 1.62 16 40 H 0.35 10.24 5.82 -89.70 -0.52 9.72 16 41 H 0.10 2.76 7.36 -2.39 -0.02 2.74 16 42 H 0.07 1.88 8.09 -2.38 -0.02 1.86 16 43 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 44 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -79.76 364.83 0.64 -79.12 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.18 Total: 37.28 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 6.69 Total: 21.51 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -7.78 Total: -131.46 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.11 Total: -51.65 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -79.76 0.64 -79.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570354928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.229 kcal (2) G-P(sol) polarization free energy of solvation -79.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds