Wall clock time and date at job start Tue Mar 31 2020 18:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47137 * 2 1 4 4 C 1.36932 * 119.99968 * 270.38098 * 3 2 1 5 5 H 1.08001 * 120.00226 * 325.86008 * 4 3 2 6 6 C 1.38820 * 119.99913 * 145.85402 * 4 3 2 7 7 N 1.31622 * 119.99814 * 337.17518 * 6 4 3 8 8 Si 1.86793 * 120.00079 * 157.17328 * 6 4 3 9 9 H 1.48497 * 109.47360 * 90.00256 * 8 6 4 10 10 H 1.48500 * 109.47039 * 210.00241 * 8 6 4 11 11 H 1.48510 * 109.47047 * 329.99872 * 8 6 4 12 12 C 1.46503 * 119.99933 * 90.38525 * 3 2 1 13 13 C 1.52998 * 109.47203 * 89.99945 * 12 3 2 14 14 H 1.09007 * 109.47078 * 304.99746 * 13 12 3 15 15 O 1.42898 * 109.47031 * 64.99777 * 13 12 3 16 16 C 1.52999 * 109.47451 * 185.00015 * 13 12 3 17 17 O 1.42896 * 109.47679 * 175.00018 * 16 13 12 18 18 C 1.35838 * 117.00223 * 179.97438 * 17 16 13 19 19 C 1.38590 * 120.11841 * 359.72571 * 18 17 16 20 20 C 1.38176 * 120.05988 * 179.76462 * 19 18 17 21 21 C 1.38384 * 120.29729 * 0.51356 * 20 19 18 22 22 C 1.38021 * 120.23071 * 359.73957 * 21 20 19 23 23 C 1.39267 * 119.93882 * 0.02562 * 22 21 20 24 24 C 1.48395 * 120.14585 * 180.02562 * 23 22 21 25 25 N 1.34063 * 126.67333 * 179.66830 * 24 23 22 26 26 N 1.28990 * 107.26629 * 179.83598 * 25 24 23 27 27 N 1.28736 * 108.94774 * 0.43454 * 26 25 24 28 28 H 0.96999 * 125.34238 * 179.72796 * 27 26 25 29 29 N 1.28876 * 109.32211 * 359.72092 * 27 26 25 30 30 H 1.08999 * 109.46973 * 60.00209 * 1 2 3 31 31 H 1.08997 * 109.47493 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47165 * 300.00392 * 1 2 3 33 33 H 1.08996 * 109.47165 * 239.99608 * 2 1 3 34 34 H 1.08999 * 109.46973 * 119.99791 * 2 1 3 35 35 H 0.96997 * 120.00032 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.46783 * 329.99821 * 12 3 2 37 37 H 1.08998 * 109.46743 * 209.99982 * 12 3 2 38 38 H 0.96698 * 114.00219 * 60.00075 * 15 13 12 39 39 H 1.08997 * 109.46863 * 54.99578 * 16 13 12 40 40 H 1.09002 * 109.46940 * 294.99970 * 16 13 12 41 41 H 1.08005 * 119.96877 * 359.97438 * 19 18 17 42 42 H 1.08002 * 119.85199 * 180.23116 * 20 19 18 43 43 H 1.07992 * 119.88402 * 179.76640 * 21 20 19 44 44 H 1.07993 * 120.02573 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2391 2.0294 -1.1858 5 1 2.5952 1.4788 -2.0441 6 6 2.0052 3.3941 -1.2850 7 7 1.1790 3.9828 -0.4463 8 14 2.8629 4.3950 -2.6085 9 1 2.0259 4.4143 -3.8349 10 1 3.0649 5.7846 -2.1252 11 1 4.1798 3.7820 -2.9173 12 6 2.2705 2.0690 1.2687 13 6 3.7183 1.8276 1.7007 14 1 3.9113 0.7555 1.7416 15 8 4.6041 2.4355 0.7585 16 6 3.9467 2.4400 3.0841 17 8 5.2621 2.1149 3.5378 18 6 5.6276 2.5862 4.7582 19 6 4.7426 3.3504 5.5022 20 6 5.1140 3.8252 6.7455 21 6 6.3728 3.5504 7.2504 22 6 7.2657 2.7949 6.5176 23 6 6.8998 2.3074 5.2654 24 6 7.8560 1.4942 4.4738 25 7 7.6407 0.9571 3.2644 26 7 8.7173 0.3325 2.9258 27 7 9.5836 0.4499 3.8708 28 1 10.4752 0.0681 3.8653 29 7 9.0803 1.1545 4.8254 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.0152 4.9363 -0.5158 36 1 1.5945 1.6831 2.0318 37 1 2.1027 3.1385 1.1418 38 1 4.4885 3.3914 0.6699 39 1 3.2121 2.0413 3.7837 40 1 3.8405 3.5232 3.0239 41 1 3.7606 3.5722 5.1111 42 1 4.4203 4.4173 7.3240 43 1 6.6574 3.9280 8.2213 44 1 8.2470 2.5821 6.9149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590679830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:52 Heat of formation + Delta-G solvation = 90.487244 kcal Electronic energy + Delta-G solvation = -28777.470994 eV Core-core repulsion = 24734.545310 eV Total energy + Delta-G solvation = -4042.925683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.31607 -40.13007 -37.83400 -36.58934 -34.75587 -34.29380 -33.55419 -31.75678 -30.76334 -30.53956 -29.68177 -28.34216 -25.67454 -24.75062 -24.28979 -23.50705 -22.17020 -21.71852 -20.93957 -19.91475 -19.21151 -18.01161 -17.03553 -16.93363 -16.28624 -16.03402 -15.88695 -14.97939 -14.74679 -14.56260 -14.17546 -14.08487 -14.00229 -13.67322 -13.46542 -13.14287 -12.75694 -12.56765 -12.17889 -12.12874 -11.89564 -11.67846 -11.31632 -11.23256 -11.12339 -11.06583 -10.93392 -10.89085 -10.74778 -10.64670 -10.39800 -10.08184 -10.01475 -9.91663 -9.72020 -9.12780 -8.94935 -8.45509 -8.12680 -6.56544 -5.74645 -3.25218 0.68263 1.27710 1.35953 2.28928 2.43044 3.30188 3.41489 3.48794 3.57657 3.71164 3.75290 4.26026 4.55067 4.77359 4.83708 5.05123 5.16234 5.24983 5.26273 5.37603 5.41557 5.46580 5.53371 5.58901 5.69911 5.78006 5.91303 6.12442 6.17846 6.20072 6.24652 6.33923 6.36415 6.43325 6.52438 6.58806 6.64679 6.67694 6.83834 6.99947 7.26226 7.53376 7.57770 7.87654 8.30028 8.51760 8.65666 9.21516 9.85234 10.40595 11.26359 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.012231 B = 0.003316 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.667621 B = 8441.086130 C = 8945.963487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.575 5.575 4 C -0.230 4.230 5 H 0.060 0.940 6 C 0.004 3.996 7 N -0.897 5.897 8 Si 0.892 3.108 9 H -0.289 1.289 10 H -0.291 1.291 11 H -0.276 1.276 12 C 0.117 3.883 13 C 0.096 3.904 14 H 0.088 0.912 15 O -0.534 6.534 16 C 0.023 3.977 17 O -0.273 6.273 18 C 0.179 3.821 19 C -0.217 4.217 20 C -0.056 4.056 21 C -0.172 4.172 22 C -0.042 4.042 23 C -0.064 4.064 24 C 0.226 3.774 25 N -0.230 5.230 26 N -0.055 5.055 27 N -0.238 5.238 28 H 0.471 0.529 29 N -0.308 5.308 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.032 0.968 35 H 0.252 0.748 36 H 0.031 0.969 37 H 0.107 0.893 38 H 0.363 0.637 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.571 -2.447 16.652 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.294 5.294 4 C -0.360 4.360 5 H 0.077 0.923 6 C -0.194 4.194 7 N -0.541 5.541 8 Si 0.722 3.278 9 H -0.216 1.216 10 H -0.217 1.217 11 H -0.201 1.201 12 C -0.010 4.010 13 C 0.033 3.967 14 H 0.106 0.894 15 O -0.337 6.337 16 C -0.053 4.053 17 O -0.183 6.183 18 C 0.128 3.872 19 C -0.236 4.236 20 C -0.075 4.075 21 C -0.191 4.191 22 C -0.063 4.063 23 C -0.068 4.068 24 C -0.053 4.053 25 N -0.103 5.103 26 N -0.051 5.051 27 N -0.082 5.082 28 H 0.324 0.676 29 N -0.160 5.160 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.124 0.876 38 H 0.208 0.792 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.002 -3.412 15.852 20.174 hybrid contribution 0.392 1.334 -0.020 1.390 sum 12.393 -2.078 15.833 20.214 Atomic orbital electron populations 1.22272 0.99659 0.98371 1.01859 1.20886 0.91909 0.87382 0.98348 1.43651 1.73807 1.09934 1.02004 1.19001 1.35897 0.91174 0.89947 0.92268 1.24952 0.97752 0.98407 0.98241 1.69973 1.34217 1.10221 1.39735 0.86460 0.80333 0.79387 0.81662 1.21638 1.21671 1.20096 1.21536 0.89470 1.02911 0.87112 1.22866 0.93950 0.97268 0.82577 0.89387 1.86604 1.59591 1.24916 1.62548 1.24023 0.81453 1.00793 0.99075 1.86465 1.33719 1.69516 1.28630 1.19095 0.91684 0.90744 0.85637 1.21312 1.01101 1.04082 0.97113 1.21118 0.95964 0.96174 0.94282 1.20911 0.94356 1.02720 1.01091 1.20954 0.99647 0.94325 0.91337 1.16537 0.90264 1.04898 0.95145 1.23440 0.90084 0.99803 0.92011 1.76493 1.14210 1.08772 1.10776 1.79053 0.94892 1.16861 1.14245 1.47722 1.16912 1.34248 1.09346 0.67553 1.74822 1.11496 1.13622 1.16077 0.92650 0.95072 0.93903 0.93851 0.94923 0.93805 0.95078 0.87616 0.79202 0.91703 0.91801 0.84449 0.85399 0.85399 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 10.24 37.16 0.38 -2.83 16 2 C 0.14 2.99 6.39 -4.04 -0.03 2.96 16 3 N -0.57 -13.94 2.43 -173.24 -0.42 -14.36 16 4 C -0.23 -6.19 8.99 -15.06 -0.14 -6.33 16 5 H 0.06 1.64 7.93 -52.49 -0.42 1.23 16 6 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 7 N -0.90 -24.57 11.32 55.49 0.63 -23.95 16 8 Si 0.89 21.45 29.61 -169.99 -5.03 16.42 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.12 2.57 4.97 -4.04 -0.02 2.55 16 13 C 0.10 1.90 3.49 -26.73 -0.09 1.81 16 14 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 15 O -0.53 -11.85 12.78 -40.08 -0.51 -12.36 16 16 C 0.02 0.37 4.37 37.16 0.16 0.53 16 17 O -0.27 -4.69 8.45 -24.08 -0.20 -4.89 16 18 C 0.18 2.63 6.69 -38.88 -0.26 2.37 16 19 C -0.22 -2.63 9.03 -39.47 -0.36 -2.99 16 20 C -0.06 -0.55 10.03 -39.55 -0.40 -0.95 16 21 C -0.17 -1.60 10.03 -39.61 -0.40 -2.00 16 22 C -0.04 -0.46 9.70 -39.28 -0.38 -0.84 16 23 C -0.06 -0.90 5.89 -104.76 -0.62 -1.52 16 24 C 0.23 3.41 7.91 -156.30 -1.24 2.18 16 25 N -0.23 -3.98 11.06 32.15 0.36 -3.62 16 26 N -0.05 -0.80 13.47 60.35 0.81 0.01 16 27 N -0.24 -2.49 7.90 60.35 0.48 -2.01 16 28 H 0.47 2.41 8.96 -340.35 -3.05 -0.64 16 29 N -0.31 -3.82 12.08 32.16 0.39 -3.43 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.92 8.04 -51.93 -0.42 0.50 16 34 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 35 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 37 H 0.11 2.57 5.32 -51.93 -0.28 2.30 16 38 H 0.36 7.47 9.05 45.56 0.41 7.89 16 39 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 40 H 0.06 0.98 7.65 -51.93 -0.40 0.58 16 41 H 0.14 1.54 6.30 -52.48 -0.33 1.20 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.14 1.23 7.88 -52.49 -0.41 0.82 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -33.13 375.03 -9.12 -42.24 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.80 Total: 5.32 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -3.46 Total: -5.02 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 2.24 Total: -47.36 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.72 Total: -17.26 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.13 -9.12 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590679830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.732 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds