Wall clock time and date at job start Tue Mar 31 2020 18:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47259 * 2 1 4 4 C 1.36942 * 120.00045 * 275.31636 * 3 2 1 5 5 H 1.07998 * 119.99662 * 37.57494 * 4 3 2 6 6 C 1.38806 * 119.99731 * 217.57375 * 4 3 2 7 7 N 1.31621 * 120.00414 * 21.42938 * 6 4 3 8 8 Si 1.86800 * 119.99942 * 201.42231 * 6 4 3 9 9 H 1.48499 * 109.47018 * 90.00606 * 8 6 4 10 10 H 1.48503 * 109.47066 * 210.00058 * 8 6 4 11 11 H 1.48491 * 109.47183 * 330.00381 * 8 6 4 12 12 C 1.46504 * 119.99996 * 95.30951 * 3 2 1 13 13 C 1.52999 * 109.47185 * 270.00192 * 12 3 2 14 14 N 1.46495 * 109.46886 * 179.97438 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27815 * 14 13 12 16 16 O 1.21579 * 119.99695 * 359.72389 * 15 14 13 17 17 C 1.47694 * 120.00199 * 179.72976 * 15 14 13 18 18 C 1.40664 * 126.19520 * 179.71159 * 17 15 14 19 19 C 1.37807 * 105.16624 * 179.90255 * 18 17 15 20 20 C 1.46580 * 133.65754 * 180.02562 * 19 18 17 21 21 O 1.21763 * 120.78217 * 0.33315 * 20 19 18 22 22 N 1.35171 * 118.43725 * 180.30541 * 20 19 18 23 23 H 0.96992 * 119.99859 * 180.02562 * 22 20 19 24 24 C 1.38011 * 119.99539 * 0.02562 * 22 20 19 25 25 C 1.50704 * 118.97741 * 179.97438 * 24 22 20 26 26 C 1.32715 * 122.04869 * 0.02562 * 24 22 20 27 27 N 1.37298 * 107.07607 * 0.35406 * 19 18 17 28 28 N 1.28653 * 109.20513 * 359.76861 * 27 19 18 29 29 H 1.09001 * 109.46893 * 299.99572 * 1 2 3 30 30 H 1.09000 * 109.47647 * 60.00045 * 1 2 3 31 31 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46893 * 240.00428 * 2 1 3 33 33 H 1.08994 * 109.47236 * 120.00089 * 2 1 3 34 34 H 0.96993 * 120.00508 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46603 * 150.00299 * 12 3 2 36 36 H 1.09000 * 109.46677 * 30.00674 * 12 3 2 37 37 H 1.08999 * 109.46874 * 60.00152 * 13 12 3 38 38 H 1.08995 * 109.47233 * 300.00362 * 13 12 3 39 39 H 0.97003 * 120.00242 * 0.02562 * 14 13 12 40 40 H 1.07997 * 127.41474 * 359.97438 * 18 17 15 41 41 H 1.09003 * 109.46803 * 0.02562 * 25 24 22 42 42 H 1.09007 * 109.46869 * 119.99618 * 25 24 22 43 43 H 1.08995 * 109.47575 * 239.99537 * 25 24 22 44 44 H 1.08005 * 119.33051 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4103 1.9278 -1.9626 6 6 3.2110 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6492 8 14 3.0991 4.2795 -2.6585 9 1 2.5374 5.5069 -2.0394 10 1 4.4547 4.5697 -3.1909 11 1 2.2164 3.8358 -3.7670 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 7 1.4974 3.3891 3.1002 15 6 0.5635 4.0714 3.7922 16 8 -0.5721 4.1509 3.3653 17 6 0.9197 4.7226 5.0691 18 6 0.0551 5.4682 5.8909 19 6 0.8286 5.8682 6.9589 20 6 0.5599 6.6605 8.1625 21 8 -0.5506 7.1121 8.3762 22 7 1.5736 6.8776 9.0299 23 1 1.4208 7.3984 9.8337 24 6 2.8258 6.3580 8.7716 25 6 3.9395 6.6146 9.7540 26 6 3.0800 5.6404 7.6846 27 7 2.0924 5.3745 6.7487 28 7 2.1109 4.7151 5.6442 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.0490 3.4027 -0.7836 35 1 3.1617 2.7641 1.0859 36 1 2.7256 1.2832 1.9721 37 1 0.3542 2.0068 2.0140 38 1 0.7903 3.4875 1.1278 39 1 2.4035 3.3260 3.4406 40 1 -0.9902 5.6804 5.7218 41 1 3.5625 7.2152 10.5818 42 1 4.3134 5.6645 10.1356 43 1 4.7479 7.1492 9.2553 44 1 4.0763 5.2545 7.5264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663407234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:57 Heat of formation + Delta-G solvation = 50.734556 kcal Electronic energy + Delta-G solvation = -27805.045481 eV Core-core repulsion = 23760.395992 eV Total energy + Delta-G solvation = -4044.649489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.42159 -40.40798 -39.00828 -37.84102 -36.28006 -34.10549 -33.60288 -32.18288 -31.86202 -31.22753 -29.70341 -28.11000 -27.07439 -24.67380 -24.32403 -23.54092 -22.65209 -21.52002 -20.44230 -20.15775 -19.24712 -18.95069 -17.66518 -17.00093 -16.71564 -16.34975 -15.53703 -15.37136 -15.17589 -15.02413 -14.61170 -14.50558 -14.24947 -14.03875 -13.80509 -13.68439 -13.33628 -13.31179 -13.18567 -12.65723 -12.36048 -12.07787 -11.98750 -11.53109 -11.42976 -11.10056 -10.81021 -10.75891 -10.61804 -10.51719 -10.47132 -10.11204 -9.95501 -9.84873 -9.66096 -9.64858 -8.59046 -8.46061 -8.29236 -6.60875 -5.81438 -3.40432 0.45560 0.90639 1.78916 1.87029 2.16903 2.82224 3.34363 3.39427 3.45211 3.47491 3.53224 3.66932 3.82543 4.03164 4.41928 4.49181 4.77425 4.80789 4.91331 4.98082 5.18643 5.21568 5.30300 5.40296 5.57695 5.87880 5.98365 6.01957 6.07141 6.15698 6.19368 6.41052 6.43397 6.48507 6.53670 6.71404 6.85284 6.94216 7.03816 7.19317 7.21815 7.47033 7.57929 7.82724 7.94223 8.48577 8.51967 9.16558 9.78529 10.36518 11.18567 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.002495 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.698090 B =11219.757540 C =11766.017754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.260 4.260 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.276 1.276 12 C 0.137 3.863 13 C 0.096 3.904 14 N -0.701 5.701 15 C 0.596 3.404 16 O -0.532 6.532 17 C 0.000 4.000 18 C -0.083 4.083 19 C -0.077 4.077 20 C 0.586 3.414 21 O -0.501 6.501 22 N -0.640 5.640 23 H 0.423 0.577 24 C 0.118 3.882 25 C -0.110 4.110 26 C -0.009 4.009 27 N -0.195 5.195 28 N -0.231 5.231 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.030 0.970 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.404 0.596 40 H 0.179 0.821 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 6.507 23.766 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.010 3.990 13 C -0.029 4.029 14 N -0.351 5.351 15 C 0.378 3.622 16 O -0.408 6.408 17 C -0.155 4.155 18 C -0.113 4.113 19 C -0.199 4.199 20 C 0.376 3.624 21 O -0.374 6.374 22 N -0.283 5.283 23 H 0.263 0.737 24 C 0.014 3.986 25 C -0.168 4.168 26 C -0.127 4.127 27 N 0.021 4.979 28 N -0.069 5.069 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.239 0.761 40 H 0.197 0.803 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.671 6.363 23.210 24.124 hybrid contribution -0.361 1.287 0.010 1.337 sum 1.310 7.650 23.220 24.483 Atomic orbital electron populations 1.22395 0.99894 0.99093 1.01445 1.20879 0.91777 0.86952 0.98897 1.43620 1.76042 1.08293 1.02067 1.19033 1.04759 1.21255 0.93964 0.92018 1.25188 0.94166 1.01200 0.98149 1.69992 1.03147 1.37217 1.42532 0.86387 0.76897 0.82634 0.81463 1.21193 1.21740 1.20158 1.21061 0.94500 0.97023 0.86439 1.22573 1.01357 0.96661 0.82298 1.46008 1.13112 1.52007 1.24011 1.16747 0.85297 0.78776 0.81344 1.90812 1.20020 1.61367 1.68582 1.22224 0.89734 1.04661 0.98910 1.21799 1.01272 0.97594 0.90628 1.21709 0.87992 1.09473 1.00775 1.17031 0.84106 0.79644 0.81658 1.90968 1.21308 1.50083 1.74992 1.43545 1.08300 1.51224 1.25227 0.73746 1.19758 0.86987 0.95887 0.95958 1.20914 0.94821 1.04375 0.96693 1.20547 0.94527 1.08161 0.89435 1.42969 1.07778 1.33026 1.14127 1.73699 1.23546 1.13862 0.95771 0.93613 0.93080 0.94465 0.93579 0.94715 0.93529 0.88312 0.95180 0.92608 0.91361 0.76128 0.80346 0.90081 0.88730 0.88706 0.79682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 10.21 37.16 0.38 -2.77 16 2 C 0.14 2.97 6.44 -4.05 -0.03 2.94 16 3 N -0.58 -14.15 2.43 -173.24 -0.42 -14.57 16 4 C -0.26 -7.01 9.45 -15.06 -0.14 -7.15 16 5 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -24.81 11.47 55.49 0.64 -24.18 16 8 Si 0.90 21.56 29.60 -169.99 -5.03 16.53 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.14 3.09 5.45 -4.04 -0.02 3.07 16 13 C 0.10 1.99 6.00 -4.05 -0.02 1.96 16 14 N -0.70 -12.69 5.55 -61.30 -0.34 -13.03 16 15 C 0.60 10.98 7.82 -12.40 -0.10 10.89 16 16 O -0.53 -11.34 16.91 5.30 0.09 -11.25 16 17 C 0.00 0.00 7.09 -82.90 -0.59 -0.58 16 18 C -0.08 -1.21 10.86 -38.82 -0.42 -1.63 16 19 C -0.08 -1.00 6.97 -82.21 -0.57 -1.57 16 20 C 0.59 6.58 7.96 -12.72 -0.10 6.48 16 21 O -0.50 -7.05 17.99 5.13 0.09 -6.96 16 22 N -0.64 -4.15 5.37 -9.57 -0.05 -4.20 16 23 H 0.42 1.52 8.64 -40.82 -0.35 1.17 16 24 C 0.12 0.57 6.76 -81.69 -0.55 0.02 16 25 C -0.11 -0.06 10.06 36.01 0.36 0.31 16 26 C -0.01 -0.07 10.68 -16.36 -0.17 -0.24 16 27 N -0.19 -2.31 3.65 -9.38 -0.03 -2.34 16 28 N -0.23 -3.28 11.80 33.32 0.39 -2.89 16 29 H 0.04 0.86 6.64 -51.93 -0.34 0.51 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 34 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.10 2.50 5.52 -51.93 -0.29 2.21 16 36 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 37 H 0.06 1.16 6.64 -51.93 -0.34 0.82 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.40 6.61 8.18 -40.82 -0.33 6.27 16 40 H 0.18 2.43 8.06 -52.49 -0.42 2.01 16 41 H 0.08 -0.06 7.89 -51.93 -0.41 -0.47 16 42 H 0.09 -0.04 8.14 -51.92 -0.42 -0.46 16 43 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 44 H 0.19 0.82 8.03 -52.48 -0.42 0.40 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -34.84 377.10 -6.87 -41.71 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.82 Total: 3.51 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: -2.07 Total: 11.99 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.18 Total: -61.20 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.18 Total: -18.21 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.84 -6.87 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663407234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.441 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds