Wall clock time and date at job start Tue Mar 31 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46964 * 2 1 4 4 C 1.53003 * 109.46851 * 119.99478 * 2 1 3 5 5 C 1.53007 * 109.46714 * 184.99961 * 4 2 1 6 6 N 1.46498 * 109.46796 * 180.02562 * 5 4 2 7 7 C 1.36936 * 119.99754 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00427 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99661 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00110 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99654 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47039 * 89.99935 * 11 9 7 13 13 H 1.48499 * 109.46832 * 209.99626 * 11 9 7 14 14 H 1.48496 * 109.46969 * 329.99933 * 11 9 7 15 15 N 1.46497 * 109.47449 * 239.99891 * 2 1 3 16 16 C 1.34774 * 119.99843 * 84.99528 * 15 2 1 17 17 O 1.21493 * 120.00111 * 0.02562 * 16 15 2 18 18 C 1.48335 * 119.99776 * 180.02562 * 16 15 2 19 19 C 1.42275 * 126.93794 * 180.27430 * 18 16 15 20 20 C 1.35317 * 103.91995 * 180.14804 * 19 18 16 21 21 C 1.50695 * 126.66398 * 179.91025 * 20 19 18 22 22 N 1.46506 * 109.47276 * 89.71339 * 21 20 19 23 23 C 1.34948 * 126.03813 * 124.71284 * 22 21 20 24 24 C 1.35318 * 107.74290 * 179.84379 * 23 22 21 25 25 C 1.39870 * 107.92236 * 0.42279 * 24 23 22 26 26 N 1.30841 * 108.19742 * 359.73723 * 25 24 23 27 27 O 1.34014 * 106.66943 * 359.64778 * 20 19 18 28 28 N 1.20907 * 111.84586 * 0.24364 * 27 20 19 29 29 H 1.09000 * 109.47440 * 300.00272 * 1 2 3 30 30 H 1.08998 * 109.47560 * 60.00294 * 1 2 3 31 31 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47443 * 305.00421 * 4 2 1 33 33 H 1.08997 * 109.46781 * 65.00855 * 4 2 1 34 34 H 1.08992 * 109.47541 * 300.00400 * 5 4 2 35 35 H 1.09001 * 109.46584 * 60.00412 * 5 4 2 36 36 H 0.97004 * 119.99934 * 0.02562 * 6 5 4 37 37 H 0.97005 * 120.00034 * 180.02562 * 10 9 7 38 38 H 0.96998 * 119.99620 * 265.00069 * 15 2 1 39 39 H 1.07999 * 128.04018 * 0.07860 * 19 18 16 40 40 H 1.08997 * 109.47434 * 329.71057 * 21 20 19 41 41 H 1.08998 * 109.47220 * 209.71083 * 21 20 19 42 42 H 1.08002 * 126.12338 * 359.97438 * 23 22 21 43 43 H 1.08000 * 126.03532 * 180.16268 * 24 23 22 44 44 H 1.07995 * 125.89975 * 179.76315 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0532 -1.3042 2.5097 7 6 5.3952 -1.3402 2.7795 8 1 6.0936 -0.8595 2.1107 9 6 5.8579 -1.9954 3.9125 10 7 5.0068 -2.5816 4.7274 11 14 7.6888 -2.0451 4.2803 12 1 8.0587 -0.8713 5.1113 13 1 8.0121 -3.2940 5.0159 14 1 8.4507 -2.0095 3.0062 15 7 2.0184 -0.6906 -1.1961 16 6 2.1470 -0.0183 -2.3571 17 8 1.8584 1.1606 -2.4116 18 6 2.6410 -0.7177 -3.5683 19 6 2.8376 -0.1550 -4.8602 20 6 3.2902 -1.1924 -5.6017 21 6 3.6612 -1.1605 -7.0619 22 7 5.0791 -0.8177 -7.1982 23 6 6.0109 -1.5398 -7.8550 24 6 7.1900 -0.8840 -7.7505 25 6 6.9732 0.2737 -6.9961 26 7 5.7081 0.3144 -6.6645 27 8 3.3499 -2.2524 -4.7839 28 7 2.9886 -1.9770 -3.6634 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -0.2617 2.1370 33 1 1.7517 -1.7714 1.2057 34 1 3.9995 -1.0727 0.4261 35 1 3.8531 0.4371 1.3574 36 1 3.4258 -1.7362 3.1103 37 1 5.3302 -3.0392 5.5193 38 1 2.2491 -1.6317 -1.1525 39 1 2.6646 0.8633 -5.1759 40 1 3.0558 -0.4129 -7.5744 41 1 3.4802 -2.1400 -7.5043 42 1 5.8448 -2.4727 -8.3731 43 1 8.1327 -1.2009 -8.1713 44 1 7.7207 1.0074 -6.7331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699147878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:41 Heat of formation + Delta-G solvation = 119.598575 kcal Electronic energy + Delta-G solvation = -27348.621024 eV Core-core repulsion = 23306.957703 eV Total energy + Delta-G solvation = -4041.663321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.42633 -41.44556 -39.83411 -36.64080 -35.17953 -34.40718 -34.19360 -32.06182 -31.53096 -30.58798 -30.29402 -27.89371 -27.21724 -25.29823 -23.91563 -23.12685 -21.83914 -21.44818 -21.42455 -20.69583 -20.20196 -18.39229 -18.14190 -17.27199 -17.21073 -16.92782 -16.18548 -15.79011 -15.09246 -14.87026 -14.59909 -14.46117 -14.17971 -13.97838 -13.87430 -13.64941 -13.49307 -13.34016 -13.21495 -12.85656 -12.75834 -12.47977 -11.95257 -11.84356 -11.23067 -11.03935 -11.01508 -10.81985 -10.73247 -10.65164 -10.58853 -10.29473 -10.05200 -10.04010 -9.85117 -9.69659 -9.13763 -9.00870 -8.85825 -6.91923 -5.75872 -3.04604 0.71647 1.21763 1.51178 2.24124 2.44929 2.54394 2.84858 3.05607 3.44902 3.49810 3.51814 3.69187 3.98156 4.07867 4.42496 4.56920 4.58751 4.60042 4.73867 4.86149 4.96747 5.03963 5.18827 5.20886 5.31214 5.41068 5.52111 5.55439 5.66847 5.68989 5.71832 5.89519 5.97241 6.20883 6.24780 6.27621 6.31892 6.41788 6.54520 6.80969 6.84589 7.31724 7.33511 7.68880 7.71536 8.01263 8.43151 9.54295 10.11415 10.46532 11.47118 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.002654 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.313062 B =10546.336204 C =12786.475011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.093 0.907 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.701 5.701 16 C 0.599 3.401 17 O -0.524 6.524 18 C -0.026 4.026 19 C -0.134 4.134 20 C -0.071 4.071 21 C 0.225 3.775 22 N -0.382 5.382 23 C 0.057 3.943 24 C -0.270 4.270 25 C 0.050 3.950 26 N -0.287 5.287 27 O 0.133 5.867 28 N -0.317 5.317 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.017 0.983 35 H 0.019 0.981 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.408 0.592 39 H 0.184 0.816 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.177 0.823 43 H 0.149 0.851 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 1.611 -29.483 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.173 4.173 5 C 0.025 3.975 6 N -0.377 5.377 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.352 5.352 16 C 0.382 3.618 17 O -0.399 6.399 18 C -0.185 4.185 19 C -0.156 4.156 20 C -0.135 4.135 21 C 0.103 3.897 22 N -0.165 5.165 23 C -0.088 4.088 24 C -0.299 4.299 25 C -0.137 4.137 26 N -0.107 5.107 27 O 0.053 5.947 28 N -0.014 5.014 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.243 0.757 39 H 0.201 0.799 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.194 0.806 43 H 0.167 0.833 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.299 2.122 -27.934 28.950 hybrid contribution 1.627 -0.496 -0.236 1.717 sum -5.672 1.626 -28.170 28.782 Atomic orbital electron populations 1.22170 0.95025 1.02230 1.02531 1.21110 0.93844 0.97789 0.83249 0.88935 1.22079 0.98164 1.00909 0.96192 1.20639 0.90302 0.95695 0.90824 1.42349 1.05414 1.64918 1.25063 1.19236 0.83827 1.28450 1.05531 0.91273 1.24742 0.97768 1.00837 0.97665 1.69658 1.32811 1.40709 1.15145 0.86179 0.85053 0.77047 0.77890 1.21654 1.21709 1.20755 1.46016 1.65496 1.14631 1.09073 1.16810 0.77846 0.85761 0.81358 1.90796 1.50288 1.14493 1.84314 1.23610 1.06412 0.90976 0.97507 1.22477 1.01282 1.01348 0.90538 1.24204 1.05872 0.87428 0.96002 1.19884 0.78284 1.04541 0.86985 1.48682 1.07680 1.18129 1.42059 1.22632 0.89221 0.98415 0.98493 1.21587 0.99065 0.98797 1.10470 1.24010 0.93920 0.98570 0.97220 1.77478 1.08365 1.04608 1.20253 1.84799 1.61127 1.34874 1.13893 1.74216 1.11773 1.16568 0.98882 0.91126 0.92329 0.92369 0.89857 0.91215 0.96499 0.96326 0.78289 0.93512 0.75652 0.79883 0.85982 0.85857 0.80581 0.83293 0.79841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.48 37.16 0.35 -1.57 16 2 C 0.14 2.05 2.57 -67.93 -0.17 1.87 16 3 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.14 -2.17 4.87 -26.73 -0.13 -2.30 16 5 C 0.15 3.22 6.15 -4.04 -0.02 3.19 16 6 N -0.73 -19.24 5.60 -59.91 -0.34 -19.57 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 11 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 N -0.70 -10.05 4.53 -54.60 -0.25 -10.30 16 16 C 0.60 9.11 7.81 -12.11 -0.09 9.02 16 17 O -0.52 -9.10 16.61 5.37 0.09 -9.01 16 18 C -0.03 -0.35 7.19 -82.52 -0.59 -0.95 16 19 C -0.13 -1.45 10.92 -39.07 -0.43 -1.88 16 20 C -0.07 -0.63 6.91 -35.35 -0.24 -0.87 16 21 C 0.23 1.11 7.07 -5.19 -0.04 1.07 16 22 N -0.38 -3.02 3.67 -62.55 -0.23 -3.24 16 23 C 0.06 0.36 11.45 -17.22 -0.20 0.16 16 24 C -0.27 -1.96 10.80 -40.01 -0.43 -2.39 16 25 C 0.05 0.45 12.03 -17.36 -0.21 0.24 16 26 N -0.29 -3.11 12.41 30.62 0.38 -2.73 16 27 O 0.13 1.46 11.18 17.25 0.19 1.65 16 28 N -0.32 -4.19 11.84 33.30 0.39 -3.80 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.37 7.75 -51.93 -0.40 -0.03 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.38 10.41 7.67 -40.82 -0.31 10.09 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.41 5.66 8.36 -40.82 -0.34 5.32 16 39 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.12 0.16 8.07 -51.93 -0.42 -0.26 16 42 H 0.18 0.42 8.06 -52.49 -0.42 -0.01 16 43 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -37.27 387.31 -6.74 -44.01 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.07 Total: 9.32 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.46 Total: -2.05 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: 0.69 Total: -67.77 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.28 Total: -7.36 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.27 -6.74 -44.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699147878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.606 kcal (2) G-P(sol) polarization free energy of solvation -37.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds