Wall clock time and date at job start Tue Mar 31 2020 17:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46964 * 2 1 4 4 C 1.53003 * 109.46851 * 119.99478 * 2 1 3 5 5 C 1.53007 * 109.46714 * 184.99961 * 4 2 1 6 6 N 1.46498 * 109.46796 * 180.02562 * 5 4 2 7 7 C 1.36936 * 119.99754 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00427 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99661 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00110 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99654 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47039 * 89.99935 * 11 9 7 13 13 H 1.48499 * 109.46832 * 209.99626 * 11 9 7 14 14 H 1.48496 * 109.46969 * 329.99933 * 11 9 7 15 15 N 1.46497 * 109.47449 * 239.99891 * 2 1 3 16 16 C 1.34774 * 119.99843 * 84.99528 * 15 2 1 17 17 O 1.21493 * 120.00111 * 0.02562 * 16 15 2 18 18 C 1.48335 * 119.99776 * 180.02562 * 16 15 2 19 19 C 1.42275 * 126.93794 * 180.27430 * 18 16 15 20 20 C 1.35317 * 103.91995 * 180.14804 * 19 18 16 21 21 C 1.50695 * 126.66398 * 179.91025 * 20 19 18 22 22 N 1.46506 * 109.47276 * 89.71339 * 21 20 19 23 23 C 1.34948 * 126.03813 * 124.71284 * 22 21 20 24 24 C 1.35318 * 107.74290 * 179.84379 * 23 22 21 25 25 C 1.39870 * 107.92236 * 0.42279 * 24 23 22 26 26 N 1.30841 * 108.19742 * 359.73723 * 25 24 23 27 27 O 1.34014 * 106.66943 * 359.64778 * 20 19 18 28 28 N 1.20907 * 111.84586 * 0.24364 * 27 20 19 29 29 H 1.09000 * 109.47440 * 300.00272 * 1 2 3 30 30 H 1.08998 * 109.47560 * 60.00294 * 1 2 3 31 31 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47443 * 305.00421 * 4 2 1 33 33 H 1.08997 * 109.46781 * 65.00855 * 4 2 1 34 34 H 1.08992 * 109.47541 * 300.00400 * 5 4 2 35 35 H 1.09001 * 109.46584 * 60.00412 * 5 4 2 36 36 H 0.97004 * 119.99934 * 0.02562 * 6 5 4 37 37 H 0.97005 * 120.00034 * 180.02562 * 10 9 7 38 38 H 0.96998 * 119.99620 * 265.00069 * 15 2 1 39 39 H 1.07999 * 128.04018 * 0.07860 * 19 18 16 40 40 H 1.08997 * 109.47434 * 329.71057 * 21 20 19 41 41 H 1.08998 * 109.47220 * 209.71083 * 21 20 19 42 42 H 1.08002 * 126.12338 * 359.97438 * 23 22 21 43 43 H 1.08000 * 126.03532 * 180.16268 * 24 23 22 44 44 H 1.07995 * 125.89975 * 179.76315 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0532 -1.3042 2.5097 7 6 5.3952 -1.3402 2.7795 8 1 6.0936 -0.8595 2.1107 9 6 5.8579 -1.9954 3.9125 10 7 5.0068 -2.5816 4.7274 11 14 7.6888 -2.0451 4.2803 12 1 8.0587 -0.8713 5.1113 13 1 8.0121 -3.2940 5.0159 14 1 8.4507 -2.0095 3.0062 15 7 2.0184 -0.6906 -1.1961 16 6 2.1470 -0.0183 -2.3571 17 8 1.8584 1.1606 -2.4116 18 6 2.6410 -0.7177 -3.5683 19 6 2.8376 -0.1550 -4.8602 20 6 3.2902 -1.1924 -5.6017 21 6 3.6612 -1.1605 -7.0619 22 7 5.0791 -0.8177 -7.1982 23 6 6.0109 -1.5398 -7.8550 24 6 7.1900 -0.8840 -7.7505 25 6 6.9732 0.2737 -6.9961 26 7 5.7081 0.3144 -6.6645 27 8 3.3499 -2.2524 -4.7839 28 7 2.9886 -1.9770 -3.6634 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -0.2617 2.1370 33 1 1.7517 -1.7714 1.2057 34 1 3.9995 -1.0727 0.4261 35 1 3.8531 0.4371 1.3574 36 1 3.4258 -1.7362 3.1103 37 1 5.3302 -3.0392 5.5193 38 1 2.2491 -1.6317 -1.1525 39 1 2.6646 0.8633 -5.1759 40 1 3.0558 -0.4129 -7.5744 41 1 3.4802 -2.1400 -7.5043 42 1 5.8448 -2.4727 -8.3731 43 1 8.1327 -1.2009 -8.1713 44 1 7.7207 1.0074 -6.7331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699147878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:40 Heat of formation + Delta-G solvation = 92.917718 kcal Electronic energy + Delta-G solvation = -27349.777993 eV Core-core repulsion = 23306.957703 eV Total energy + Delta-G solvation = -4042.820290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.34097 -41.97149 -41.03958 -38.04048 -36.23980 -35.78554 -35.16102 -33.67091 -32.52626 -31.97315 -30.85066 -29.50513 -27.78592 -26.41098 -25.76754 -24.05311 -23.33003 -22.39647 -21.92696 -21.88295 -21.22687 -19.34394 -19.15974 -18.89960 -18.15009 -17.80542 -17.39367 -16.76049 -16.39981 -16.16930 -15.73326 -15.56956 -15.33828 -15.24059 -15.01209 -14.89074 -14.55384 -14.40838 -14.22470 -13.74842 -13.69076 -13.27492 -13.18113 -12.99468 -12.93653 -12.67211 -12.46411 -12.33069 -12.08749 -12.04364 -11.72706 -11.67818 -11.58858 -11.52033 -11.01247 -10.85391 -10.43395 -10.33172 -9.53338 -9.08153 -8.01771 -5.31548 -0.15053 0.34710 0.97340 1.42960 1.44978 1.53639 1.66282 1.74950 1.85944 1.94768 1.99117 2.50503 2.72945 3.25579 3.31392 3.53051 3.66340 3.75899 3.94221 3.98605 4.06686 4.08299 4.16915 4.30527 4.35558 4.38328 4.47112 4.53429 4.67330 4.71450 4.73768 4.75273 4.89391 4.94568 5.07652 5.18424 5.18590 5.24098 5.36047 5.41498 5.72399 6.13735 6.16502 6.21105 6.74499 6.77764 6.88881 7.27237 8.00517 8.26239 9.21469 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.002654 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.313062 B =10546.336204 C =12786.475011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.119 4.119 5 C 0.154 3.846 6 N -0.744 5.744 7 C -0.254 4.254 8 H 0.068 0.932 9 C -0.071 4.071 10 N -0.966 5.966 11 Si 0.974 3.026 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.273 1.273 15 N -0.699 5.699 16 C 0.597 3.403 17 O -0.553 6.553 18 C -0.050 4.050 19 C -0.149 4.149 20 C -0.048 4.048 21 C 0.220 3.780 22 N -0.387 5.387 23 C 0.067 3.933 24 C -0.289 4.289 25 C 0.033 3.967 26 N -0.339 5.339 27 O 0.141 5.859 28 N -0.337 5.337 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.377 0.623 37 H 0.254 0.746 38 H 0.410 0.590 39 H 0.190 0.810 40 H 0.146 0.854 41 H 0.170 0.830 42 H 0.220 0.780 43 H 0.166 0.834 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 0.533 -31.551 32.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.157 4.157 5 C 0.027 3.973 6 N -0.387 5.387 7 C -0.386 4.386 8 H 0.086 0.914 9 C -0.263 4.263 10 N -0.616 5.616 11 Si 0.802 3.198 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.198 1.198 15 N -0.350 5.350 16 C 0.381 3.619 17 O -0.430 6.430 18 C -0.208 4.208 19 C -0.172 4.172 20 C -0.112 4.112 21 C 0.099 3.901 22 N -0.171 5.171 23 C -0.077 4.077 24 C -0.318 4.318 25 C -0.153 4.153 26 N -0.160 5.160 27 O 0.059 5.941 28 N -0.034 5.034 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.030 0.970 35 H 0.028 0.972 36 H 0.209 0.791 37 H 0.063 0.937 38 H 0.246 0.754 39 H 0.207 0.793 40 H 0.164 0.836 41 H 0.188 0.812 42 H 0.236 0.764 43 H 0.183 0.817 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.241 1.058 -30.010 30.889 hybrid contribution 1.630 -0.173 0.294 1.665 sum -5.611 0.885 -29.716 30.254 Atomic orbital electron populations 1.22092 0.92707 1.03171 1.03073 1.21036 0.95512 0.96575 0.82361 0.90390 1.21920 0.94454 1.01801 0.97526 1.20739 0.93641 0.94286 0.88629 1.42518 1.04560 1.65281 1.26358 1.19574 0.85233 1.28139 1.05609 0.91433 1.25575 1.02250 1.00869 0.97640 1.69799 1.34691 1.41581 1.15533 0.85140 0.79820 0.76954 0.77846 1.21107 1.21523 1.19813 1.46034 1.65255 1.14670 1.09021 1.17052 0.77327 0.85522 0.81949 1.90766 1.51690 1.15629 1.84894 1.23530 1.07855 0.91580 0.97797 1.22639 1.02385 1.02295 0.89914 1.24852 1.03339 0.85807 0.97175 1.20493 0.77329 1.07976 0.84338 1.48870 1.08724 1.17564 1.41953 1.23340 0.88279 0.99020 0.97107 1.21928 1.00513 0.98546 1.10774 1.24372 0.93889 0.99638 0.97446 1.77401 1.09409 1.06834 1.22361 1.84759 1.60264 1.35498 1.13533 1.74201 1.12569 1.16526 1.00097 0.89617 0.92734 0.91210 0.89066 0.90435 0.97037 0.97200 0.79072 0.93716 0.75382 0.79317 0.83604 0.81231 0.76354 0.81674 0.79062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.48 71.98 0.68 -2.77 16 2 C 0.15 4.21 2.57 44.99 0.12 4.33 16 3 H 0.08 2.46 7.58 -2.39 -0.02 2.44 16 4 C -0.12 -3.78 4.87 30.60 0.15 -3.63 16 5 C 0.15 6.54 6.15 86.38 0.53 7.07 16 6 N -0.74 -39.48 5.60 -343.45 -1.92 -41.41 16 7 C -0.25 -14.90 9.99 84.04 0.84 -14.06 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 9 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 10 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 11 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 15 N -0.70 -20.25 4.53 -444.95 -2.01 -22.26 16 16 C 0.60 18.60 7.81 86.93 0.68 19.28 16 17 O -0.55 -19.75 16.61 -3.69 -0.06 -19.81 16 18 C -0.05 -1.37 7.19 42.96 0.31 -1.06 16 19 C -0.15 -3.19 10.92 22.60 0.25 -2.95 16 20 C -0.05 -0.76 6.91 25.01 0.17 -0.59 16 21 C 0.22 1.44 7.07 85.63 0.61 2.04 16 22 N -0.39 -5.20 3.67 -351.79 -1.29 -6.49 16 23 C 0.07 0.63 11.45 83.54 0.96 1.59 16 24 C -0.29 -3.71 10.80 21.99 0.24 -3.47 16 25 C 0.03 0.58 12.03 85.24 1.03 1.60 16 26 N -0.34 -7.18 12.41 -57.02 -0.71 -7.88 16 27 O 0.14 2.90 11.18 71.90 0.80 3.70 16 28 N -0.34 -8.85 11.84 -49.51 -0.59 -9.43 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.01 0.51 7.75 -2.39 -0.02 0.49 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.38 20.71 7.67 -92.71 -0.71 20.00 16 37 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 38 H 0.41 11.48 8.36 -92.71 -0.78 10.71 16 39 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 40 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.17 -0.45 8.07 -2.39 -0.02 -0.47 16 42 H 0.22 -0.06 8.06 -2.91 -0.02 -0.08 16 43 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -82.15 387.31 3.10 -79.05 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.44 Total: 31.13 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 7.02 Total: 3.66 kcal Atomic # 7 Polarization: -140.92 SS G_CDS: -6.24 Total: -147.16 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.74 Total: -16.11 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -82.15 3.10 -79.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699147878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.968 kcal (2) G-P(sol) polarization free energy of solvation -82.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds