Wall clock time and date at job start Tue Mar 31 2020 17:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47493 * 2 1 4 4 N 1.46503 * 109.47035 * 120.00165 * 2 1 3 5 5 C 1.34775 * 119.99636 * 275.00197 * 4 2 1 6 6 O 1.21279 * 120.00488 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00009 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.47531 * 180.02562 * 7 5 4 9 9 C 1.34249 * 126.49189 * 264.97791 * 8 7 5 10 10 N 1.36815 * 109.92915 * 180.02562 * 9 8 7 11 11 H 0.97001 * 125.06376 * 179.97438 * 10 9 8 12 12 C 1.37815 * 109.86515 * 0.24258 * 10 9 8 13 13 C 1.39091 * 133.39399 * 180.44196 * 12 10 9 14 14 C 1.37717 * 119.95230 * 179.59979 * 13 12 10 15 15 C 1.39024 * 120.65042 * 359.74291 * 14 13 12 16 16 F 1.35097 * 119.83613 * 179.97438 * 15 14 13 17 17 C 1.37794 * 120.33473 * 359.97438 * 15 14 13 18 18 C 1.39678 * 119.62807 * 359.97438 * 17 15 14 19 19 C 1.53003 * 109.47340 * 239.99737 * 2 1 3 20 20 H 1.08998 * 109.46896 * 300.00127 * 19 2 1 21 21 C 1.52998 * 109.47340 * 180.02562 * 19 2 1 22 22 N 1.46503 * 109.46707 * 60.00227 * 19 2 1 23 23 C 1.36940 * 119.99645 * 205.00071 * 22 19 2 24 24 H 1.07998 * 120.00277 * 359.97438 * 23 22 19 25 25 C 1.38809 * 120.00057 * 180.02562 * 23 22 19 26 26 N 1.31617 * 120.00449 * 179.97438 * 25 23 22 27 27 Si 1.86809 * 119.99887 * 359.97438 * 25 23 22 28 28 H 1.48495 * 109.47288 * 89.99788 * 27 25 23 29 29 H 1.48496 * 109.47049 * 210.00497 * 27 25 23 30 30 H 1.48507 * 109.46809 * 329.99796 * 27 25 23 31 31 H 1.09004 * 109.46799 * 60.00591 * 1 2 3 32 32 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47354 * 300.00252 * 1 2 3 34 34 H 0.96993 * 120.00364 * 94.99765 * 4 2 1 35 35 H 1.08995 * 109.47434 * 59.99178 * 7 5 4 36 36 H 1.09004 * 109.46815 * 299.99688 * 7 5 4 37 37 H 1.07992 * 125.03593 * 0.03318 * 9 8 7 38 38 H 1.07997 * 120.02223 * 359.36293 * 13 12 10 39 39 H 1.08002 * 119.67331 * 179.71516 * 14 13 12 40 40 H 1.07994 * 120.18772 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.47605 * 180.02562 * 21 19 2 42 42 H 1.08999 * 109.47278 * 300.00883 * 21 19 2 43 43 H 1.09002 * 109.47240 * 59.99964 * 21 19 2 44 44 H 0.96993 * 120.00364 * 25.00195 * 22 19 2 45 45 H 0.97003 * 120.00140 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1469 -0.0183 2.3571 6 8 1.8589 1.1586 2.4115 7 6 2.6498 -0.7285 3.5875 8 6 2.6997 0.2396 4.7413 9 6 3.7681 0.9443 5.1466 10 7 3.4352 1.7170 6.2254 11 1 4.0418 2.3122 6.6930 12 6 2.1111 1.5191 6.5525 13 6 1.2803 2.0470 7.5352 14 6 -0.0364 1.6502 7.6084 15 6 -0.5499 0.7274 6.7042 16 9 -1.8439 0.3493 6.7915 17 6 0.2544 0.1964 5.7193 18 6 1.5916 0.5907 5.6326 19 6 2.0400 -0.7213 -1.2492 20 1 1.6767 -1.7489 -1.2491 21 6 3.5700 -0.7219 -1.2489 22 7 1.5517 -0.0306 -2.4454 23 6 1.4210 -0.7138 -3.6250 24 1 1.6782 -1.7616 -3.6736 25 6 0.9588 -0.0594 -4.7585 26 7 0.8336 -0.7158 -5.8924 27 14 0.5145 1.7532 -4.6747 28 1 1.7119 2.5716 -4.9934 29 1 -0.5605 2.0452 -5.6566 30 1 0.0388 2.0834 -3.3072 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 2.2490 -1.6318 1.1527 35 1 3.6490 -1.1204 3.3980 36 1 1.9775 -1.5508 3.8325 37 1 4.7455 0.9069 4.6888 38 1 1.6686 2.7647 8.2426 39 1 -0.6763 2.0595 8.3762 40 1 -0.1470 -0.5199 5.0179 41 1 3.9334 -1.2353 -2.1390 42 1 3.9338 0.3056 -1.2485 43 1 3.9330 -1.2359 -0.3589 44 1 1.3211 0.9105 -2.4019 45 1 0.5102 -0.2586 -6.6844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733995364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:34 Heat of formation + Delta-G solvation = -14.947967 kcal Electronic energy + Delta-G solvation = -27875.074974 eV Core-core repulsion = 23807.657316 eV Total energy + Delta-G solvation = -4067.417659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.92004 -41.58036 -39.58707 -36.99401 -36.75087 -33.97365 -33.35358 -31.82628 -30.72352 -29.58982 -29.18531 -28.88738 -27.20003 -23.89219 -23.38325 -22.73060 -22.19114 -20.64143 -20.21459 -19.49404 -18.32349 -17.82414 -17.45521 -16.89762 -16.51016 -15.77071 -15.67364 -15.49752 -15.02794 -14.57490 -14.50040 -14.20761 -14.02222 -13.76248 -13.47278 -13.34738 -13.18401 -13.02831 -12.89835 -12.70082 -12.49202 -12.20189 -11.93205 -11.74272 -11.54226 -11.33635 -11.09384 -11.05579 -10.90740 -10.76053 -10.28779 -10.04984 -9.92863 -9.65265 -9.55649 -9.03666 -8.77354 -8.41005 -7.93246 -7.30306 -5.78611 -3.14770 0.71967 1.16724 2.30083 2.78682 2.81652 3.34846 3.38512 3.42501 3.46634 3.56405 4.06963 4.33196 4.51170 4.58570 4.62653 4.79040 4.93457 4.96513 5.07082 5.21989 5.28881 5.33835 5.40729 5.44239 5.49698 5.53793 5.66470 5.75249 5.75596 5.94966 6.00826 6.02292 6.14034 6.27710 6.31034 6.36435 6.41092 6.43401 6.56621 6.70782 6.80686 6.85948 6.93954 7.18887 7.70892 7.95948 8.39676 8.43253 9.17699 9.90408 10.09407 11.39422 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.018169 B = 0.002434 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.740442 B =11500.985682 C =12154.535841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.134 3.866 3 H 0.082 0.918 4 N -0.720 5.720 5 C 0.510 3.490 6 O -0.533 6.533 7 C -0.067 4.067 8 C -0.149 4.149 9 C 0.073 3.927 10 N -0.592 5.592 11 H 0.417 0.583 12 C 0.086 3.914 13 C -0.100 4.100 14 C -0.134 4.134 15 C 0.069 3.931 16 F -0.143 7.143 17 C -0.102 4.102 18 C -0.064 4.064 19 C 0.174 3.826 20 H 0.059 0.941 21 C -0.164 4.164 22 N -0.743 5.743 23 C -0.242 4.242 24 H 0.091 0.909 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.881 3.119 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.275 1.275 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.398 0.602 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.173 0.827 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.039 0.961 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 1.300 30.179 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 H 0.100 0.900 4 N -0.372 5.372 5 C 0.295 3.705 6 O -0.409 6.409 7 C -0.108 4.108 8 C -0.157 4.157 9 C -0.054 4.054 10 N -0.195 5.195 11 H 0.254 0.746 12 C -0.021 4.021 13 C -0.121 4.121 14 C -0.154 4.154 15 C 0.049 3.951 16 F -0.122 7.122 17 C -0.121 4.121 18 C -0.069 4.069 19 C 0.064 3.936 20 H 0.077 0.923 21 C -0.224 4.224 22 N -0.386 5.386 23 C -0.372 4.372 24 H 0.109 0.891 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.202 1.202 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.232 0.768 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.190 0.810 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.883 2.045 30.055 30.694 hybrid contribution -0.151 1.116 -0.029 1.127 sum 5.731 3.161 30.026 30.731 Atomic orbital electron populations 1.22063 0.95129 1.02054 1.02010 1.21300 0.94334 0.97479 0.84003 0.90015 1.46059 1.67443 1.13950 1.09741 1.20595 0.78051 0.87583 0.84273 1.90713 1.49377 1.16025 1.84778 1.19973 1.03593 0.97144 0.90088 1.19507 0.92083 1.04625 0.99451 1.21610 0.99820 0.93921 0.90010 1.41666 1.09163 1.39983 1.28665 0.74557 1.18212 0.85067 1.00183 0.98626 1.19789 0.92278 1.01711 0.98311 1.20720 0.95550 0.98956 1.00166 1.17280 0.79051 0.99923 0.98834 1.91484 1.34370 1.90369 1.95979 1.20402 0.92229 1.01372 0.98131 1.18684 0.92927 0.98750 0.96495 1.20360 0.92253 0.95859 0.85172 0.92323 1.22406 0.98579 1.01052 1.00343 1.42661 1.79772 1.09474 1.06727 1.19012 1.37210 0.95585 0.85346 0.89147 1.24646 1.01303 0.97458 0.95546 1.69694 1.52536 1.35584 1.00248 0.86598 0.78189 0.86850 0.77196 1.21098 1.21732 1.20157 0.90886 0.92649 0.93256 0.76803 0.88057 0.88209 0.81011 0.85312 0.84563 0.84923 0.92219 0.93610 0.94185 0.80486 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.33 37.16 0.35 -2.22 16 2 C 0.13 2.14 2.21 -67.93 -0.15 1.99 16 3 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 4 N -0.72 -8.85 4.38 -53.81 -0.24 -9.09 16 5 C 0.51 6.55 7.79 -10.99 -0.09 6.46 16 6 O -0.53 -9.26 15.70 5.56 0.09 -9.18 16 7 C -0.07 -0.59 6.23 -29.04 -0.18 -0.77 16 8 C -0.15 -1.53 4.81 -102.71 -0.49 -2.02 16 9 C 0.07 0.59 11.73 -16.73 -0.20 0.40 16 10 N -0.59 -4.43 6.07 -10.64 -0.06 -4.50 16 11 H 0.42 1.72 8.96 -40.82 -0.37 1.36 16 12 C 0.09 0.85 7.27 -83.95 -0.61 0.24 16 13 C -0.10 -0.84 10.06 -39.46 -0.40 -1.24 16 14 C -0.13 -1.24 9.99 -39.48 -0.39 -1.63 16 15 C 0.07 0.79 7.29 -39.45 -0.29 0.50 16 16 F -0.14 -1.73 17.26 2.25 0.04 -1.69 16 17 C -0.10 -1.19 10.07 -39.21 -0.39 -1.59 16 18 C -0.06 -0.73 6.35 -105.13 -0.67 -1.40 16 19 C 0.17 3.12 2.52 -67.93 -0.17 2.95 16 20 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 21 C -0.16 -2.69 9.33 37.16 0.35 -2.34 16 22 N -0.74 -16.93 4.23 -53.42 -0.23 -17.16 16 23 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 24 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 27 Si 0.88 22.07 27.74 -169.99 -4.71 17.36 16 28 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 31 H 0.07 1.36 7.45 -51.93 -0.39 0.97 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 3.75 8.39 -40.82 -0.34 3.41 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.04 0.52 7.44 -51.93 -0.39 0.13 16 44 H 0.36 8.33 5.45 -40.82 -0.22 8.11 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -35.51 381.77 -8.51 -44.02 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.34 Total: 9.97 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -3.59 Total: -7.33 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.25 Total: -58.90 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.51 -8.51 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733995364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.076 kcal (2) G-P(sol) polarization free energy of solvation -35.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds