Wall clock time and date at job start Tue Mar 31 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00438 * 2 1 4 4 C 1.53000 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46730 * 179.97438 * 4 3 2 6 6 N 1.46507 * 109.46845 * 179.97438 * 5 4 3 7 7 C 1.34266 * 125.75032 * 125.00463 * 6 5 4 8 8 C 1.38055 * 107.41406 * 180.02562 * 7 6 5 9 9 C 1.47414 * 126.41363 * 179.97438 * 8 7 6 10 10 O 1.21616 * 120.00075 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99450 * 180.02562 * 9 8 7 12 12 C 1.40118 * 119.99984 * 179.97438 * 11 9 8 13 13 C 1.40421 * 125.96849 * 359.71353 * 12 11 9 14 14 C 1.35244 * 107.86166 * 179.86621 * 13 12 11 15 15 N 1.34965 * 107.86412 * 0.38649 * 14 13 12 16 16 C 1.46496 * 125.97534 * 179.75070 * 15 14 13 17 17 C 1.50693 * 109.47449 * 124.98066 * 16 15 14 18 18 H 1.08002 * 119.99598 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00406 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99899 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00118 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47210 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47064 * 119.99671 * 21 19 17 24 24 H 1.48499 * 109.47191 * 239.99799 * 21 19 17 25 25 N 1.31221 * 125.97694 * 180.02562 * 12 11 9 26 26 C 1.41288 * 107.16609 * 359.97438 * 8 7 6 27 27 N 1.30445 * 108.02917 * 0.02562 * 26 8 7 28 28 H 1.09005 * 109.46750 * 299.99849 * 1 2 3 29 29 H 1.08999 * 109.47167 * 59.99270 * 1 2 3 30 30 H 1.09000 * 109.47444 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46901 * 60.00149 * 3 2 1 32 32 H 1.09002 * 109.46886 * 300.00330 * 3 2 1 33 33 H 1.09002 * 109.46732 * 60.00371 * 4 3 2 34 34 H 1.08996 * 109.46992 * 299.99860 * 4 3 2 35 35 H 1.09002 * 109.47093 * 60.00736 * 5 4 3 36 36 H 1.08995 * 109.47831 * 300.00054 * 5 4 3 37 37 H 1.08005 * 126.29329 * 0.26004 * 7 6 5 38 38 H 0.97000 * 120.00559 * 359.97438 * 11 9 8 39 39 H 1.07995 * 126.07075 * 359.97438 * 13 12 11 40 40 H 1.08006 * 126.06439 * 180.14353 * 14 13 12 41 41 H 1.09004 * 109.47365 * 244.98503 * 16 15 14 42 42 H 1.09008 * 109.47392 * 4.97920 * 16 15 14 43 43 H 0.97005 * 119.99909 * 180.02562 * 20 19 17 44 44 H 1.08008 * 125.98427 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5822 -0.0013 6 7 5.6183 2.4664 -0.0013 7 6 6.4497 3.0272 -0.8941 8 6 7.7363 2.6749 -0.5386 9 6 8.9749 3.0654 -1.2361 10 8 8.9188 3.7658 -2.2288 11 7 10.1693 2.6453 -0.7743 12 6 11.3466 3.0160 -1.4376 13 6 11.4275 3.8121 -2.5914 14 6 12.7342 3.9408 -2.9158 15 7 13.4558 3.2474 -2.0103 16 6 14.9147 3.1159 -1.9910 17 6 15.4413 3.5577 -0.6500 18 1 14.7575 3.9024 0.1117 19 6 16.7959 3.5229 -0.3956 20 7 17.6286 3.1036 -1.3233 21 14 17.4486 4.0712 1.2665 22 1 16.3157 4.4952 2.1278 23 1 18.1673 2.9436 1.9127 24 1 18.3819 5.2112 1.0803 25 7 12.5659 2.6751 -1.0923 26 6 7.6436 1.8701 0.6190 27 7 6.3820 1.7527 0.9290 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8567 0.6437 -0.8909 34 1 3.8574 0.6434 0.8891 35 1 3.8367 3.1233 0.8888 36 1 3.8359 3.1230 -0.8912 37 1 6.1646 3.6439 -1.7337 38 1 10.2141 2.0864 0.0172 39 1 10.5944 4.2461 -3.1242 40 1 13.1296 4.4964 -3.7533 41 1 15.1881 2.0749 -2.1637 42 1 15.3462 3.7395 -2.7741 43 1 18.5816 3.0788 -1.1442 44 1 8.4721 1.4287 1.1530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528607010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:26 Heat of formation + Delta-G solvation = 78.427080 kcal Electronic energy + Delta-G solvation = -26384.614338 eV Core-core repulsion = 22341.165687 eV Total energy + Delta-G solvation = -4043.448651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.68240 -40.49210 -38.85423 -38.53594 -35.31451 -34.65812 -33.31586 -31.72113 -31.09427 -30.25509 -29.25358 -27.71792 -26.67925 -25.75351 -23.77503 -22.81256 -22.55832 -21.07352 -20.99442 -20.03802 -19.35272 -18.03465 -16.97267 -16.84474 -16.57037 -16.52714 -16.06209 -15.85416 -15.33068 -15.24821 -14.95287 -14.66416 -14.40725 -14.30927 -13.90228 -13.69386 -13.15492 -12.92058 -12.82856 -12.70124 -12.38613 -12.29746 -12.18455 -11.75919 -11.72603 -11.70068 -11.20533 -11.01791 -10.84241 -10.36820 -10.27777 -10.23373 -9.94609 -9.91099 -9.53728 -9.43973 -8.98252 -8.61153 -8.06564 -7.39774 -6.21888 -4.26679 1.26605 1.89159 1.93436 2.80171 2.92933 3.12343 3.24412 3.27622 3.32013 3.39009 3.90037 3.91798 4.06640 4.31585 4.35162 4.36546 4.48137 4.52351 4.61634 4.68785 4.78199 4.80323 4.84793 4.91097 5.11385 5.13443 5.13529 5.37684 5.42649 5.57518 5.65710 5.86595 6.12293 6.34697 6.44969 6.55287 6.55937 6.69650 6.90360 7.09086 7.23572 7.48539 7.65218 7.75033 7.93046 8.09223 8.37968 8.68991 8.83972 9.39007 10.86856 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.001655 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.848637 B =16915.978030 C =17480.693505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.134 4.134 5 C 0.135 3.865 6 N -0.363 5.363 7 C 0.132 3.868 8 C -0.285 4.285 9 C 0.602 3.398 10 O -0.529 6.529 11 N -0.626 5.626 12 C 0.260 3.740 13 C -0.287 4.287 14 C 0.050 3.950 15 N -0.319 5.319 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.070 0.930 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.305 5.305 26 C 0.084 3.916 27 N -0.293 5.293 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.190 0.810 38 H 0.409 0.591 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.266 0.734 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.323 -1.763 1.116 32.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.013 4.013 4 C -0.172 4.172 5 C 0.014 3.986 6 N -0.141 5.141 7 C -0.019 4.019 8 C -0.300 4.300 9 C 0.389 3.611 10 O -0.404 6.404 11 N -0.273 5.273 12 C 0.007 3.993 13 C -0.318 4.318 14 C -0.100 4.100 15 N -0.101 5.101 16 C 0.140 3.860 17 C -0.566 4.566 18 H 0.088 0.912 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.136 5.136 26 C -0.104 4.104 27 N -0.112 5.112 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.207 0.793 38 H 0.245 0.755 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -32.224 -2.614 2.033 32.394 hybrid contribution 0.487 1.004 0.124 1.123 sum -31.738 -1.610 2.157 31.851 Atomic orbital electron populations 1.22774 0.80547 1.03088 1.00100 1.87893 1.20059 1.27521 1.95442 1.22380 0.93054 0.85249 1.00602 1.21757 0.93504 0.96391 1.05529 1.21660 0.73908 0.98334 1.04665 1.48465 1.06775 1.38192 1.20713 1.22964 0.89184 0.95588 0.94160 1.20093 0.93228 1.13412 1.03315 1.17076 0.81499 0.79225 0.83286 1.90707 1.86539 1.37540 1.25652 1.42174 1.02829 1.51921 1.30340 1.19059 0.86154 0.99565 0.94501 1.21530 0.96737 1.11679 1.01858 1.22559 0.91773 0.98903 0.96729 1.49065 1.08003 1.35358 1.17702 1.19742 0.67572 0.99096 0.99554 1.21309 0.92363 1.44299 0.98592 0.91217 1.24942 0.96451 0.94927 0.97764 1.69931 1.03438 1.46514 1.33520 0.86280 0.78821 0.78296 0.83151 1.19551 1.20709 1.20804 1.77334 0.96599 1.23838 1.15850 1.24171 0.94957 0.96377 0.94884 1.77180 1.03500 1.17256 1.13257 0.93891 0.93907 0.89388 0.92792 0.92898 0.90186 0.89181 0.88959 0.87908 0.79267 0.75548 0.82246 0.81536 0.93718 0.92553 0.92412 0.79055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.85 10.70 -35.23 -0.38 -3.22 16 3 C 0.06 0.30 5.94 37.16 0.22 0.52 16 4 C -0.13 -0.76 5.76 -26.73 -0.15 -0.91 16 5 C 0.14 0.63 6.49 -4.04 -0.03 0.61 16 6 N -0.36 -3.06 3.65 -60.80 -0.22 -3.29 16 7 C 0.13 1.22 11.25 -16.55 -0.19 1.03 16 8 C -0.29 -3.29 6.13 -105.07 -0.64 -3.93 16 9 C 0.60 9.02 7.78 -12.53 -0.10 8.92 16 10 O -0.53 -9.27 14.02 5.26 0.07 -9.20 16 11 N -0.63 -9.96 5.44 -12.11 -0.07 -10.03 16 12 C 0.26 5.30 8.11 -154.42 -1.25 4.04 16 13 C -0.29 -5.74 9.61 -39.83 -0.38 -6.12 16 14 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 15 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 16 C 0.26 6.59 6.26 -5.20 -0.03 6.56 16 17 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 18 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.43 13.29 55.43 0.74 -24.70 16 21 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 N -0.31 -7.09 12.42 31.43 0.39 -6.70 16 26 C 0.08 0.86 11.50 -16.98 -0.20 0.67 16 27 N -0.29 -3.09 12.33 30.86 0.38 -2.71 16 28 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.20 8.06 -51.93 -0.42 -0.22 16 37 H 0.19 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.41 5.32 7.78 -40.82 -0.32 5.00 16 39 H 0.16 3.08 5.91 -52.49 -0.31 2.77 16 40 H 0.17 2.73 8.06 -52.48 -0.42 2.31 16 41 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.41 8.07 -51.92 -0.42 0.99 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.19 1.45 7.50 -52.48 -0.39 1.06 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -35.81 385.17 -6.83 -42.64 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.05 Total: 2.70 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.25 Total: -0.02 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.99 Total: -55.15 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.30 Total: -12.42 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.81 -6.83 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528607010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.070 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds