Wall clock time and date at job start Tue Mar 31 2020 17:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00438 * 2 1 4 4 C 1.53000 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46730 * 179.97438 * 4 3 2 6 6 N 1.46507 * 109.46845 * 179.97438 * 5 4 3 7 7 C 1.34266 * 125.75032 * 125.00463 * 6 5 4 8 8 C 1.38055 * 107.41406 * 180.02562 * 7 6 5 9 9 C 1.47414 * 126.41363 * 179.97438 * 8 7 6 10 10 O 1.21616 * 120.00075 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99450 * 180.02562 * 9 8 7 12 12 C 1.40118 * 119.99984 * 179.97438 * 11 9 8 13 13 C 1.40421 * 125.96849 * 359.71353 * 12 11 9 14 14 C 1.35244 * 107.86166 * 179.86621 * 13 12 11 15 15 N 1.34965 * 107.86412 * 0.38649 * 14 13 12 16 16 C 1.46496 * 125.97534 * 179.75070 * 15 14 13 17 17 C 1.50693 * 109.47449 * 124.98066 * 16 15 14 18 18 H 1.08002 * 119.99598 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00406 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99899 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00118 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47210 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47064 * 119.99671 * 21 19 17 24 24 H 1.48499 * 109.47191 * 239.99799 * 21 19 17 25 25 N 1.31221 * 125.97694 * 180.02562 * 12 11 9 26 26 C 1.41288 * 107.16609 * 359.97438 * 8 7 6 27 27 N 1.30445 * 108.02917 * 0.02562 * 26 8 7 28 28 H 1.09005 * 109.46750 * 299.99849 * 1 2 3 29 29 H 1.08999 * 109.47167 * 59.99270 * 1 2 3 30 30 H 1.09000 * 109.47444 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46901 * 60.00149 * 3 2 1 32 32 H 1.09002 * 109.46886 * 300.00330 * 3 2 1 33 33 H 1.09002 * 109.46732 * 60.00371 * 4 3 2 34 34 H 1.08996 * 109.46992 * 299.99860 * 4 3 2 35 35 H 1.09002 * 109.47093 * 60.00736 * 5 4 3 36 36 H 1.08995 * 109.47831 * 300.00054 * 5 4 3 37 37 H 1.08005 * 126.29329 * 0.26004 * 7 6 5 38 38 H 0.97000 * 120.00559 * 359.97438 * 11 9 8 39 39 H 1.07995 * 126.07075 * 359.97438 * 13 12 11 40 40 H 1.08006 * 126.06439 * 180.14353 * 14 13 12 41 41 H 1.09004 * 109.47365 * 244.98503 * 16 15 14 42 42 H 1.09008 * 109.47392 * 4.97920 * 16 15 14 43 43 H 0.97005 * 119.99909 * 180.02562 * 20 19 17 44 44 H 1.08008 * 125.98427 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5822 -0.0013 6 7 5.6183 2.4664 -0.0013 7 6 6.4497 3.0272 -0.8941 8 6 7.7363 2.6749 -0.5386 9 6 8.9749 3.0654 -1.2361 10 8 8.9188 3.7658 -2.2288 11 7 10.1693 2.6453 -0.7743 12 6 11.3466 3.0160 -1.4376 13 6 11.4275 3.8121 -2.5914 14 6 12.7342 3.9408 -2.9158 15 7 13.4558 3.2474 -2.0103 16 6 14.9147 3.1159 -1.9910 17 6 15.4413 3.5577 -0.6500 18 1 14.7575 3.9024 0.1117 19 6 16.7959 3.5229 -0.3956 20 7 17.6286 3.1036 -1.3233 21 14 17.4486 4.0712 1.2665 22 1 16.3157 4.4952 2.1278 23 1 18.1673 2.9436 1.9127 24 1 18.3819 5.2112 1.0803 25 7 12.5659 2.6751 -1.0923 26 6 7.6436 1.8701 0.6190 27 7 6.3820 1.7527 0.9290 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8567 0.6437 -0.8909 34 1 3.8574 0.6434 0.8891 35 1 3.8367 3.1233 0.8888 36 1 3.8359 3.1230 -0.8912 37 1 6.1646 3.6439 -1.7337 38 1 10.2141 2.0864 0.0172 39 1 10.5944 4.2461 -3.1242 40 1 13.1296 4.4964 -3.7533 41 1 15.1881 2.0749 -2.1637 42 1 15.3462 3.7395 -2.7741 43 1 18.5816 3.0788 -1.1442 44 1 8.4721 1.4287 1.1530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528607010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:23 Heat of formation + Delta-G solvation = 54.014507 kcal Electronic energy + Delta-G solvation = -26385.672947 eV Core-core repulsion = 22341.165687 eV Total energy + Delta-G solvation = -4044.507260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51127 -42.01065 -40.11010 -38.96902 -36.17563 -35.84059 -35.20934 -32.89735 -32.22142 -31.24759 -30.88017 -28.66019 -27.98836 -26.33431 -25.19899 -24.08984 -23.26458 -22.37582 -21.81039 -21.39135 -20.59849 -18.94448 -18.66617 -18.09746 -17.41492 -17.23122 -16.97815 -16.88610 -16.59774 -16.23106 -16.10105 -15.65956 -15.61729 -15.27552 -15.01635 -14.85471 -14.42941 -14.21433 -13.89167 -13.72751 -13.64783 -13.29697 -13.23488 -12.91398 -12.74602 -12.71274 -12.28978 -12.28610 -12.08271 -12.01647 -11.85989 -11.54709 -11.33903 -10.83376 -10.70437 -10.64029 -10.61371 -9.84101 -9.67878 -9.04364 -8.31344 -6.45319 0.42463 0.99824 1.22894 1.27692 1.38443 1.40298 1.52056 1.57483 1.94254 2.33891 2.51247 2.59583 2.76639 3.00382 3.43738 3.74773 3.82858 3.94551 4.00456 4.10906 4.12074 4.23301 4.31244 4.37581 4.45297 4.47072 4.55664 4.56077 4.64676 4.85725 4.86790 4.95890 4.97260 4.97550 5.06050 5.10202 5.22097 5.37454 5.59012 5.82502 5.83880 5.98461 6.22318 6.28965 6.35279 6.50981 6.67712 7.08340 7.18889 7.24790 8.76351 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.001655 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.848637 B =16915.978030 C =17480.693505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.064 3.936 4 C -0.126 4.126 5 C 0.129 3.871 6 N -0.356 5.356 7 C 0.149 3.851 8 C -0.312 4.312 9 C 0.605 3.395 10 O -0.556 6.556 11 N -0.623 5.623 12 C 0.268 3.732 13 C -0.293 4.293 14 C 0.056 3.944 15 N -0.345 5.345 16 C 0.272 3.728 17 C -0.547 4.547 18 H 0.052 0.948 19 C 0.019 3.981 20 N -0.921 5.921 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.273 1.273 24 H -0.270 1.270 25 N -0.348 5.348 26 C 0.085 3.915 27 N -0.316 5.316 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.218 0.782 38 H 0.421 0.579 39 H 0.170 0.830 40 H 0.202 0.798 41 H 0.021 0.979 42 H 0.059 0.941 43 H 0.272 0.728 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.361 -0.638 1.442 34.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.013 4.013 4 C -0.164 4.164 5 C 0.010 3.990 6 N -0.133 5.133 7 C -0.004 4.004 8 C -0.327 4.327 9 C 0.396 3.604 10 O -0.434 6.434 11 N -0.271 5.271 12 C 0.014 3.986 13 C -0.324 4.324 14 C -0.093 4.093 15 N -0.127 5.127 16 C 0.153 3.847 17 C -0.585 4.585 18 H 0.070 0.930 19 C -0.181 4.181 20 N -0.560 5.560 21 Si 0.796 3.204 22 H -0.199 1.199 23 H -0.199 1.199 24 H -0.195 1.195 25 N -0.179 5.179 26 C -0.103 4.103 27 N -0.135 5.135 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.157 0.843 37 H 0.234 0.766 38 H 0.259 0.741 39 H 0.187 0.813 40 H 0.219 0.781 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -34.316 -1.508 2.379 34.431 hybrid contribution 0.897 0.635 -0.010 1.099 sum -33.419 -0.873 2.369 33.514 Atomic orbital electron populations 1.22916 0.79213 1.03696 1.01141 1.87843 1.21703 1.29185 1.95704 1.22477 0.91957 0.84654 1.02239 1.21644 0.94602 0.96643 1.03558 1.22055 0.71588 0.98112 1.07281 1.48782 1.08019 1.36877 1.19662 1.23371 0.88447 0.94435 0.94139 1.19883 0.92538 1.15762 1.04502 1.17542 0.81820 0.78225 0.82863 1.90672 1.86874 1.38864 1.26978 1.42311 1.01893 1.52227 1.30654 1.19414 0.86639 0.98229 0.94364 1.21741 0.96933 1.11765 1.01928 1.23180 0.91677 0.97789 0.96623 1.48827 1.07380 1.37288 1.19164 1.19336 0.69227 0.97484 0.98618 1.21442 0.92699 1.45027 0.99332 0.92964 1.25726 0.96475 0.94666 1.01255 1.70003 1.03921 1.46853 1.35193 0.85298 0.78058 0.78314 0.78720 1.19946 1.19874 1.19508 1.77254 0.97676 1.25736 1.17199 1.24465 0.95478 0.95828 0.94489 1.77164 1.03745 1.18210 1.14400 0.92917 0.92736 0.89167 0.91435 0.90843 0.91657 0.91649 0.87374 0.84294 0.76596 0.74119 0.81284 0.78149 0.96090 0.92309 0.91865 0.77441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.43 16 2 O -0.42 -5.76 10.70 -148.98 -1.59 -7.36 16 3 C 0.06 0.47 5.94 71.98 0.43 0.89 16 4 C -0.13 -1.25 5.76 30.59 0.18 -1.08 16 5 C 0.13 0.83 6.49 86.38 0.56 1.39 16 6 N -0.36 -5.21 3.65 -346.27 -1.26 -6.47 16 7 C 0.15 2.38 11.25 84.28 0.95 3.33 16 8 C -0.31 -6.77 6.13 -20.15 -0.12 -6.89 16 9 C 0.61 17.65 7.78 86.66 0.67 18.33 16 10 O -0.56 -18.97 14.02 -4.08 -0.06 -19.03 16 11 N -0.62 -19.67 5.44 -310.47 -1.69 -21.35 16 12 C 0.27 10.95 8.11 133.34 1.08 12.03 16 13 C -0.29 -11.59 9.61 22.11 0.21 -11.38 16 14 C 0.06 2.23 11.44 83.52 0.96 3.18 16 15 N -0.34 -16.44 3.67 -351.84 -1.29 -17.73 16 16 C 0.27 14.29 6.26 85.63 0.54 14.83 16 17 C -0.55 -31.20 9.24 25.60 0.24 -30.96 16 18 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 19 C 0.02 1.06 5.46 84.65 0.46 1.52 16 20 N -0.92 -52.50 13.29 21.45 0.28 -52.22 16 21 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 N -0.35 -16.49 12.42 -54.47 -0.68 -17.17 16 26 C 0.09 1.66 11.50 85.65 0.99 2.64 16 27 N -0.32 -6.28 12.33 -56.27 -0.69 -6.97 16 28 H 0.05 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.14 -0.07 8.06 -2.39 -0.02 -0.09 16 37 H 0.22 2.16 8.06 -2.91 -0.02 2.13 16 38 H 0.42 10.90 7.78 -92.71 -0.72 10.18 16 39 H 0.17 6.38 5.91 -2.91 -0.02 6.36 16 40 H 0.20 6.29 8.06 -2.91 -0.02 6.26 16 41 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.06 3.01 8.07 -2.38 -0.02 2.99 16 43 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 44 H 0.21 2.98 7.50 -2.91 -0.02 2.96 16 Total: -1.00 -78.34 385.17 3.73 -74.60 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.31 Total: 18.42 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 8.38 Total: 9.26 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -5.33 Total: -121.91 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -1.65 Total: -26.39 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -78.34 3.73 -74.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528607010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.617 kcal (2) G-P(sol) polarization free energy of solvation -78.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds