Wall clock time and date at job start Tue Mar 31 2020 17:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99864 * 2 1 4 4 C 1.39053 * 120.00267 * 179.97438 * 2 1 3 5 5 C 1.39300 * 119.90491 * 0.02562 * 4 2 1 6 6 C 1.36536 * 120.26628 * 179.97438 * 5 4 2 7 7 C 1.39854 * 120.08083 * 359.97438 * 6 5 4 8 8 C 1.47365 * 120.09424 * 179.97438 * 7 6 5 9 9 O 1.21615 * 120.00144 * 138.95427 * 8 7 6 10 10 N 1.34783 * 120.00074 * 318.95733 * 8 7 6 11 11 C 1.49764 * 127.89985 * 355.02054 * 10 8 7 12 12 C 1.56018 * 105.31648 * 181.25391 * 11 10 8 13 13 H 1.09005 * 116.25030 * 160.00561 * 12 11 10 14 14 C 1.57088 * 99.60714 * 33.13488 * 12 11 10 15 15 C 1.49284 * 126.94764 * 174.73579 * 10 8 7 16 16 H 1.09004 * 116.15010 * 16.70394 * 15 10 8 17 17 C 1.56026 * 104.09150 * 247.56330 * 15 10 8 18 18 N 1.47867 * 105.10021 * 287.91539 * 17 15 10 19 19 C 1.36937 * 126.93854 * 182.03349 * 18 17 15 20 20 H 1.08009 * 119.99605 * 174.79270 * 19 18 17 21 21 C 1.38804 * 120.00359 * 354.79817 * 19 18 17 22 22 N 1.31614 * 120.00400 * 5.19211 * 21 19 18 23 23 Si 1.86804 * 120.00231 * 185.19285 * 21 19 18 24 24 H 1.48504 * 109.47336 * 94.99474 * 23 21 19 25 25 H 1.48498 * 109.47499 * 214.99746 * 23 21 19 26 26 H 1.48504 * 109.46675 * 334.99853 * 23 21 19 27 27 C 1.40069 * 119.81282 * 0.25234 * 7 6 5 28 28 F 1.35098 * 120.13069 * 179.74762 * 27 7 6 29 29 C 1.37999 * 119.73347 * 359.51655 * 27 7 6 30 30 H 1.09002 * 109.47169 * 269.99938 * 1 2 3 31 31 H 1.08999 * 109.47192 * 30.00307 * 1 2 3 32 32 H 1.08999 * 109.46832 * 150.00004 * 1 2 3 33 33 H 1.09002 * 109.46703 * 270.00014 * 3 2 1 34 34 H 1.09002 * 109.46942 * 29.99973 * 3 2 1 35 35 H 1.09003 * 109.46962 * 149.99919 * 3 2 1 36 36 H 1.07999 * 119.86698 * 0.02562 * 5 4 2 37 37 H 1.07996 * 119.95718 * 180.02562 * 6 5 4 38 38 H 1.09005 * 109.93334 * 62.42587 * 11 10 8 39 39 H 1.08994 * 110.57688 * 300.41993 * 11 10 8 40 40 H 1.08995 * 112.36880 * 191.71316 * 14 12 11 41 41 H 1.08996 * 112.36387 * 64.26776 * 14 12 11 42 42 H 1.08998 * 110.31878 * 46.82765 * 17 15 10 43 43 H 1.09000 * 110.31292 * 168.91384 * 17 15 10 44 44 H 0.97001 * 120.00913 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.04392 * 180.22159 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2042 0.0005 5 6 1.4619 -2.4094 0.0005 6 6 2.1371 -3.5961 0.0005 7 6 3.5356 -3.6069 0.0000 8 6 4.2648 -4.8875 0.0006 9 8 5.2556 -5.0234 -0.6913 10 7 3.8335 -5.9082 0.7679 11 6 2.7075 -5.9049 1.7553 12 6 2.6889 -7.3414 2.3640 13 1 2.1807 -7.4526 3.3219 14 6 4.2262 -7.6622 2.3258 15 6 4.3820 -7.2961 0.8062 16 1 5.3723 -7.4334 0.3717 17 6 3.2385 -8.1732 0.2085 18 7 2.1899 -8.2016 1.2506 19 6 1.0015 -8.8804 1.2041 20 1 0.3515 -8.8908 2.0665 21 6 0.6324 -9.5551 0.0486 22 7 1.4678 -9.6289 -0.9658 23 14 -1.0501 -10.3585 -0.0669 24 1 -1.9982 -9.4285 -0.7313 25 1 -0.9476 -11.6104 -0.8591 26 1 -1.5420 -10.6753 1.2980 27 6 4.2413 -2.3969 0.0048 28 9 5.5923 -2.3998 0.0095 29 6 3.5511 -1.2020 -0.0001 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3791 1.5834 -1.0277 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5139 36 1 0.3819 -2.4052 -0.0003 37 1 1.5906 -4.5276 0.0001 38 1 1.7666 -5.6979 1.2454 39 1 2.8848 -5.1654 2.5361 40 1 4.4356 -8.7135 2.5228 41 1 4.8038 -7.0020 2.9728 42 1 2.8523 -7.7206 -0.7048 43 1 3.6009 -9.1812 0.0066 44 1 1.2098 -10.1001 -1.7735 45 1 4.0902 -0.2661 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032443719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:25 Heat of formation + Delta-G solvation = 30.642394 kcal Electronic energy + Delta-G solvation = -29265.733380 eV Core-core repulsion = 25200.292668 eV Total energy + Delta-G solvation = -4065.440712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.75317 -40.19782 -39.42963 -37.70429 -36.04076 -33.53361 -31.74781 -31.03390 -30.19479 -28.83291 -28.49324 -28.36588 -25.72688 -25.14016 -23.56031 -22.48395 -21.85668 -20.49235 -19.77515 -18.75420 -17.83773 -17.26730 -16.74302 -16.37728 -15.86390 -15.75002 -15.54794 -15.17762 -14.97746 -14.81236 -14.45175 -14.10444 -13.91702 -13.46610 -13.09732 -12.99285 -12.85839 -12.61056 -12.52432 -12.32210 -12.24853 -12.05539 -11.77789 -11.62123 -11.31836 -11.09661 -10.97155 -10.85390 -10.71149 -10.56677 -10.20916 -10.05643 -9.94673 -9.63305 -9.40649 -8.88588 -8.68900 -7.95918 -7.54249 -6.91303 -5.77094 -3.11314 1.08018 1.26410 2.73699 3.12809 3.36537 3.41504 3.41916 3.44646 3.81440 4.28526 4.41864 4.57951 4.68844 4.79998 4.87223 4.93881 5.02019 5.13061 5.21328 5.23340 5.29113 5.36142 5.38841 5.39397 5.45865 5.58501 5.66372 5.81415 5.82564 5.98322 6.00187 6.03890 6.27943 6.33476 6.35987 6.44456 6.52049 6.62541 6.65731 6.74041 6.88043 7.14342 7.42424 7.53478 7.73333 8.09782 8.15633 8.68396 9.10267 9.71352 10.41461 11.35023 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.003657 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.945494 B = 7655.125843 C = 9047.247500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.630 5.630 3 C 0.089 3.911 4 C 0.257 3.743 5 C -0.212 4.212 6 C -0.007 4.007 7 C -0.214 4.214 8 C 0.580 3.420 9 O -0.548 6.548 10 N -0.604 5.604 11 C 0.085 3.915 12 C 0.140 3.860 13 H 0.107 0.893 14 C -0.150 4.150 15 C 0.098 3.902 16 H 0.112 0.888 17 C 0.174 3.826 18 N -0.597 5.597 19 C -0.232 4.232 20 H 0.081 0.919 21 C -0.004 4.004 22 N -0.917 5.917 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.196 3.804 28 F -0.124 7.124 29 C -0.250 4.250 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.144 0.856 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.254 0.746 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 19.872 5.414 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.340 5.340 3 C -0.054 4.054 4 C 0.153 3.847 5 C -0.234 4.234 6 C -0.026 4.026 7 C -0.220 4.220 8 C 0.369 3.631 9 O -0.427 6.427 10 N -0.338 5.338 11 C -0.040 4.040 12 C 0.031 3.969 13 H 0.125 0.875 14 C -0.190 4.190 15 C -0.005 4.005 16 H 0.130 0.870 17 C 0.049 3.951 18 N -0.322 5.322 19 C -0.360 4.360 20 H 0.098 0.902 21 C -0.201 4.201 22 N -0.563 5.563 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.175 3.825 28 F -0.102 7.102 29 C -0.274 4.274 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.151 0.849 37 H 0.162 0.838 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.257 19.892 4.803 20.465 hybrid contribution -0.779 -0.295 -0.272 0.876 sum -1.036 19.597 4.532 20.140 Atomic orbital electron populations 1.21733 0.78879 1.03116 1.01628 1.46263 1.05440 1.03190 1.79082 1.21718 0.97432 0.84739 1.01533 1.17598 0.90195 0.86025 0.90903 1.20425 1.00307 0.90460 1.12253 1.20934 0.91898 0.98797 0.90978 1.19762 0.94408 0.92526 1.15333 1.17452 0.83594 0.82454 0.79586 1.90772 1.26531 1.82676 1.42764 1.49487 1.33717 1.10684 1.39880 1.23750 0.89199 1.00160 0.90880 1.23191 0.92482 0.88263 0.92958 0.87527 1.24138 0.98018 1.01426 0.95417 1.24303 0.98950 0.80459 0.96774 0.86989 1.21945 0.85469 0.96540 0.91189 1.45252 1.18146 1.54021 1.14749 1.19046 0.93792 1.24997 0.98202 0.90160 1.24826 0.98281 1.00807 0.96228 1.69928 1.34361 1.46500 1.05505 0.86131 0.83754 0.78569 0.77460 1.21666 1.21789 1.20598 1.17262 0.76714 0.92582 0.95955 1.91539 1.28520 1.97287 1.92900 1.20379 0.92772 0.97299 1.16902 0.92883 0.91326 0.90713 0.92992 0.91273 0.91013 0.84909 0.83800 0.90792 0.92649 0.89764 0.91634 0.93182 0.92953 0.93582 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.17 59.85 0.61 1.18 16 2 N -0.63 -5.54 3.39 -187.57 -0.64 -6.18 16 3 C 0.09 0.56 10.17 59.85 0.61 1.17 16 4 C 0.26 2.98 6.55 -83.88 -0.55 2.43 16 5 C -0.21 -2.59 9.13 -39.80 -0.36 -2.96 16 6 C -0.01 -0.10 8.50 -39.59 -0.34 -0.44 16 7 C -0.21 -3.69 5.52 -104.89 -0.58 -4.27 16 8 C 0.58 11.90 7.33 -12.54 -0.09 11.81 16 9 O -0.55 -13.00 16.66 5.26 0.09 -12.91 16 10 N -0.60 -11.79 3.01 -156.50 -0.47 -12.26 16 11 C 0.08 1.47 5.37 -0.61 0.00 1.46 16 12 C 0.14 2.58 5.53 -62.55 -0.35 2.23 16 13 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 14 C -0.15 -2.60 6.82 -22.30 -0.15 -2.75 16 15 C 0.10 1.96 5.20 -62.55 -0.33 1.64 16 16 H 0.11 2.22 8.04 -51.93 -0.42 1.80 16 17 C 0.17 4.18 4.76 -1.67 -0.01 4.17 16 18 N -0.60 -14.16 3.02 -156.34 -0.47 -14.63 16 19 C -0.23 -6.06 10.37 -15.06 -0.16 -6.22 16 20 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 21 C 0.00 -0.12 5.49 -17.44 -0.10 -0.21 16 22 N -0.92 -26.48 10.59 55.49 0.59 -25.89 16 23 Si 0.91 21.38 29.56 -169.99 -5.02 16.35 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.20 3.12 7.24 -38.98 -0.28 2.84 16 28 F -0.12 -2.17 16.28 2.25 0.04 -2.13 16 29 C -0.25 -3.16 9.17 -39.36 -0.36 -3.52 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 32 H 0.07 0.49 6.17 -51.93 -0.32 0.17 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 35 H 0.07 0.45 6.17 -51.93 -0.32 0.13 16 36 H 0.13 1.33 6.10 -52.49 -0.32 1.01 16 37 H 0.14 2.26 5.86 -52.49 -0.31 1.95 16 38 H 0.07 1.33 5.86 -51.93 -0.30 1.03 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 1.38 7.55 -51.93 -0.39 0.99 16 43 H 0.05 1.39 7.60 -51.93 -0.39 0.99 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.14 1.42 6.11 -52.48 -0.32 1.10 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -33.20 361.76 -8.89 -42.09 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.02 Total: 1.54 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -2.43 Total: 8.56 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.99 Total: -58.95 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.20 -8.89 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032443719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.732 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds