Wall clock time and date at job start Tue Mar 31 2020 17:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99864 * 2 1 4 4 C 1.39053 * 120.00267 * 179.97438 * 2 1 3 5 5 C 1.39300 * 119.90491 * 0.02562 * 4 2 1 6 6 C 1.36536 * 120.26628 * 179.97438 * 5 4 2 7 7 C 1.39854 * 120.08083 * 359.97438 * 6 5 4 8 8 C 1.47365 * 120.09424 * 179.97438 * 7 6 5 9 9 O 1.21615 * 120.00144 * 138.95427 * 8 7 6 10 10 N 1.34783 * 120.00074 * 318.95733 * 8 7 6 11 11 C 1.49764 * 127.89985 * 355.02054 * 10 8 7 12 12 C 1.56018 * 105.31648 * 181.25391 * 11 10 8 13 13 H 1.09005 * 116.25030 * 160.00561 * 12 11 10 14 14 C 1.57088 * 99.60714 * 33.13488 * 12 11 10 15 15 C 1.49284 * 126.94764 * 174.73579 * 10 8 7 16 16 H 1.09004 * 116.15010 * 16.70394 * 15 10 8 17 17 C 1.56026 * 104.09150 * 247.56330 * 15 10 8 18 18 N 1.47867 * 105.10021 * 287.91539 * 17 15 10 19 19 C 1.36937 * 126.93854 * 182.03349 * 18 17 15 20 20 H 1.08009 * 119.99605 * 174.79270 * 19 18 17 21 21 C 1.38804 * 120.00359 * 354.79817 * 19 18 17 22 22 N 1.31614 * 120.00400 * 5.19211 * 21 19 18 23 23 Si 1.86804 * 120.00231 * 185.19285 * 21 19 18 24 24 H 1.48504 * 109.47336 * 94.99474 * 23 21 19 25 25 H 1.48498 * 109.47499 * 214.99746 * 23 21 19 26 26 H 1.48504 * 109.46675 * 334.99853 * 23 21 19 27 27 C 1.40069 * 119.81282 * 0.25234 * 7 6 5 28 28 F 1.35098 * 120.13069 * 179.74762 * 27 7 6 29 29 C 1.37999 * 119.73347 * 359.51655 * 27 7 6 30 30 H 1.09002 * 109.47169 * 269.99938 * 1 2 3 31 31 H 1.08999 * 109.47192 * 30.00307 * 1 2 3 32 32 H 1.08999 * 109.46832 * 150.00004 * 1 2 3 33 33 H 1.09002 * 109.46703 * 270.00014 * 3 2 1 34 34 H 1.09002 * 109.46942 * 29.99973 * 3 2 1 35 35 H 1.09003 * 109.46962 * 149.99919 * 3 2 1 36 36 H 1.07999 * 119.86698 * 0.02562 * 5 4 2 37 37 H 1.07996 * 119.95718 * 180.02562 * 6 5 4 38 38 H 1.09005 * 109.93334 * 62.42587 * 11 10 8 39 39 H 1.08994 * 110.57688 * 300.41993 * 11 10 8 40 40 H 1.08995 * 112.36880 * 191.71316 * 14 12 11 41 41 H 1.08996 * 112.36387 * 64.26776 * 14 12 11 42 42 H 1.08998 * 110.31878 * 46.82765 * 17 15 10 43 43 H 1.09000 * 110.31292 * 168.91384 * 17 15 10 44 44 H 0.97001 * 120.00913 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.04392 * 180.22159 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2042 0.0005 5 6 1.4619 -2.4094 0.0005 6 6 2.1371 -3.5961 0.0005 7 6 3.5356 -3.6069 0.0000 8 6 4.2648 -4.8875 0.0006 9 8 5.2556 -5.0234 -0.6913 10 7 3.8335 -5.9082 0.7679 11 6 2.7075 -5.9049 1.7553 12 6 2.6889 -7.3414 2.3640 13 1 2.1807 -7.4526 3.3219 14 6 4.2262 -7.6622 2.3258 15 6 4.3820 -7.2961 0.8062 16 1 5.3723 -7.4334 0.3717 17 6 3.2385 -8.1732 0.2085 18 7 2.1899 -8.2016 1.2506 19 6 1.0015 -8.8804 1.2041 20 1 0.3515 -8.8908 2.0665 21 6 0.6324 -9.5551 0.0486 22 7 1.4678 -9.6289 -0.9658 23 14 -1.0501 -10.3585 -0.0669 24 1 -1.9982 -9.4285 -0.7313 25 1 -0.9476 -11.6104 -0.8591 26 1 -1.5420 -10.6753 1.2980 27 6 4.2413 -2.3969 0.0048 28 9 5.5923 -2.3998 0.0095 29 6 3.5511 -1.2020 -0.0001 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3791 1.5834 -1.0277 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5139 36 1 0.3819 -2.4052 -0.0003 37 1 1.5906 -4.5276 0.0001 38 1 1.7666 -5.6979 1.2454 39 1 2.8848 -5.1654 2.5361 40 1 4.4356 -8.7135 2.5228 41 1 4.8038 -7.0020 2.9728 42 1 2.8523 -7.7206 -0.7048 43 1 3.6009 -9.1812 0.0066 44 1 1.2098 -10.1001 -1.7735 45 1 4.0902 -0.2661 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032443719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:20 Heat of formation + Delta-G solvation = 10.366120 kcal Electronic energy + Delta-G solvation = -29266.612625 eV Core-core repulsion = 25200.292668 eV Total energy + Delta-G solvation = -4066.319957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -49.99680 -41.64370 -40.56008 -39.22643 -37.00606 -35.38525 -33.37937 -32.13094 -31.44192 -30.37437 -30.18120 -28.98654 -26.99218 -26.64023 -25.14824 -23.55812 -23.06927 -21.84671 -21.36587 -20.31188 -19.21027 -18.55097 -18.02435 -17.81790 -17.24465 -17.02000 -16.69499 -16.56182 -16.04705 -15.92496 -15.76185 -15.62798 -15.25095 -14.99259 -14.62532 -14.10679 -13.85648 -13.64710 -13.50451 -13.40691 -13.33283 -13.21669 -13.18401 -13.05079 -12.85768 -12.80357 -12.68696 -12.31285 -12.14294 -12.06172 -11.97995 -11.78757 -11.51033 -11.06781 -10.88178 -10.68651 -9.96382 -9.56192 -8.88660 -8.41079 -7.82126 -5.17867 -0.06606 0.21176 1.49478 1.50434 1.59715 1.72743 1.93436 2.04606 2.50834 2.63554 3.20829 3.33207 3.38568 3.53822 3.63918 3.82046 3.91245 3.97203 4.04464 4.12920 4.21001 4.26637 4.41793 4.44680 4.53556 4.58415 4.67639 4.75769 4.79506 4.85394 4.90765 4.92290 4.98226 5.00700 5.05052 5.09343 5.14067 5.25734 5.27879 5.46514 5.55483 5.60744 5.67395 6.11272 6.17337 6.29036 6.61513 7.04621 7.12331 7.73146 8.44572 9.29431 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.003657 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.945494 B = 7655.125843 C = 9047.247500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.623 5.623 3 C 0.079 3.921 4 C 0.269 3.731 5 C -0.205 4.205 6 C -0.008 4.008 7 C -0.246 4.246 8 C 0.572 3.428 9 O -0.595 6.595 10 N -0.606 5.606 11 C 0.092 3.908 12 C 0.138 3.862 13 H 0.140 0.860 14 C -0.129 4.129 15 C 0.096 3.904 16 H 0.107 0.893 17 C 0.190 3.810 18 N -0.614 5.614 19 C -0.228 4.228 20 H 0.098 0.902 21 C -0.070 4.070 22 N -0.957 5.957 23 Si 0.976 3.024 24 H -0.291 1.291 25 H -0.304 1.304 26 H -0.260 1.260 27 C 0.180 3.820 28 F -0.141 7.141 29 C -0.243 4.243 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.158 0.842 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.001 0.999 43 H 0.015 0.985 44 H 0.243 0.757 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 23.052 7.984 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.330 5.330 3 C -0.063 4.063 4 C 0.161 3.839 5 C -0.227 4.227 6 C -0.028 4.028 7 C -0.252 4.252 8 C 0.364 3.636 9 O -0.478 6.478 10 N -0.338 5.338 11 C -0.031 4.031 12 C 0.032 3.968 13 H 0.158 0.842 14 C -0.168 4.168 15 C -0.007 4.007 16 H 0.125 0.875 17 C 0.064 3.936 18 N -0.338 5.338 19 C -0.357 4.357 20 H 0.116 0.884 21 C -0.262 4.262 22 N -0.606 5.606 23 Si 0.805 3.195 24 H -0.218 1.218 25 H -0.232 1.232 26 H -0.184 1.184 27 C 0.159 3.841 28 F -0.119 7.119 29 C -0.267 4.267 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.176 0.824 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.019 0.981 43 H 0.034 0.966 44 H 0.052 0.948 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.355 23.140 7.449 24.423 hybrid contribution -0.221 -1.089 -1.056 1.533 sum -2.576 22.051 6.392 23.103 Atomic orbital electron populations 1.21986 0.77218 1.04260 1.02759 1.46638 1.06666 1.02935 1.76767 1.21977 0.97860 0.83990 1.02488 1.17677 0.89968 0.87093 0.89133 1.20617 1.01450 0.89667 1.10976 1.20766 0.90838 0.99366 0.91829 1.19559 0.95174 0.91197 1.19309 1.18082 0.83251 0.83672 0.78634 1.90721 1.28826 1.83737 1.44545 1.49567 1.34119 1.10016 1.40122 1.23713 0.88178 1.00229 0.90983 1.23601 0.93030 0.87559 0.92651 0.84206 1.24045 0.97465 1.02173 0.93093 1.24164 0.97140 0.80578 0.98858 0.87494 1.21503 0.86966 0.94865 0.90313 1.45485 1.17585 1.54624 1.16153 1.19551 0.94404 1.23470 0.98279 0.88407 1.25668 1.01689 1.02555 0.96336 1.70176 1.36243 1.48210 1.05941 0.85085 0.79656 0.76804 0.77950 1.21788 1.23183 1.18427 1.17517 0.76170 0.93333 0.97083 1.91490 1.29781 1.97394 1.93228 1.20553 0.93304 0.96898 1.15918 0.91665 0.89058 0.90836 0.92202 0.88773 0.90832 0.82407 0.85284 0.91635 0.88977 0.89730 0.88352 0.98104 0.96643 0.94788 0.82109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.17 127.77 1.30 1.98 16 2 N -0.62 -8.40 3.39 -747.33 -2.53 -10.93 16 3 C 0.08 0.66 10.17 127.77 1.30 1.96 16 4 C 0.27 5.45 6.55 38.45 0.25 5.70 16 5 C -0.21 -4.55 9.13 22.13 0.20 -4.35 16 6 C -0.01 -0.25 8.50 22.26 0.19 -0.06 16 7 C -0.25 -8.63 5.52 -20.04 -0.11 -8.74 16 8 C 0.57 24.48 7.33 86.64 0.63 25.12 16 9 O -0.60 -29.96 16.66 -4.08 -0.07 -30.03 16 10 N -0.61 -24.14 3.01 -767.29 -2.31 -26.44 16 11 C 0.09 3.07 5.37 86.79 0.47 3.54 16 12 C 0.14 4.82 5.53 46.93 0.26 5.08 16 13 H 0.14 4.01 8.14 -2.38 -0.02 3.99 16 14 C -0.13 -4.25 6.82 33.47 0.23 -4.02 16 15 C 0.10 3.98 5.20 46.93 0.24 4.23 16 16 H 0.11 4.51 8.04 -2.38 -0.02 4.49 16 17 C 0.19 9.68 4.76 87.17 0.41 10.10 16 18 N -0.61 -29.37 3.02 -648.53 -1.96 -31.33 16 19 C -0.23 -11.90 10.37 84.03 0.87 -11.03 16 20 H 0.10 4.66 7.83 -2.91 -0.02 4.64 16 21 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 22 N -0.96 -58.33 10.59 21.65 0.23 -58.10 16 23 Si 0.98 44.67 29.56 68.60 2.03 46.70 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 C 0.18 5.71 7.24 22.66 0.16 5.88 16 28 F -0.14 -5.02 16.28 44.97 0.73 -4.29 16 29 C -0.24 -5.65 9.17 22.41 0.21 -5.45 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.09 0.42 8.07 -2.39 -0.02 0.40 16 32 H 0.07 0.68 6.17 -2.39 -0.01 0.66 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.37 8.07 -2.39 -0.02 0.35 16 35 H 0.07 0.62 6.17 -2.39 -0.01 0.61 16 36 H 0.16 2.65 6.10 -2.91 -0.02 2.63 16 37 H 0.13 4.14 5.86 -2.91 -0.02 4.12 16 38 H 0.07 2.33 5.86 -2.38 -0.01 2.32 16 39 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.00 0.05 7.55 -2.39 -0.02 0.03 16 43 H 0.02 0.88 7.60 -2.39 -0.02 0.87 16 44 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.16 2.87 6.11 -2.91 -0.02 2.85 16 Total: -1.00 -77.95 361.76 4.23 -73.72 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.02 Total: 14.19 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 7.09 Total: 26.52 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -6.57 Total: -126.81 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.07 Total: -30.03 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.73 Total: -4.29 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -77.95 4.23 -73.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032443719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.090 kcal (2) G-P(sol) polarization free energy of solvation -77.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds