Wall clock time and date at job start Tue Mar 31 2020 17:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 119.99896 * 2 1 4 4 O 1.21549 * 119.99984 * 0.02562 * 3 2 1 5 5 C 1.47910 * 119.99727 * 180.02562 * 3 2 1 6 6 C 1.40013 * 120.09968 * 180.02562 * 5 3 2 7 7 C 1.38379 * 117.97746 * 179.97438 * 6 5 3 8 8 C 1.39488 * 118.03041 * 359.97438 * 7 6 5 9 9 N 1.38969 * 120.03481 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00413 * 16.54674 * 9 8 7 11 11 O 1.21572 * 120.00126 * 5.75293 * 10 9 8 12 12 N 1.34781 * 120.00315 * 186.03467 * 10 9 8 13 13 C 1.46927 * 120.62728 * 354.40069 * 12 10 9 14 14 C 1.53621 * 108.53935 * 126.37295 * 13 12 10 15 15 C 1.53043 * 109.24284 * 54.85957 * 14 13 12 16 16 C 1.53041 * 109.53602 * 298.50981 * 15 14 13 17 17 H 1.09004 * 109.49124 * 301.41146 * 16 15 14 18 18 C 1.50698 * 109.49853 * 181.32019 * 16 15 14 19 19 H 1.08008 * 119.99594 * 0.15390 * 18 16 15 20 20 C 1.37874 * 120.00283 * 180.16305 * 18 16 15 21 21 N 1.31512 * 120.00075 * 179.97438 * 20 18 16 22 22 Si 1.86798 * 119.99823 * 359.97438 * 20 18 16 23 23 H 1.48498 * 109.47060 * 89.99993 * 22 20 18 24 24 H 1.48501 * 109.47347 * 209.99941 * 22 20 18 25 25 H 1.48500 * 109.47036 * 330.00067 * 22 20 18 26 26 C 1.46929 * 120.63335 * 174.69151 * 12 10 9 27 27 N 1.32774 * 119.91952 * 0.25797 * 8 7 6 28 28 N 1.28356 * 122.17809 * 359.46150 * 27 8 7 29 29 H 1.08997 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46929 * 300.00561 * 1 2 3 31 31 H 1.09001 * 109.47048 * 59.99767 * 1 2 3 32 32 H 0.96994 * 119.99922 * 179.97438 * 2 1 3 33 33 H 1.08000 * 121.01208 * 359.95468 * 6 5 3 34 34 H 1.07994 * 120.97924 * 179.97438 * 7 6 5 35 35 H 0.97010 * 120.00052 * 196.53942 * 9 8 7 36 36 H 1.08999 * 109.59073 * 246.20455 * 13 12 10 37 37 H 1.08999 * 109.58642 * 6.63432 * 13 12 10 38 38 H 1.08993 * 109.63845 * 294.86248 * 14 13 12 39 39 H 1.09003 * 109.45774 * 174.73843 * 14 13 12 40 40 H 1.08999 * 109.45986 * 178.48997 * 15 14 13 41 41 H 1.09001 * 109.46097 * 58.52883 * 15 14 13 42 42 H 0.97003 * 120.00151 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.58383 * 353.36523 * 26 12 10 44 44 H 1.08994 * 109.58878 * 113.65053 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6180 1.1672 -0.0006 6 6 4.3202 2.3785 0.0000 7 6 5.7031 2.3272 -0.0001 8 6 6.3125 1.0725 -0.0001 9 7 7.6986 0.9725 -0.0006 10 6 8.4515 2.0399 0.3312 11 8 7.9203 3.0576 0.7315 12 7 9.7929 1.9812 0.2140 13 6 10.4576 0.7243 -0.1564 14 6 11.3597 0.9884 -1.3714 15 6 12.3201 2.1349 -1.0467 16 6 11.5195 3.4065 -0.7562 17 1 10.9049 3.6549 -1.6215 18 6 12.4668 4.5426 -0.4685 19 1 13.5336 4.3755 -0.4929 20 6 11.9718 5.7952 -0.1738 21 7 12.7985 6.7866 0.0778 22 14 10.1267 6.0842 -0.1320 23 1 9.6173 5.8325 1.2399 24 1 9.8367 7.4886 -0.5178 25 1 9.4595 5.1612 -1.0849 26 6 10.6187 3.1712 0.4603 27 7 5.5667 -0.0260 -0.0052 28 7 4.2839 0.0187 -0.0001 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9500 -0.8400 0.0004 33 1 3.7985 3.3241 0.0001 34 1 6.2929 3.2319 -0.0001 35 1 8.1243 0.1342 -0.2398 36 1 11.0604 0.3695 0.6796 37 1 9.7075 -0.0241 -0.4123 38 1 10.7467 1.2597 -2.2308 39 1 11.9313 0.0893 -1.6015 40 1 12.9801 2.3076 -1.8969 41 1 12.9158 1.8731 -0.1722 42 1 12.4502 7.6678 0.2855 43 1 9.9750 4.0377 0.6114 44 1 11.2325 3.0129 1.3469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476825167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:43 Heat of formation + Delta-G solvation = 20.524552 kcal Electronic energy + Delta-G solvation = -28464.965770 eV Core-core repulsion = 24419.006277 eV Total energy + Delta-G solvation = -4045.959493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73519 -40.52843 -39.47421 -37.64771 -35.52384 -35.03660 -33.73148 -33.26628 -32.29488 -31.34621 -30.56637 -27.61518 -25.58241 -25.41413 -25.11556 -23.83376 -22.29238 -21.52178 -20.60073 -19.61096 -19.01299 -18.53843 -17.70047 -17.30189 -16.80641 -16.12219 -15.93140 -15.74014 -15.61608 -14.93224 -14.73300 -14.47813 -14.24128 -14.08634 -14.01008 -13.53593 -13.36637 -13.18560 -12.97863 -12.82172 -12.66330 -12.37847 -12.24569 -11.56526 -11.49880 -11.21278 -10.80354 -10.66056 -10.55133 -10.47567 -10.27607 -10.23418 -9.89274 -9.80650 -9.54034 -9.41153 -9.25362 -9.04526 -8.71313 -8.31609 -6.20100 -4.22541 0.23157 0.58792 2.07832 2.32122 2.74947 2.95100 3.28434 3.35243 3.43718 3.49899 3.50519 3.78413 4.18798 4.31755 4.37096 4.58544 4.81385 4.82836 4.86026 5.08612 5.10837 5.12687 5.23697 5.32240 5.41522 5.54568 5.63202 5.75897 5.80807 5.90749 5.94499 5.97418 6.20897 6.24396 6.30575 6.38156 6.51409 6.60189 6.76950 7.01043 7.05179 7.28455 7.59060 7.66053 7.75347 8.23558 8.31242 8.39116 8.83078 9.40354 10.91778 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.002849 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.101409 B = 9824.621999 C =11063.918619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.718 5.718 3 C 0.584 3.416 4 O -0.530 6.530 5 C -0.016 4.016 6 C -0.044 4.044 7 C -0.141 4.141 8 C 0.346 3.654 9 N -0.657 5.657 10 C 0.704 3.296 11 O -0.566 6.566 12 N -0.607 5.607 13 C 0.108 3.892 14 C -0.136 4.136 15 C -0.101 4.101 16 C 0.005 3.995 17 H 0.032 0.968 18 C -0.518 4.518 19 H 0.079 0.921 20 C 0.073 3.927 21 N -0.892 5.892 22 Si 0.878 3.122 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.265 1.265 26 C 0.115 3.885 27 N -0.281 5.281 28 N -0.183 5.183 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.413 0.587 33 H 0.164 0.836 34 H 0.194 0.806 35 H 0.417 0.583 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.266 0.734 43 H 0.082 0.918 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.215 -17.554 -1.219 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.369 5.369 3 C 0.367 3.633 4 O -0.404 6.404 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.172 4.172 8 C 0.109 3.891 9 N -0.308 5.308 10 C 0.405 3.595 11 O -0.443 6.443 12 N -0.342 5.342 13 C -0.015 4.015 14 C -0.175 4.175 15 C -0.139 4.139 16 C -0.015 4.015 17 H 0.050 0.950 18 C -0.556 4.556 19 H 0.097 0.903 20 C -0.130 4.130 21 N -0.529 5.529 22 Si 0.707 3.293 23 H -0.197 1.197 24 H -0.221 1.221 25 H -0.190 1.190 26 C -0.005 4.005 27 N -0.132 5.132 28 N -0.031 5.031 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.249 0.751 33 H 0.182 0.818 34 H 0.211 0.789 35 H 0.257 0.743 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.930 -17.452 -0.884 24.330 hybrid contribution -0.418 0.874 0.035 0.969 sum -17.347 -16.578 -0.849 24.010 Atomic orbital electron populations 1.21619 0.78851 1.02638 1.02621 1.45617 1.07940 1.08908 1.74483 1.17497 0.85109 0.84185 0.76497 1.90816 1.68675 1.31214 1.49738 1.22496 0.95792 0.92256 1.06044 1.22377 0.93614 0.99639 0.91694 1.23223 0.95088 1.00548 0.98303 1.19891 0.85516 0.92047 0.91647 1.42549 1.02674 1.16202 1.69351 1.15844 0.82275 0.82466 0.78888 1.90793 1.70762 1.30677 1.52052 1.47854 1.02916 1.13509 1.69902 1.21843 0.96142 0.84796 0.98716 1.22073 0.98465 1.00044 0.96868 1.21450 0.97137 0.93961 1.01337 1.19520 0.94385 0.94427 0.93163 0.95024 1.20923 0.94198 0.91688 1.48766 0.90312 1.25062 0.97697 0.96081 0.94168 1.69878 1.34737 1.01703 1.46602 0.87006 0.85703 0.76951 0.79594 1.19693 1.22115 1.18978 1.22772 0.92306 0.84256 1.01146 1.72998 0.99202 1.24315 1.16704 1.72964 1.00362 1.23758 1.05995 0.90232 0.91892 0.91879 0.75131 0.81839 0.78924 0.74269 0.90496 0.91500 0.91809 0.91228 0.91915 0.92263 0.92367 0.90041 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.72 -6.19 5.70 -68.02 -0.39 -6.58 16 3 C 0.58 6.98 7.81 -12.30 -0.10 6.89 16 4 O -0.53 -7.72 16.39 5.32 0.09 -7.63 16 5 C -0.02 -0.20 6.83 -82.84 -0.57 -0.77 16 6 C -0.04 -0.57 9.71 -38.86 -0.38 -0.94 16 7 C -0.14 -2.00 8.91 -39.06 -0.35 -2.35 16 8 C 0.35 4.82 7.63 -154.60 -1.18 3.65 16 9 N -0.66 -8.67 5.31 -15.72 -0.08 -8.75 16 10 C 0.70 11.75 8.16 -86.92 -0.71 11.04 16 11 O -0.57 -11.29 12.53 5.30 0.07 -11.22 16 12 N -0.61 -9.92 2.97 -178.24 -0.53 -10.45 16 13 C 0.11 1.27 6.46 -3.49 -0.02 1.25 16 14 C -0.14 -1.71 6.10 -26.39 -0.16 -1.87 16 15 C -0.10 -1.70 5.10 -26.69 -0.14 -1.84 16 16 C 0.00 0.10 1.84 -91.65 -0.17 -0.07 16 17 H 0.03 0.72 7.21 -51.93 -0.37 0.35 16 18 C -0.52 -13.54 9.15 -34.44 -0.31 -13.86 16 19 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 20 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 21 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 22 Si 0.88 21.89 24.32 -169.99 -4.13 17.76 16 23 H -0.27 -6.79 6.92 56.52 0.39 -6.40 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 26 C 0.12 2.35 5.09 -3.71 -0.02 2.33 16 27 N -0.28 -3.75 11.54 31.27 0.36 -3.39 16 28 N -0.18 -2.32 10.73 33.32 0.36 -1.96 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.41 2.93 8.18 -40.82 -0.33 2.59 16 33 H 0.16 1.86 7.71 -52.49 -0.40 1.46 16 34 H 0.19 3.09 5.28 -52.57 -0.28 2.81 16 35 H 0.42 4.24 6.28 -40.82 -0.26 3.99 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.57 5.57 -51.93 -0.29 0.28 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.08 1.88 2.35 -51.93 -0.12 1.76 16 44 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -32.97 355.09 -7.15 -40.12 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.46 Total: 5.76 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -3.55 Total: 6.57 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.49 Total: -56.71 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.15 Total: -18.85 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.13 Total: 17.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.97 -7.15 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476825167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.647 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds