Wall clock time and date at job start Tue Mar 31 2020 17:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 119.99896 * 2 1 4 4 O 1.21549 * 119.99984 * 0.02562 * 3 2 1 5 5 C 1.47910 * 119.99727 * 180.02562 * 3 2 1 6 6 C 1.40013 * 120.09968 * 180.02562 * 5 3 2 7 7 C 1.38379 * 117.97746 * 179.97438 * 6 5 3 8 8 C 1.39488 * 118.03041 * 359.97438 * 7 6 5 9 9 N 1.38969 * 120.03481 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00413 * 16.54674 * 9 8 7 11 11 O 1.21572 * 120.00126 * 5.75293 * 10 9 8 12 12 N 1.34781 * 120.00315 * 186.03467 * 10 9 8 13 13 C 1.46927 * 120.62728 * 354.40069 * 12 10 9 14 14 C 1.53621 * 108.53935 * 126.37295 * 13 12 10 15 15 C 1.53043 * 109.24284 * 54.85957 * 14 13 12 16 16 C 1.53041 * 109.53602 * 298.50981 * 15 14 13 17 17 H 1.09004 * 109.49124 * 301.41146 * 16 15 14 18 18 C 1.50698 * 109.49853 * 181.32019 * 16 15 14 19 19 H 1.08008 * 119.99594 * 0.15390 * 18 16 15 20 20 C 1.37874 * 120.00283 * 180.16305 * 18 16 15 21 21 N 1.31512 * 120.00075 * 179.97438 * 20 18 16 22 22 Si 1.86798 * 119.99823 * 359.97438 * 20 18 16 23 23 H 1.48498 * 109.47060 * 89.99993 * 22 20 18 24 24 H 1.48501 * 109.47347 * 209.99941 * 22 20 18 25 25 H 1.48500 * 109.47036 * 330.00067 * 22 20 18 26 26 C 1.46929 * 120.63335 * 174.69151 * 12 10 9 27 27 N 1.32774 * 119.91952 * 0.25797 * 8 7 6 28 28 N 1.28356 * 122.17809 * 359.46150 * 27 8 7 29 29 H 1.08997 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46929 * 300.00561 * 1 2 3 31 31 H 1.09001 * 109.47048 * 59.99767 * 1 2 3 32 32 H 0.96994 * 119.99922 * 179.97438 * 2 1 3 33 33 H 1.08000 * 121.01208 * 359.95468 * 6 5 3 34 34 H 1.07994 * 120.97924 * 179.97438 * 7 6 5 35 35 H 0.97010 * 120.00052 * 196.53942 * 9 8 7 36 36 H 1.08999 * 109.59073 * 246.20455 * 13 12 10 37 37 H 1.08999 * 109.58642 * 6.63432 * 13 12 10 38 38 H 1.08993 * 109.63845 * 294.86248 * 14 13 12 39 39 H 1.09003 * 109.45774 * 174.73843 * 14 13 12 40 40 H 1.08999 * 109.45986 * 178.48997 * 15 14 13 41 41 H 1.09001 * 109.46097 * 58.52883 * 15 14 13 42 42 H 0.97003 * 120.00151 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.58383 * 353.36523 * 26 12 10 44 44 H 1.08994 * 109.58878 * 113.65053 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6180 1.1672 -0.0006 6 6 4.3202 2.3785 0.0000 7 6 5.7031 2.3272 -0.0001 8 6 6.3125 1.0725 -0.0001 9 7 7.6986 0.9725 -0.0006 10 6 8.4515 2.0399 0.3312 11 8 7.9203 3.0576 0.7315 12 7 9.7929 1.9812 0.2140 13 6 10.4576 0.7243 -0.1564 14 6 11.3597 0.9884 -1.3714 15 6 12.3201 2.1349 -1.0467 16 6 11.5195 3.4065 -0.7562 17 1 10.9049 3.6549 -1.6215 18 6 12.4668 4.5426 -0.4685 19 1 13.5336 4.3755 -0.4929 20 6 11.9718 5.7952 -0.1738 21 7 12.7985 6.7866 0.0778 22 14 10.1267 6.0842 -0.1320 23 1 9.6173 5.8325 1.2399 24 1 9.8367 7.4886 -0.5178 25 1 9.4595 5.1612 -1.0849 26 6 10.6187 3.1712 0.4603 27 7 5.5667 -0.0260 -0.0052 28 7 4.2839 0.0187 -0.0001 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9500 -0.8400 0.0004 33 1 3.7985 3.3241 0.0001 34 1 6.2929 3.2319 -0.0001 35 1 8.1243 0.1342 -0.2398 36 1 11.0604 0.3695 0.6796 37 1 9.7075 -0.0241 -0.4123 38 1 10.7467 1.2597 -2.2308 39 1 11.9313 0.0893 -1.6015 40 1 12.9801 2.3076 -1.8969 41 1 12.9158 1.8731 -0.1722 42 1 12.4502 7.6678 0.2855 43 1 9.9750 4.0377 0.6114 44 1 11.2325 3.0129 1.3469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476825167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:41 Heat of formation + Delta-G solvation = -4.499752 kcal Electronic energy + Delta-G solvation = -28466.050905 eV Core-core repulsion = 24419.006277 eV Total energy + Delta-G solvation = -4047.044628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83013 -41.68900 -40.44401 -38.98055 -36.73055 -35.85084 -35.39059 -34.34675 -33.84762 -32.49946 -32.04453 -28.41945 -27.09946 -26.71862 -26.18793 -24.97931 -23.65870 -22.52662 -21.87293 -20.83227 -20.22736 -19.50719 -19.07089 -18.64461 -18.34049 -17.24085 -17.12920 -16.79260 -16.69187 -16.18082 -15.92435 -15.72505 -15.49761 -15.43063 -15.10411 -14.93075 -14.76327 -14.35503 -14.23105 -13.92592 -13.80940 -13.33575 -13.13643 -13.09030 -12.93928 -12.68219 -12.33023 -12.14652 -11.93515 -11.71855 -11.58777 -11.50152 -11.34638 -11.16500 -11.04971 -10.91227 -10.80517 -10.34651 -10.12852 -9.62812 -8.37459 -6.40189 -0.80607 -0.46317 0.89483 1.26143 1.29513 1.33795 1.39483 1.77186 1.93916 2.21953 2.35197 2.45971 2.82209 2.99607 3.17477 3.34602 3.63005 3.79610 3.87435 3.99875 4.09684 4.28872 4.40594 4.44288 4.46991 4.56644 4.60730 4.62478 4.68037 4.72232 4.82480 4.94281 4.95452 5.03497 5.14568 5.20226 5.25506 5.33018 5.48592 5.55330 5.65708 5.69142 6.26764 6.28598 6.50096 6.69830 6.94251 7.02708 7.23975 7.25516 8.78393 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.002849 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.101409 B = 9824.621999 C =11063.918619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.703 5.703 3 C 0.580 3.420 4 O -0.561 6.561 5 C -0.015 4.015 6 C -0.040 4.040 7 C -0.152 4.152 8 C 0.340 3.660 9 N -0.638 5.638 10 C 0.703 3.297 11 O -0.603 6.603 12 N -0.608 5.608 13 C 0.101 3.899 14 C -0.127 4.127 15 C -0.099 4.099 16 C 0.004 3.996 17 H 0.018 0.982 18 C -0.510 4.510 19 H 0.050 0.950 20 C 0.025 3.975 21 N -0.938 5.938 22 Si 0.936 3.064 23 H -0.276 1.276 24 H -0.298 1.298 25 H -0.261 1.261 26 C 0.124 3.876 27 N -0.276 5.276 28 N -0.177 5.177 29 H 0.116 0.884 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.422 0.578 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.433 0.567 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.266 0.734 43 H 0.053 0.947 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.004 -21.286 -1.644 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.354 5.354 3 C 0.364 3.636 4 O -0.439 6.439 5 C -0.164 4.164 6 C -0.069 4.069 7 C -0.183 4.183 8 C 0.103 3.897 9 N -0.290 5.290 10 C 0.405 3.595 11 O -0.482 6.482 12 N -0.343 5.343 13 C -0.020 4.020 14 C -0.165 4.165 15 C -0.137 4.137 16 C -0.016 4.016 17 H 0.036 0.964 18 C -0.549 4.549 19 H 0.068 0.932 20 C -0.174 4.174 21 N -0.578 5.578 22 Si 0.765 3.235 23 H -0.203 1.203 24 H -0.226 1.226 25 H -0.185 1.185 26 C 0.002 3.998 27 N -0.128 5.128 28 N -0.024 5.024 29 H 0.134 0.866 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.259 0.741 33 H 0.191 0.809 34 H 0.193 0.807 35 H 0.276 0.724 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.729 -21.301 -1.334 28.395 hybrid contribution 0.117 1.933 0.151 1.942 sum -18.613 -19.368 -1.183 26.888 Atomic orbital electron populations 1.21855 0.77137 1.04982 1.02221 1.45649 1.09062 1.08226 1.72426 1.17478 0.84789 0.84699 0.76682 1.90805 1.69016 1.32419 1.51658 1.22637 0.96338 0.91990 1.05435 1.22493 0.93155 1.00410 0.90823 1.23071 0.95589 1.00262 0.99414 1.19903 0.85696 0.92027 0.92106 1.42169 1.02242 1.15891 1.68740 1.15892 0.82382 0.82620 0.78638 1.90790 1.71542 1.32381 1.53515 1.47686 1.02746 1.13815 1.70004 1.22243 0.97230 0.83387 0.99121 1.22020 0.97834 0.99607 0.97013 1.21390 0.97564 0.93463 1.01300 1.19450 0.94008 0.95097 0.93024 0.96388 1.21295 0.93917 0.93159 1.46509 0.93186 1.25690 1.00745 0.96283 0.94635 1.69992 1.36324 1.02267 1.49242 0.86082 0.81898 0.76286 0.79226 1.20255 1.22605 1.18530 1.22204 0.92046 0.85271 1.00268 1.73016 0.99387 1.23807 1.16589 1.72945 1.00094 1.23629 1.05762 0.86561 0.92332 0.92229 0.74065 0.80934 0.80670 0.72367 0.88539 0.87493 0.92075 0.87180 0.92561 0.91933 0.92432 0.92878 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.70 127.77 1.37 2.18 16 2 N -0.70 -10.48 5.70 -487.39 -2.78 -13.26 16 3 C 0.58 13.00 7.81 86.81 0.68 13.68 16 4 O -0.56 -15.88 16.39 -3.87 -0.06 -15.95 16 5 C -0.01 -0.34 6.83 42.00 0.29 -0.06 16 6 C -0.04 -0.99 9.71 22.73 0.22 -0.77 16 7 C -0.15 -4.23 8.91 22.61 0.20 -4.03 16 8 C 0.34 8.81 7.63 133.05 1.01 9.83 16 9 N -0.64 -15.16 5.31 -321.91 -1.71 -16.88 16 10 C 0.70 22.30 8.16 179.05 1.46 23.76 16 11 O -0.60 -23.88 12.53 -3.94 -0.05 -23.93 16 12 N -0.61 -18.55 2.97 -836.09 -2.48 -21.03 16 13 C 0.10 1.95 6.46 86.51 0.56 2.51 16 14 C -0.13 -2.68 6.10 30.82 0.19 -2.49 16 15 C -0.10 -3.16 5.10 30.62 0.16 -3.01 16 16 C 0.00 0.17 1.84 -11.46 -0.02 0.15 16 17 H 0.02 0.82 7.21 -2.38 -0.02 0.80 16 18 C -0.51 -27.38 9.15 25.60 0.23 -27.14 16 19 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 20 C 0.03 1.44 5.45 84.65 0.46 1.90 16 21 N -0.94 -57.47 13.96 21.45 0.30 -57.17 16 22 Si 0.94 47.10 24.32 68.60 1.67 48.77 16 23 H -0.28 -13.98 6.92 99.48 0.69 -13.29 16 24 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 25 H -0.26 -12.72 6.53 99.48 0.65 -12.07 16 26 C 0.12 4.99 5.09 86.36 0.44 5.43 16 27 N -0.28 -6.69 11.54 -54.99 -0.63 -7.33 16 28 N -0.18 -4.06 10.73 -48.50 -0.52 -4.58 16 29 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.42 4.78 8.18 -92.71 -0.76 4.02 16 33 H 0.17 3.86 7.71 -2.91 -0.02 3.84 16 34 H 0.18 5.67 5.28 -4.19 -0.02 5.65 16 35 H 0.43 7.06 6.28 -92.70 -0.58 6.48 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.11 1.24 5.57 -2.39 -0.01 1.22 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.05 2.46 2.35 -2.39 -0.01 2.45 16 44 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -75.02 355.09 0.63 -74.39 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.35 Total: 15.02 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 7.25 Total: 21.94 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -7.83 Total: -120.24 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.11 Total: -39.88 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.67 Total: 48.77 kcal Total: -75.02 0.63 -74.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476825167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.887 kcal (2) G-P(sol) polarization free energy of solvation -75.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds