Wall clock time and date at job start Tue Mar 31 2020 17:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00242 * 2 1 4 4 O 1.21513 * 119.99999 * 185.06125 * 3 2 1 5 5 C 1.48131 * 119.99633 * 5.05656 * 3 2 1 6 6 C 1.40111 * 121.14571 * 200.88099 * 5 3 2 7 7 C 1.38502 * 117.82854 * 179.97438 * 6 5 3 8 8 N 1.31917 * 119.96428 * 0.02562 * 7 6 5 9 9 N 1.28275 * 122.51872 * 359.97438 * 8 7 6 10 10 C 1.31919 * 122.32803 * 359.72393 * 9 8 7 11 11 C 1.46500 * 119.99695 * 180.27569 * 2 1 3 12 12 H 1.09002 * 110.28817 * 180.70302 * 11 2 1 13 13 C 1.54259 * 110.32259 * 302.82573 * 11 2 1 14 14 C 1.54379 * 105.05748 * 118.89932 * 13 11 2 15 15 N 1.48564 * 104.59906 * 23.85305 * 14 13 11 16 16 C 1.46891 * 111.00045 * 200.96276 * 15 14 13 17 17 C 1.50698 * 109.47134 * 178.04508 * 16 15 14 18 18 O 1.21297 * 119.99792 * 357.17091 * 17 16 15 19 19 N 1.34779 * 120.00629 * 177.17491 * 17 16 15 20 20 C 1.37095 * 120.00609 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99392 * 359.97438 * 20 19 17 22 22 C 1.38942 * 120.00119 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99959 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00154 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46921 * 90.00333 * 24 22 20 26 26 H 1.48500 * 109.47355 * 210.00015 * 24 22 20 27 27 H 1.48494 * 109.47247 * 330.00235 * 24 22 20 28 28 C 1.48725 * 104.28181 * 320.57301 * 15 14 13 29 29 H 1.08996 * 109.47202 * 263.88062 * 1 2 3 30 30 H 1.09006 * 109.46707 * 23.87909 * 1 2 3 31 31 H 1.08999 * 109.47192 * 143.87318 * 1 2 3 32 32 H 1.08001 * 121.08489 * 359.97438 * 6 5 3 33 33 H 1.07996 * 120.01956 * 179.97438 * 7 6 5 34 34 H 1.08004 * 120.17718 * 180.27821 * 10 9 8 35 35 H 1.08999 * 110.32431 * 237.79024 * 13 11 2 36 36 H 1.08997 * 110.32762 * 359.90543 * 13 11 2 37 37 H 1.09004 * 110.41199 * 142.63062 * 14 13 11 38 38 H 1.08998 * 110.41107 * 265.07351 * 14 13 11 39 39 H 1.09004 * 109.47583 * 298.04059 * 16 15 14 40 40 H 1.09001 * 109.47720 * 58.04713 * 16 15 14 41 41 H 0.97005 * 119.99216 * 359.97438 * 19 17 16 42 42 H 0.96996 * 120.00161 * 179.97438 * 23 22 20 43 43 H 1.09000 * 110.39137 * 280.63965 * 28 15 14 44 44 H 1.08996 * 110.50266 * 158.14523 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3506 1.1692 -0.0928 5 6 1.4026 2.4475 0.1131 6 6 1.9782 3.6540 -0.3067 7 6 1.2281 4.8103 -0.1699 8 7 0.0139 4.7512 0.3424 9 7 -0.5188 3.6501 0.7286 10 6 0.1079 2.4929 0.6367 11 6 2.1975 -1.2688 -0.0061 12 1 3.2718 -1.0850 0.0073 13 6 1.7862 -2.1306 1.2053 14 6 1.1847 -3.4159 0.5974 15 7 1.7901 -3.5088 -0.7561 16 6 0.9810 -4.3613 -1.6372 17 6 1.5989 -4.3928 -3.0114 18 8 2.5841 -3.7264 -3.2488 19 7 1.0567 -5.1615 -3.9767 20 6 1.6185 -5.1898 -5.2269 21 1 2.4954 -4.5958 -5.4384 22 6 1.0592 -5.9819 -6.2221 23 7 1.5975 -6.0086 -7.4207 24 14 -0.4577 -7.0087 -5.8564 25 1 -1.6767 -6.2130 -6.1502 26 1 -0.4463 -8.2280 -6.7040 27 1 -0.4562 -7.4014 -4.4243 28 6 1.8119 -2.1046 -1.2455 29 1 -0.3633 -0.1095 1.0218 30 1 -0.3633 0.9398 -0.4160 31 1 -0.3633 -0.8300 -0.6059 32 1 2.9742 3.6815 -0.7234 33 1 1.6373 5.7598 -0.4817 34 1 -0.3755 1.5859 0.9686 35 1 2.6589 -2.3715 1.8123 36 1 1.0407 -1.6090 1.8054 37 1 1.4586 -4.2842 1.1968 38 1 0.1006 -3.3303 0.5239 39 1 0.9451 -5.3725 -1.2318 40 1 -0.0303 -3.9599 -1.7028 41 1 0.2690 -5.6947 -3.7867 42 1 1.2073 -6.5618 -8.1153 43 1 0.8261 -1.8136 -1.6085 44 1 2.5578 -1.9856 -2.0313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494852137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:40 Heat of formation + Delta-G solvation = 44.517900 kcal Electronic energy + Delta-G solvation = -28343.340237 eV Core-core repulsion = 24298.421174 eV Total energy + Delta-G solvation = -4044.919063 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82163 -40.34470 -39.03898 -37.76939 -35.80734 -34.06035 -33.70914 -33.14257 -31.78094 -31.27797 -28.86644 -27.81739 -27.03948 -25.59181 -24.90415 -24.07028 -21.76336 -21.32039 -19.82062 -19.42056 -18.69711 -18.29280 -17.74893 -17.11194 -16.84953 -16.14678 -15.89450 -15.52794 -15.38293 -15.08566 -14.99750 -14.58964 -14.33661 -14.14262 -13.88905 -13.67408 -13.46186 -13.07418 -12.77968 -12.56488 -12.47899 -12.37810 -11.95636 -11.76124 -11.53775 -11.38778 -11.25290 -11.10884 -10.94681 -10.72822 -10.67057 -10.63653 -10.49885 -10.01796 -9.99118 -9.60832 -9.08320 -8.68563 -8.25950 -8.17078 -6.35215 -3.87004 -0.12137 0.36465 2.26966 2.39092 2.98464 3.02252 3.11411 3.12558 3.56455 3.66257 3.72513 3.91525 3.94536 4.04482 4.06225 4.36426 4.43863 4.51597 4.55801 4.72419 4.80308 4.85636 4.92144 5.04927 5.11656 5.16457 5.23880 5.27770 5.30328 5.47477 5.56184 5.59269 5.64949 5.68286 5.82279 5.83495 5.90855 6.11145 6.37162 6.84570 6.92468 6.98921 7.53157 7.61693 8.09648 8.15161 8.54866 8.90566 9.37379 9.77254 10.77811 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.002501 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.406908 B =11192.484855 C =11739.721773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.596 5.596 3 C 0.563 3.437 4 O -0.517 6.517 5 C -0.130 4.130 6 C -0.058 4.058 7 C 0.039 3.961 8 N -0.230 5.230 9 N -0.244 5.244 10 C 0.046 3.954 11 C 0.134 3.866 12 H 0.116 0.884 13 C -0.132 4.132 14 C 0.029 3.971 15 N -0.484 5.484 16 C 0.033 3.967 17 C 0.451 3.549 18 O -0.561 6.561 19 N -0.589 5.589 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.029 3.971 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.197 0.803 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.044 0.956 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.396 13.509 19.226 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.328 5.328 3 C 0.349 3.651 4 O -0.392 6.392 5 C -0.144 4.144 6 C -0.088 4.088 7 C -0.125 4.125 8 N -0.072 5.072 9 N -0.085 5.085 10 C -0.118 4.118 11 C 0.030 3.970 12 H 0.134 0.866 13 C -0.171 4.171 14 C -0.099 4.099 15 N -0.208 5.208 16 C -0.099 4.099 17 C 0.236 3.764 18 O -0.442 6.442 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.100 4.100 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.181 0.819 33 H 0.199 0.801 34 H 0.213 0.787 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.918 14.426 19.237 24.763 hybrid contribution -0.893 -1.512 -0.472 1.818 sum -6.811 12.914 18.765 23.776 Atomic orbital electron populations 1.22551 0.79957 1.04544 1.02276 1.47762 1.06903 1.05799 1.72379 1.17956 0.87001 0.82931 0.77214 1.90828 1.13145 1.86673 1.48592 1.21219 0.96130 0.95698 1.01389 1.22676 1.01556 0.91302 0.93225 1.24424 0.92095 0.99874 0.96124 1.72885 1.09886 1.19257 1.05167 1.73148 1.28882 0.94856 1.11622 1.25652 0.91754 1.00051 0.94337 1.22070 0.98446 0.81188 0.95248 0.86571 1.22661 1.01775 0.95376 0.97241 1.23186 0.96806 0.98285 0.91634 1.65191 1.46523 1.08194 1.00908 1.22110 0.94843 0.99143 0.93796 1.19585 0.86979 0.84476 0.85346 1.90536 1.27033 1.45036 1.81637 1.42196 1.27858 1.41455 1.11351 1.19423 1.13125 1.26553 0.84274 0.86253 1.25044 0.98201 0.97711 0.95194 1.69620 1.40311 1.39757 1.02307 0.86675 0.83342 0.80885 0.78505 1.19674 1.20115 1.19465 1.23625 1.02164 0.87014 0.97171 0.91088 0.89445 0.89917 0.81865 0.80137 0.78726 0.89905 0.90759 0.89701 0.93913 0.88861 0.93177 0.79718 0.91567 0.93775 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.33 7.76 59.85 0.46 0.79 16 2 N -0.60 -5.97 2.80 -173.35 -0.48 -6.46 16 3 C 0.56 6.44 7.57 -12.20 -0.09 6.35 16 4 O -0.52 -7.69 16.04 5.35 0.09 -7.61 16 5 C -0.13 -1.21 5.62 -104.57 -0.59 -1.80 16 6 C -0.06 -0.47 9.78 -38.78 -0.38 -0.84 16 7 C 0.04 0.29 11.30 -17.42 -0.20 0.09 16 8 N -0.23 -2.34 11.48 30.53 0.35 -1.99 16 9 N -0.24 -2.51 11.49 30.78 0.35 -2.16 16 10 C 0.05 0.38 8.92 -16.95 -0.15 0.23 16 11 C 0.13 1.58 3.45 -66.55 -0.23 1.35 16 12 H 0.12 1.63 6.98 -51.93 -0.36 1.27 16 13 C -0.13 -1.22 6.47 -25.35 -0.16 -1.38 16 14 C 0.03 0.30 6.50 -2.18 -0.01 0.28 16 15 N -0.48 -7.15 5.21 -231.27 -1.21 -8.36 16 16 C 0.03 0.52 5.36 -4.98 -0.03 0.49 16 17 C 0.45 9.87 7.57 -10.99 -0.08 9.79 16 18 O -0.56 -14.51 13.73 5.54 0.08 -14.44 16 19 N -0.59 -13.66 5.09 -10.96 -0.06 -13.72 16 20 C -0.31 -8.48 10.16 -14.94 -0.15 -8.64 16 21 H 0.12 3.81 7.39 -52.48 -0.39 3.43 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.46 13.96 55.50 0.77 -24.69 16 24 Si 0.88 18.97 27.74 -169.99 -4.71 14.26 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 28 C 0.03 0.42 5.14 -2.09 -0.01 0.41 16 29 H 0.07 0.29 6.82 -51.93 -0.35 -0.06 16 30 H 0.09 0.53 4.85 -51.93 -0.25 0.28 16 31 H 0.08 0.58 6.32 -51.93 -0.33 0.25 16 32 H 0.16 1.12 7.92 -52.49 -0.42 0.70 16 33 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.20 1.08 4.21 -52.48 -0.22 0.86 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.54 7.03 -51.93 -0.37 0.17 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.37 7.94 -51.93 -0.41 -0.04 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.05 0.67 7.98 -51.93 -0.41 0.26 16 41 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.04 0.62 5.98 -51.93 -0.31 0.31 16 44 H 0.12 2.21 6.39 -51.93 -0.33 1.88 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -35.69 355.75 -6.43 -42.12 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.25 Total: 9.53 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -1.72 Total: 8.15 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.27 Total: -57.37 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.16 Total: -22.04 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.69 -6.43 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494852137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.633 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds