Wall clock time and date at job start Tue Mar 31 2020 17:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00242 * 2 1 4 4 O 1.21513 * 119.99999 * 185.06125 * 3 2 1 5 5 C 1.48131 * 119.99633 * 5.05656 * 3 2 1 6 6 C 1.40111 * 121.14571 * 200.88099 * 5 3 2 7 7 C 1.38502 * 117.82854 * 179.97438 * 6 5 3 8 8 N 1.31917 * 119.96428 * 0.02562 * 7 6 5 9 9 N 1.28275 * 122.51872 * 359.97438 * 8 7 6 10 10 C 1.31919 * 122.32803 * 359.72393 * 9 8 7 11 11 C 1.46500 * 119.99695 * 180.27569 * 2 1 3 12 12 H 1.09002 * 110.28817 * 180.70302 * 11 2 1 13 13 C 1.54259 * 110.32259 * 302.82573 * 11 2 1 14 14 C 1.54379 * 105.05748 * 118.89932 * 13 11 2 15 15 N 1.48564 * 104.59906 * 23.85305 * 14 13 11 16 16 C 1.46891 * 111.00045 * 200.96276 * 15 14 13 17 17 C 1.50698 * 109.47134 * 178.04508 * 16 15 14 18 18 O 1.21297 * 119.99792 * 357.17091 * 17 16 15 19 19 N 1.34779 * 120.00629 * 177.17491 * 17 16 15 20 20 C 1.37095 * 120.00609 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99392 * 359.97438 * 20 19 17 22 22 C 1.38942 * 120.00119 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99959 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00154 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46921 * 90.00333 * 24 22 20 26 26 H 1.48500 * 109.47355 * 210.00015 * 24 22 20 27 27 H 1.48494 * 109.47247 * 330.00235 * 24 22 20 28 28 C 1.48725 * 104.28181 * 320.57301 * 15 14 13 29 29 H 1.08996 * 109.47202 * 263.88062 * 1 2 3 30 30 H 1.09006 * 109.46707 * 23.87909 * 1 2 3 31 31 H 1.08999 * 109.47192 * 143.87318 * 1 2 3 32 32 H 1.08001 * 121.08489 * 359.97438 * 6 5 3 33 33 H 1.07996 * 120.01956 * 179.97438 * 7 6 5 34 34 H 1.08004 * 120.17718 * 180.27821 * 10 9 8 35 35 H 1.08999 * 110.32431 * 237.79024 * 13 11 2 36 36 H 1.08997 * 110.32762 * 359.90543 * 13 11 2 37 37 H 1.09004 * 110.41199 * 142.63062 * 14 13 11 38 38 H 1.08998 * 110.41107 * 265.07351 * 14 13 11 39 39 H 1.09004 * 109.47583 * 298.04059 * 16 15 14 40 40 H 1.09001 * 109.47720 * 58.04713 * 16 15 14 41 41 H 0.97005 * 119.99216 * 359.97438 * 19 17 16 42 42 H 0.96996 * 120.00161 * 179.97438 * 23 22 20 43 43 H 1.09000 * 110.39137 * 280.63965 * 28 15 14 44 44 H 1.08996 * 110.50266 * 158.14523 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3506 1.1692 -0.0928 5 6 1.4026 2.4475 0.1131 6 6 1.9782 3.6540 -0.3067 7 6 1.2281 4.8103 -0.1699 8 7 0.0139 4.7512 0.3424 9 7 -0.5188 3.6501 0.7286 10 6 0.1079 2.4929 0.6367 11 6 2.1975 -1.2688 -0.0061 12 1 3.2718 -1.0850 0.0073 13 6 1.7862 -2.1306 1.2053 14 6 1.1847 -3.4159 0.5974 15 7 1.7901 -3.5088 -0.7561 16 6 0.9810 -4.3613 -1.6372 17 6 1.5989 -4.3928 -3.0114 18 8 2.5841 -3.7264 -3.2488 19 7 1.0567 -5.1615 -3.9767 20 6 1.6185 -5.1898 -5.2269 21 1 2.4954 -4.5958 -5.4384 22 6 1.0592 -5.9819 -6.2221 23 7 1.5975 -6.0086 -7.4207 24 14 -0.4577 -7.0087 -5.8564 25 1 -1.6767 -6.2130 -6.1502 26 1 -0.4463 -8.2280 -6.7040 27 1 -0.4562 -7.4014 -4.4243 28 6 1.8119 -2.1046 -1.2455 29 1 -0.3633 -0.1095 1.0218 30 1 -0.3633 0.9398 -0.4160 31 1 -0.3633 -0.8300 -0.6059 32 1 2.9742 3.6815 -0.7234 33 1 1.6373 5.7598 -0.4817 34 1 -0.3755 1.5859 0.9686 35 1 2.6589 -2.3715 1.8123 36 1 1.0407 -1.6090 1.8054 37 1 1.4586 -4.2842 1.1968 38 1 0.1006 -3.3303 0.5239 39 1 0.9451 -5.3725 -1.2318 40 1 -0.0303 -3.9599 -1.7028 41 1 0.2690 -5.6947 -3.7867 42 1 1.2073 -6.5618 -8.1153 43 1 0.8261 -1.8136 -1.6085 44 1 2.5578 -1.9856 -2.0313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494852137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:36 Heat of formation + Delta-G solvation = 14.172391 kcal Electronic energy + Delta-G solvation = -28344.656117 eV Core-core repulsion = 24298.421174 eV Total energy + Delta-G solvation = -4046.234943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53657 -41.25326 -40.41644 -39.10882 -36.74750 -35.96388 -34.50119 -33.86874 -33.74147 -32.31404 -29.75412 -28.68913 -28.28668 -26.57305 -25.63959 -25.53536 -22.69402 -22.27923 -21.28193 -20.67076 -20.18626 -19.41556 -18.46594 -17.79668 -17.73230 -17.62306 -16.86334 -16.73681 -16.59320 -16.29911 -15.81223 -15.68948 -15.59642 -15.17111 -14.93009 -14.67948 -14.58947 -14.26657 -14.21007 -13.96537 -13.72444 -13.19404 -13.11407 -12.99563 -12.77551 -12.43204 -12.35345 -12.31286 -11.98772 -11.91707 -11.83993 -11.57977 -11.49394 -11.39138 -11.15009 -10.74142 -10.38699 -10.25739 -9.88732 -9.37898 -8.42086 -6.03396 -0.82948 -0.23625 1.29587 1.35120 1.43202 1.44602 1.59499 1.94962 2.22673 2.45506 2.68516 2.94190 3.03374 3.14066 3.26068 3.30008 3.44524 3.56170 3.70735 3.75766 3.96598 4.01799 4.15329 4.28546 4.29923 4.30748 4.39223 4.41095 4.50893 4.52141 4.65277 4.68997 4.77350 4.91311 4.96377 5.02178 5.10211 5.15001 5.29634 5.51754 5.82741 5.90555 6.02997 6.05772 6.58726 6.76545 6.87885 7.38761 7.49643 7.96951 8.75779 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.002501 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.406908 B =11192.484855 C =11739.721773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.591 5.591 3 C 0.559 3.441 4 O -0.565 6.565 5 C -0.142 4.142 6 C -0.059 4.059 7 C 0.048 3.952 8 N -0.256 5.256 9 N -0.267 5.267 10 C 0.057 3.943 11 C 0.140 3.860 12 H 0.082 0.918 13 C -0.120 4.120 14 C 0.034 3.966 15 N -0.513 5.513 16 C 0.046 3.954 17 C 0.447 3.553 18 O -0.610 6.610 19 N -0.591 5.591 20 C -0.328 4.328 21 H 0.052 0.948 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.228 1.228 28 C 0.035 3.965 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.171 0.829 33 H 0.216 0.784 34 H 0.224 0.776 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.053 0.947 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.379 12.599 22.527 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.323 5.323 3 C 0.347 3.653 4 O -0.444 6.444 5 C -0.156 4.156 6 C -0.089 4.089 7 C -0.116 4.116 8 N -0.097 5.097 9 N -0.108 5.108 10 C -0.106 4.106 11 C 0.036 3.964 12 H 0.100 0.900 13 C -0.158 4.158 14 C -0.093 4.093 15 N -0.238 5.238 16 C -0.086 4.086 17 C 0.235 3.765 18 O -0.494 6.494 19 N -0.233 5.233 20 C -0.457 4.457 21 H 0.070 0.930 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.786 3.214 25 H -0.180 1.180 26 H -0.202 1.202 27 H -0.151 1.151 28 C -0.094 4.094 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.188 0.812 33 H 0.233 0.767 34 H 0.240 0.760 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.954 13.525 22.587 28.146 hybrid contribution 0.514 -1.121 -1.544 1.976 sum -9.440 12.404 21.043 26.187 Atomic orbital electron populations 1.22883 0.77385 1.05025 1.04860 1.47818 1.08403 1.04693 1.71339 1.18304 0.86597 0.83924 0.76462 1.90804 1.15211 1.87355 1.50988 1.21134 0.96793 0.94923 1.02764 1.22915 1.01961 0.91373 0.92610 1.24898 0.91005 1.00932 0.94784 1.72804 1.11101 1.19711 1.06075 1.73096 1.29680 0.95363 1.12632 1.25979 0.90985 1.00418 0.93267 1.21776 0.97080 0.82082 0.95509 0.89955 1.22639 1.02735 0.94580 0.95888 1.23307 0.98330 0.99116 0.88562 1.65096 1.48175 1.07667 1.02912 1.22053 0.95651 1.01471 0.89380 1.20987 0.85914 0.82114 0.87471 1.90545 1.29385 1.46447 1.83053 1.42018 1.28669 1.42621 1.09983 1.18969 1.12325 1.27118 0.87268 0.93013 1.26161 1.02482 0.98743 0.94184 1.69815 1.42864 1.41116 1.03929 0.85342 0.77357 0.78081 0.80585 1.18041 1.20187 1.15124 1.23333 1.00706 0.88378 0.97005 0.87146 0.88869 0.89695 0.81186 0.76730 0.76029 0.89859 0.87512 0.88211 0.90908 0.85731 0.89514 0.77409 0.91167 0.92854 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 7.76 127.77 0.99 1.38 16 2 N -0.59 -11.14 2.80 -820.66 -2.29 -13.43 16 3 C 0.56 12.83 7.57 86.87 0.66 13.49 16 4 O -0.56 -17.77 16.04 -3.76 -0.06 -17.83 16 5 C -0.14 -2.51 5.62 -19.83 -0.11 -2.62 16 6 C -0.06 -0.91 9.78 22.79 0.22 -0.68 16 7 C 0.05 0.64 11.30 84.74 0.96 1.60 16 8 N -0.26 -4.86 11.48 -57.34 -0.66 -5.52 16 9 N -0.27 -5.07 11.49 -56.53 -0.65 -5.72 16 10 C 0.06 0.83 8.92 85.04 0.76 1.59 16 11 C 0.14 3.26 3.45 45.89 0.16 3.42 16 12 H 0.08 2.49 6.98 -2.39 -0.02 2.47 16 13 C -0.12 -1.82 6.47 31.49 0.20 -1.62 16 14 C 0.03 0.54 6.50 86.45 0.56 1.10 16 15 N -0.51 -14.22 5.21 -885.60 -4.62 -18.84 16 16 C 0.05 1.29 5.36 85.56 0.46 1.75 16 17 C 0.45 19.73 7.57 87.66 0.66 20.39 16 18 O -0.61 -33.64 13.73 -3.08 -0.04 -33.69 16 19 N -0.59 -27.30 5.09 -306.98 -1.56 -28.86 16 20 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 21 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 22 C -0.02 -0.96 5.50 84.92 0.47 -0.49 16 23 N -0.94 -56.58 13.96 21.66 0.30 -56.28 16 24 Si 0.97 38.01 27.74 68.60 1.90 39.91 16 25 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 26 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 28 C 0.03 1.03 5.14 86.42 0.44 1.48 16 29 H 0.11 0.28 6.82 -2.39 -0.02 0.26 16 30 H 0.09 0.86 4.85 -2.38 -0.01 0.85 16 31 H 0.08 0.87 6.32 -2.39 -0.02 0.85 16 32 H 0.17 2.33 7.92 -2.91 -0.02 2.31 16 33 H 0.22 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.22 1.67 4.21 -2.91 -0.01 1.66 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 0.97 7.03 -2.39 -0.02 0.95 16 37 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.07 0.79 7.94 -2.39 -0.02 0.77 16 39 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 40 H 0.09 1.87 7.98 -2.39 -0.02 1.85 16 41 H 0.39 14.64 5.76 -92.70 -0.53 14.10 16 42 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.05 1.44 5.98 -2.39 -0.01 1.42 16 44 H 0.06 2.33 6.39 -2.39 -0.02 2.31 16 Total: -1.00 -88.99 355.75 0.08 -88.91 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.48 Total: 28.84 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 7.29 Total: 22.50 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -9.48 Total: -128.65 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.10 Total: -51.51 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.90 Total: 39.91 kcal Total: -88.99 0.08 -88.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494852137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.080 kcal (2) G-P(sol) polarization free energy of solvation -88.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds