Wall clock time and date at job start Tue Mar 31 2020 17:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99968 * 2 1 4 4 C 1.53003 * 109.46971 * 269.99961 * 3 2 1 5 5 H 1.09001 * 109.46596 * 305.00187 * 4 3 2 6 6 O 1.42894 * 109.47235 * 64.99677 * 4 3 2 7 7 C 1.52996 * 109.46955 * 185.00104 * 4 3 2 8 8 N 1.46506 * 109.46693 * 179.97438 * 7 4 3 9 9 C 1.36939 * 119.99888 * 179.72156 * 8 7 4 10 10 H 1.08000 * 119.99729 * 0.27992 * 9 8 7 11 11 C 1.38810 * 120.00425 * 180.28004 * 9 8 7 12 12 N 1.31613 * 120.00510 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 119.99668 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.46726 * 89.99957 * 13 11 9 15 15 H 1.48491 * 109.46954 * 210.00047 * 13 11 9 16 16 H 1.48500 * 109.46966 * 330.00186 * 13 11 9 17 17 C 1.34776 * 119.99827 * 179.97438 * 2 1 3 18 18 O 1.21590 * 119.99818 * 175.37878 * 17 2 1 19 19 C 1.47538 * 120.00192 * 355.37991 * 17 2 1 20 20 C 1.39410 * 120.75500 * 56.10690 * 19 17 2 21 21 N 1.31913 * 121.01588 * 179.66168 * 20 19 17 22 22 C 1.31783 * 122.60185 * 0.65791 * 21 20 19 23 23 C 1.39442 * 120.63101 * 359.65406 * 22 21 20 24 24 N 1.35704 * 134.42937 * 180.02562 * 23 22 21 25 25 C 1.30131 * 109.50103 * 179.97438 * 24 23 22 26 26 N 1.36268 * 110.05770 * 0.02562 * 25 24 23 27 27 C 1.46490 * 126.29658 * 179.97438 * 26 25 24 28 28 C 1.36918 * 107.40092 * 359.97438 * 26 25 24 29 29 H 1.08995 * 109.47063 * 95.09023 * 1 2 3 30 30 H 1.09002 * 109.47015 * 215.09505 * 1 2 3 31 31 H 1.09000 * 109.47114 * 335.08821 * 1 2 3 32 32 H 1.08998 * 109.47350 * 149.99850 * 3 2 1 33 33 H 1.09003 * 109.47477 * 29.99609 * 3 2 1 34 34 H 0.96707 * 114.00018 * 60.00029 * 6 4 3 35 35 H 1.08998 * 109.47441 * 60.00369 * 7 4 3 36 36 H 1.08993 * 109.47663 * 299.99727 * 7 4 3 37 37 H 0.96996 * 119.99977 * 0.02562 * 8 7 4 38 38 H 0.96998 * 120.00561 * 179.97438 * 12 11 9 39 39 H 1.08006 * 119.48773 * 359.97438 * 20 19 17 40 40 H 1.08002 * 119.68792 * 179.63529 * 22 21 20 41 41 H 1.07998 * 124.97505 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47428 * 263.43746 * 27 26 25 43 43 H 1.09000 * 109.47402 * 23.44354 * 27 26 25 44 44 H 1.09004 * 109.47057 * 143.43844 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9130 -1.9815 6 8 1.2061 1.9934 -2.0814 7 6 3.3238 2.9680 -1.4444 8 7 3.5685 3.3905 -2.8257 9 6 4.3244 4.5043 -3.0773 10 1 4.7439 5.0686 -2.2576 11 6 4.5514 4.9080 -4.3859 12 7 5.2783 5.9782 -4.6278 13 14 3.8262 3.9314 -5.8037 14 1 2.4806 4.4649 -6.1350 15 1 4.7115 4.0497 -6.9900 16 1 3.7102 2.5035 -5.4129 17 6 2.1389 -1.1672 0.0005 18 8 3.3518 -1.1690 -0.0843 19 6 1.4048 -2.4428 0.1040 20 6 0.4031 -2.7651 -0.8104 21 7 -0.2520 -3.9070 -0.7267 22 6 -0.0139 -4.7945 0.2180 23 6 0.9652 -4.5600 1.1827 24 7 1.4331 -5.2554 2.2500 25 6 2.3749 -4.5732 2.8340 26 7 2.5726 -3.3944 2.1795 27 6 3.5451 -2.3580 2.5344 28 6 1.6950 -3.3570 1.1292 29 1 -0.3633 -0.0912 -1.0236 30 1 -0.3633 -0.8409 0.5909 31 1 -0.3633 0.9320 0.4329 32 1 3.1499 1.1384 0.5138 33 1 1.6085 2.0284 0.5138 34 1 0.6955 2.6949 -1.6543 35 1 4.2746 2.7521 -0.9571 36 1 2.8122 3.7653 -0.9054 37 1 3.1913 2.8838 -3.5618 38 1 5.4372 6.2601 -5.5422 39 1 0.1632 -2.0712 -1.6026 40 1 -0.5828 -5.7121 0.2454 41 1 2.9200 -4.8942 3.7093 42 1 3.0544 -1.5875 3.1290 43 1 4.3551 -2.8025 3.1128 44 1 3.9498 -1.9128 1.6254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507486375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:22 Heat of formation + Delta-G solvation = 33.869663 kcal Electronic energy + Delta-G solvation = -28723.127588 eV Core-core repulsion = 24677.746782 eV Total energy + Delta-G solvation = -4045.380806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.90758 -40.34343 -38.79312 -37.70308 -35.51183 -34.67414 -34.19522 -32.29596 -31.48877 -30.54139 -29.73029 -27.67384 -27.14914 -26.11532 -24.49813 -23.37626 -22.77146 -21.68025 -21.33509 -19.64963 -18.32230 -17.99784 -17.75577 -17.40456 -16.74614 -16.50489 -16.24425 -15.90325 -15.33684 -15.30564 -14.78117 -14.46078 -14.44504 -14.29092 -13.91612 -13.62362 -13.57992 -13.23889 -13.08978 -12.99092 -12.75144 -12.45573 -12.36707 -12.25558 -11.76975 -11.27015 -11.01290 -10.97229 -10.86031 -10.82183 -10.62291 -10.24784 -10.01024 -9.77519 -9.59754 -9.39608 -8.92999 -8.81800 -8.68625 -7.25334 -5.78018 -3.13786 0.08861 0.96075 2.03735 2.09270 2.34982 2.63535 3.41094 3.41224 3.47200 3.47898 3.64730 3.85422 4.01638 4.25797 4.28037 4.50436 4.55051 4.60552 4.61488 4.73347 4.75620 4.82617 4.95077 5.00431 5.17511 5.22920 5.28482 5.42477 5.47985 5.50361 5.54291 5.60376 5.80044 5.81184 5.82038 6.01684 6.17805 6.40114 6.49093 6.56606 6.96787 7.18036 7.55049 7.75242 7.81563 7.97950 8.40789 9.20603 9.92976 10.12987 11.40057 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.002657 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.532851 B =10535.272649 C =11037.788002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.596 5.596 3 C 0.087 3.913 4 C 0.082 3.918 5 H 0.102 0.898 6 O -0.554 6.554 7 C 0.132 3.868 8 N -0.749 5.749 9 C -0.247 4.247 10 H 0.089 0.911 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.887 3.113 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.276 1.276 17 C 0.563 3.437 18 O -0.528 6.528 19 C -0.167 4.167 20 C 0.137 3.863 21 N -0.485 5.485 22 C 0.192 3.808 23 C -0.014 4.014 24 N -0.477 5.477 25 C 0.263 3.737 26 N -0.479 5.479 27 C 0.054 3.946 28 C 0.114 3.886 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.370 0.630 35 H 0.035 0.965 36 H 0.028 0.972 37 H 0.367 0.633 38 H 0.260 0.740 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.221 0.779 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.748 -20.435 19.061 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.327 5.327 3 C -0.036 4.036 4 C 0.021 3.979 5 H 0.120 0.880 6 O -0.358 6.358 7 C 0.003 3.997 8 N -0.395 5.395 9 C -0.377 4.377 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.582 5.582 13 Si 0.717 3.283 14 H -0.210 1.210 15 H -0.218 1.218 16 H -0.202 1.202 17 C 0.350 3.650 18 O -0.406 6.406 19 C -0.175 4.175 20 C -0.015 4.015 21 N -0.195 5.195 22 C 0.026 3.974 23 C -0.134 4.134 24 N -0.196 5.196 25 C -0.023 4.023 26 N -0.166 5.166 27 C -0.087 4.087 28 C -0.006 4.006 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.217 0.783 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.200 0.800 38 H 0.070 0.930 39 H 0.187 0.813 40 H 0.187 0.813 41 H 0.237 0.763 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.593 -21.481 18.291 30.502 hybrid contribution 0.505 0.912 -0.174 1.057 sum -11.088 -20.569 18.117 29.568 Atomic orbital electron populations 1.21958 0.78751 1.03053 1.02766 1.47679 1.07465 1.05502 1.72099 1.22316 0.98393 0.84174 0.98671 1.22605 0.85231 0.98284 0.91757 0.88048 1.86590 1.32368 1.59313 1.57541 1.21178 0.96793 0.92957 0.88774 1.42570 1.63134 1.32523 1.01297 1.19032 1.23817 1.01230 0.93627 0.89329 1.24664 0.99845 0.97527 0.96989 1.69701 1.43180 1.25704 1.19569 0.86503 0.78769 0.80101 0.82915 1.20983 1.21773 1.20241 1.18047 0.86970 0.83258 0.76713 1.90743 1.13437 1.87085 1.49295 1.19768 1.02630 0.96246 0.98880 1.22830 0.88925 0.93711 0.95989 1.67734 1.27014 1.02624 1.22080 1.22321 0.91244 0.97598 0.86201 1.20134 1.01687 0.92657 0.98965 1.70491 1.11781 1.29564 1.07770 1.25633 0.96160 0.81972 0.98516 1.45217 1.30295 1.18377 1.22750 1.22586 0.91097 0.89926 1.05131 1.18626 0.93757 0.97105 0.91070 0.91222 0.91592 0.90495 0.88734 0.89583 0.78328 0.94739 0.95381 0.80000 0.93018 0.81321 0.81266 0.76256 0.90694 0.88835 0.86636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 8.86 59.85 0.53 1.11 16 2 N -0.60 -6.17 2.84 -182.80 -0.52 -6.69 16 3 C 0.09 0.95 5.07 -4.04 -0.02 0.93 16 4 C 0.08 1.20 3.30 -26.73 -0.09 1.11 16 5 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 6 O -0.55 -7.90 12.64 -35.23 -0.45 -8.34 16 7 C 0.13 2.42 5.92 -4.04 -0.02 2.39 16 8 N -0.75 -18.07 5.30 -59.91 -0.32 -18.39 16 9 C -0.25 -7.09 10.47 -15.06 -0.16 -7.25 16 10 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 11 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 12 N -0.93 -29.64 13.97 55.49 0.78 -28.86 16 13 Si 0.89 22.86 27.74 -169.99 -4.71 18.15 16 14 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 16 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 17 C 0.56 6.94 6.49 -12.47 -0.08 6.86 16 18 O -0.53 -8.03 13.91 5.29 0.07 -7.95 16 19 C -0.17 -1.89 4.64 -104.86 -0.49 -2.38 16 20 C 0.14 1.44 9.21 -17.08 -0.16 1.28 16 21 N -0.49 -5.17 10.30 -12.65 -0.13 -5.30 16 22 C 0.19 1.89 11.25 -17.12 -0.19 1.70 16 23 C -0.01 -0.15 7.27 -84.73 -0.62 -0.77 16 24 N -0.48 -4.90 11.28 -12.00 -0.14 -5.04 16 25 C 0.26 1.98 12.50 -89.55 -1.12 0.86 16 26 N -0.48 -4.31 3.18 -122.88 -0.39 -4.70 16 27 C 0.05 0.38 10.59 59.84 0.63 1.01 16 28 C 0.11 1.28 6.83 -83.81 -0.57 0.71 16 29 H 0.07 0.53 7.43 -51.93 -0.39 0.14 16 30 H 0.07 0.47 6.52 -51.93 -0.34 0.13 16 31 H 0.08 0.44 7.84 -51.93 -0.41 0.04 16 32 H 0.09 1.09 7.49 -51.93 -0.39 0.70 16 33 H 0.09 0.71 7.86 -51.93 -0.41 0.31 16 34 H 0.37 4.00 9.05 45.56 0.41 4.41 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.37 8.96 5.41 -40.82 -0.22 8.73 16 38 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 39 H 0.17 1.54 7.04 -52.48 -0.37 1.17 16 40 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.22 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.37 8.13 -51.93 -0.42 -0.05 16 44 H 0.12 1.17 4.91 -51.93 -0.25 0.91 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -37.90 366.51 -7.64 -45.54 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.91 Total: 8.40 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -2.45 Total: 7.66 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -0.72 Total: -68.98 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.37 Total: -16.29 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.71 Total: 18.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.90 -7.64 -45.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507486375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.412 kcal (2) G-P(sol) polarization free energy of solvation -37.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds