Wall clock time and date at job start Tue Mar 31 2020 17:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99968 * 2 1 4 4 C 1.53003 * 109.46971 * 269.99961 * 3 2 1 5 5 H 1.09001 * 109.46596 * 305.00187 * 4 3 2 6 6 O 1.42894 * 109.47235 * 64.99677 * 4 3 2 7 7 C 1.52996 * 109.46955 * 185.00104 * 4 3 2 8 8 N 1.46506 * 109.46693 * 179.97438 * 7 4 3 9 9 C 1.36939 * 119.99888 * 179.72156 * 8 7 4 10 10 H 1.08000 * 119.99729 * 0.27992 * 9 8 7 11 11 C 1.38810 * 120.00425 * 180.28004 * 9 8 7 12 12 N 1.31613 * 120.00510 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 119.99668 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.46726 * 89.99957 * 13 11 9 15 15 H 1.48491 * 109.46954 * 210.00047 * 13 11 9 16 16 H 1.48500 * 109.46966 * 330.00186 * 13 11 9 17 17 C 1.34776 * 119.99827 * 179.97438 * 2 1 3 18 18 O 1.21590 * 119.99818 * 175.37878 * 17 2 1 19 19 C 1.47538 * 120.00192 * 355.37991 * 17 2 1 20 20 C 1.39410 * 120.75500 * 56.10690 * 19 17 2 21 21 N 1.31913 * 121.01588 * 179.66168 * 20 19 17 22 22 C 1.31783 * 122.60185 * 0.65791 * 21 20 19 23 23 C 1.39442 * 120.63101 * 359.65406 * 22 21 20 24 24 N 1.35704 * 134.42937 * 180.02562 * 23 22 21 25 25 C 1.30131 * 109.50103 * 179.97438 * 24 23 22 26 26 N 1.36268 * 110.05770 * 0.02562 * 25 24 23 27 27 C 1.46490 * 126.29658 * 179.97438 * 26 25 24 28 28 C 1.36918 * 107.40092 * 359.97438 * 26 25 24 29 29 H 1.08995 * 109.47063 * 95.09023 * 1 2 3 30 30 H 1.09002 * 109.47015 * 215.09505 * 1 2 3 31 31 H 1.09000 * 109.47114 * 335.08821 * 1 2 3 32 32 H 1.08998 * 109.47350 * 149.99850 * 3 2 1 33 33 H 1.09003 * 109.47477 * 29.99609 * 3 2 1 34 34 H 0.96707 * 114.00018 * 60.00029 * 6 4 3 35 35 H 1.08998 * 109.47441 * 60.00369 * 7 4 3 36 36 H 1.08993 * 109.47663 * 299.99727 * 7 4 3 37 37 H 0.96996 * 119.99977 * 0.02562 * 8 7 4 38 38 H 0.96998 * 120.00561 * 179.97438 * 12 11 9 39 39 H 1.08006 * 119.48773 * 359.97438 * 20 19 17 40 40 H 1.08002 * 119.68792 * 179.63529 * 22 21 20 41 41 H 1.07998 * 124.97505 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47428 * 263.43746 * 27 26 25 43 43 H 1.09000 * 109.47402 * 23.44354 * 27 26 25 44 44 H 1.09004 * 109.47057 * 143.43844 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9130 -1.9815 6 8 1.2061 1.9934 -2.0814 7 6 3.3238 2.9680 -1.4444 8 7 3.5685 3.3905 -2.8257 9 6 4.3244 4.5043 -3.0773 10 1 4.7439 5.0686 -2.2576 11 6 4.5514 4.9080 -4.3859 12 7 5.2783 5.9782 -4.6278 13 14 3.8262 3.9314 -5.8037 14 1 2.4806 4.4649 -6.1350 15 1 4.7115 4.0497 -6.9900 16 1 3.7102 2.5035 -5.4129 17 6 2.1389 -1.1672 0.0005 18 8 3.3518 -1.1690 -0.0843 19 6 1.4048 -2.4428 0.1040 20 6 0.4031 -2.7651 -0.8104 21 7 -0.2520 -3.9070 -0.7267 22 6 -0.0139 -4.7945 0.2180 23 6 0.9652 -4.5600 1.1827 24 7 1.4331 -5.2554 2.2500 25 6 2.3749 -4.5732 2.8340 26 7 2.5726 -3.3944 2.1795 27 6 3.5451 -2.3580 2.5344 28 6 1.6950 -3.3570 1.1292 29 1 -0.3633 -0.0912 -1.0236 30 1 -0.3633 -0.8409 0.5909 31 1 -0.3633 0.9320 0.4329 32 1 3.1499 1.1384 0.5138 33 1 1.6085 2.0284 0.5138 34 1 0.6955 2.6949 -1.6543 35 1 4.2746 2.7521 -0.9571 36 1 2.8122 3.7653 -0.9054 37 1 3.1913 2.8838 -3.5618 38 1 5.4372 6.2601 -5.5422 39 1 0.1632 -2.0712 -1.6026 40 1 -0.5828 -5.7121 0.2454 41 1 2.9200 -4.8942 3.7093 42 1 3.0544 -1.5875 3.1290 43 1 4.3551 -2.8025 3.1128 44 1 3.9498 -1.9128 1.6254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507486375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:17 Heat of formation + Delta-G solvation = 4.057221 kcal Electronic energy + Delta-G solvation = -28724.420352 eV Core-core repulsion = 24677.746782 eV Total energy + Delta-G solvation = -4046.673570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.59655 -41.22688 -39.57206 -38.88408 -36.59312 -35.90163 -35.34085 -33.53856 -33.01565 -31.43324 -30.85249 -28.35552 -28.04937 -27.27582 -25.44756 -24.24601 -24.11536 -22.92313 -22.43400 -20.46311 -19.83004 -19.06190 -18.69219 -18.22439 -17.77618 -17.38637 -16.98246 -16.82997 -16.56229 -16.35596 -16.18123 -15.70340 -15.38775 -15.11179 -15.01993 -14.77742 -14.63183 -14.41528 -14.08632 -13.83367 -13.73911 -13.60801 -13.32390 -13.29783 -13.03752 -12.85232 -12.62448 -12.30675 -11.98146 -11.87883 -11.81291 -11.62447 -11.40157 -11.20433 -11.04644 -10.62250 -10.12577 -9.70634 -9.44899 -9.33686 -8.06515 -5.39273 -0.64458 0.19533 1.26280 1.36948 1.37921 1.45841 1.46815 1.60064 1.81265 2.45118 2.64868 2.98238 3.15056 3.24613 3.33995 3.37015 3.53525 3.63940 3.70079 3.89656 3.94839 4.02176 4.07521 4.18318 4.25936 4.30588 4.32883 4.51142 4.54481 4.61743 4.65308 4.72858 4.89370 4.90864 4.92793 5.12396 5.16062 5.29821 5.38291 5.71043 5.91533 6.13460 6.17732 6.50917 6.79809 6.85786 6.89347 7.04996 7.81586 7.99119 9.14767 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.002657 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.532851 B =10535.272649 C =11037.788002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.590 5.590 3 C 0.097 3.903 4 C 0.100 3.900 5 H 0.071 0.929 6 O -0.562 6.562 7 C 0.126 3.874 8 N -0.756 5.756 9 C -0.234 4.234 10 H 0.061 0.939 11 C -0.061 4.061 12 N -0.981 5.981 13 Si 0.955 3.045 14 H -0.275 1.275 15 H -0.295 1.295 16 H -0.264 1.264 17 C 0.561 3.439 18 O -0.564 6.564 19 C -0.177 4.177 20 C 0.136 3.864 21 N -0.496 5.496 22 C 0.190 3.810 23 C -0.027 4.027 24 N -0.505 5.505 25 C 0.277 3.723 26 N -0.483 5.483 27 C 0.055 3.945 28 C 0.094 3.906 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.388 0.612 35 H 0.029 0.971 36 H 0.047 0.953 37 H 0.366 0.634 38 H 0.259 0.741 39 H 0.178 0.822 40 H 0.192 0.808 41 H 0.268 0.732 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.416 -21.878 20.569 32.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.320 5.320 3 C -0.027 4.027 4 C 0.039 3.961 5 H 0.089 0.911 6 O -0.369 6.369 7 C -0.001 4.001 8 N -0.401 5.401 9 C -0.365 4.365 10 H 0.079 0.921 11 C -0.253 4.253 12 N -0.632 5.632 13 Si 0.783 3.217 14 H -0.201 1.201 15 H -0.222 1.222 16 H -0.189 1.189 17 C 0.349 3.651 18 O -0.444 6.444 19 C -0.186 4.186 20 C -0.016 4.016 21 N -0.206 5.206 22 C 0.025 3.975 23 C -0.148 4.148 24 N -0.224 5.224 25 C -0.008 4.008 26 N -0.170 5.170 27 C -0.086 4.086 28 C -0.027 4.027 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.141 0.859 34 H 0.237 0.763 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.199 0.801 38 H 0.067 0.933 39 H 0.195 0.805 40 H 0.209 0.791 41 H 0.283 0.717 42 H 0.103 0.897 43 H 0.145 0.855 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.318 -22.941 19.849 33.130 hybrid contribution 1.044 1.349 -0.493 1.776 sum -12.274 -21.592 19.356 31.488 Atomic orbital electron populations 1.22141 0.76775 1.04607 1.03187 1.47717 1.08592 1.04670 1.71037 1.22188 0.99188 0.85279 0.96012 1.22240 0.84689 0.95324 0.93816 0.91115 1.86560 1.31908 1.60203 1.58208 1.21428 0.97591 0.95245 0.85852 1.42628 1.62530 1.31232 1.03760 1.19060 1.22926 1.01712 0.92834 0.92081 1.25450 1.01081 0.98912 0.99850 1.69863 1.45436 1.27869 1.20016 0.85407 0.77988 0.79127 0.79179 1.20063 1.22158 1.18945 1.18250 0.86571 0.84053 0.76200 1.90731 1.15001 1.87648 1.51066 1.19732 1.03131 0.96079 0.99629 1.22960 0.88745 0.93909 0.95963 1.67778 1.27386 1.02884 1.22567 1.22700 0.91094 0.98077 0.85659 1.20383 1.02041 0.92843 0.99532 1.70498 1.13304 1.30402 1.08232 1.26604 0.94921 0.80672 0.98584 1.45465 1.30082 1.19138 1.22307 1.22644 0.91702 0.90137 1.04098 1.18881 0.94600 0.97318 0.91884 0.91146 0.91225 0.87997 0.89455 0.85922 0.76278 0.95284 0.93464 0.80090 0.93250 0.80505 0.79092 0.71664 0.89701 0.85487 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 8.86 127.77 1.13 2.07 16 2 N -0.59 -11.24 2.84 -850.53 -2.41 -13.65 16 3 C 0.10 1.90 5.07 86.38 0.44 2.34 16 4 C 0.10 2.80 3.30 30.59 0.10 2.90 16 5 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 6 O -0.56 -14.63 12.64 -148.98 -1.88 -16.51 16 7 C 0.13 4.49 5.92 86.38 0.51 5.00 16 8 N -0.76 -35.91 5.30 -343.46 -1.82 -37.73 16 9 C -0.23 -13.53 10.47 84.03 0.88 -12.65 16 10 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 11 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 12 N -0.98 -63.52 13.97 21.65 0.30 -63.22 16 13 Si 0.96 47.43 27.74 68.60 1.90 49.33 16 14 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 15 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 16 H -0.26 -12.42 6.52 99.48 0.65 -11.77 16 17 C 0.56 13.60 6.49 86.70 0.56 14.16 16 18 O -0.56 -17.42 13.91 -4.00 -0.06 -17.47 16 19 C -0.18 -3.95 4.64 -20.02 -0.09 -4.04 16 20 C 0.14 2.77 9.21 84.96 0.78 3.56 16 21 N -0.50 -10.26 10.30 -193.92 -2.00 -12.26 16 22 C 0.19 3.59 11.25 84.99 0.96 4.55 16 23 C -0.03 -0.58 7.27 39.46 0.29 -0.29 16 24 N -0.51 -9.61 11.28 -191.89 -2.16 -11.77 16 25 C 0.28 3.51 12.50 179.97 2.25 5.76 16 26 N -0.48 -7.94 3.18 -542.67 -1.73 -9.66 16 27 C 0.05 0.68 10.59 127.77 1.35 2.04 16 28 C 0.09 2.03 6.83 39.50 0.27 2.30 16 29 H 0.07 0.91 7.43 -2.39 -0.02 0.89 16 30 H 0.07 0.86 6.52 -2.39 -0.02 0.85 16 31 H 0.10 0.79 7.84 -2.39 -0.02 0.77 16 32 H 0.09 1.91 7.49 -2.39 -0.02 1.89 16 33 H 0.12 1.55 7.86 -2.39 -0.02 1.53 16 34 H 0.39 7.05 9.05 -74.05 -0.67 6.38 16 35 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.37 17.39 5.41 -92.71 -0.50 16.89 16 38 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 39 H 0.18 3.12 7.04 -2.91 -0.02 3.10 16 40 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.27 0.32 8.06 -2.91 -0.02 0.30 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.13 0.66 8.13 -2.39 -0.02 0.64 16 44 H 0.08 1.71 4.91 -2.38 -0.01 1.70 16 Total: -1.00 -84.34 366.51 -0.13 -84.47 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.17 Total: 23.98 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 9.90 Total: 24.48 kcal Atomic # 7 Polarization: -138.47 SS G_CDS: -9.82 Total: -148.29 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.94 Total: -33.98 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.90 Total: 49.33 kcal Total: -84.34 -0.13 -84.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507486375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.523 kcal (2) G-P(sol) polarization free energy of solvation -84.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds