Wall clock time and date at job start Tue Mar 31 2020 17:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36945 * 119.99722 * 2 1 4 4 H 1.07996 * 119.99229 * 209.65727 * 3 2 1 5 5 C 1.38809 * 119.99897 * 29.65875 * 3 2 1 6 6 N 1.31617 * 120.00307 * 7.65913 * 5 3 2 7 7 Si 1.86806 * 119.99654 * 187.66112 * 5 3 2 8 8 H 1.48499 * 109.47314 * 89.99939 * 7 5 3 9 9 H 1.48496 * 109.47140 * 210.00024 * 7 5 3 10 10 H 1.48504 * 109.46971 * 330.00072 * 7 5 3 11 11 C 1.46492 * 120.00079 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47249 * 90.00254 * 11 2 1 13 13 H 1.08996 * 109.47569 * 60.00046 * 12 11 2 14 14 O 1.42902 * 109.46823 * 300.00115 * 12 11 2 15 15 C 1.53000 * 109.47472 * 180.02562 * 12 11 2 16 16 N 1.46495 * 109.47349 * 184.99661 * 15 12 11 17 17 C 1.46501 * 120.00487 * 269.99943 * 16 15 12 18 18 C 1.34782 * 119.99584 * 89.99968 * 16 15 12 19 19 O 1.21582 * 120.00211 * 2.68117 * 18 16 15 20 20 C 1.47498 * 119.99755 * 182.68216 * 18 16 15 21 21 C 1.36889 * 120.61000 * 333.29788 * 20 18 16 22 22 C 1.40139 * 119.25994 * 179.97438 * 21 20 18 23 23 N 1.31146 * 120.45903 * 0.02562 * 22 21 20 24 24 C 1.33699 * 121.18746 * 359.97438 * 23 22 21 25 25 C 1.39069 * 132.55645 * 180.02562 * 24 23 22 26 26 C 1.38496 * 107.66785 * 179.97438 * 25 24 23 27 27 N 1.31535 * 109.03771 * 359.97438 * 26 25 24 28 28 N 1.37291 * 120.63590 * 0.02562 * 24 23 22 29 29 H 1.08998 * 109.46964 * 265.56524 * 1 2 3 30 30 H 1.08999 * 109.47033 * 25.55972 * 1 2 3 31 31 H 1.08997 * 109.46898 * 145.55934 * 1 2 3 32 32 H 0.97002 * 119.99722 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.47312 * 330.00167 * 11 2 1 34 34 H 1.09002 * 109.47381 * 210.00051 * 11 2 1 35 35 H 0.96700 * 113.99748 * 299.99263 * 14 12 11 36 36 H 1.09008 * 109.47046 * 64.99715 * 15 12 11 37 37 H 1.09000 * 109.47153 * 305.00099 * 15 12 11 38 38 H 1.08999 * 109.46937 * 269.50290 * 17 16 15 39 39 H 1.08996 * 109.46469 * 29.50401 * 17 16 15 40 40 H 1.09000 * 109.47093 * 149.50378 * 17 16 15 41 41 H 1.08000 * 120.37618 * 0.02562 * 21 20 18 42 42 H 1.07993 * 119.77217 * 180.02562 * 22 21 20 43 43 H 1.07998 * 126.16897 * 359.96881 * 25 24 23 44 44 H 1.08003 * 125.48164 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1236 1.2472 -0.4628 5 6 1.5920 2.3093 0.5949 6 7 0.4785 2.2025 1.2884 7 14 2.4219 3.9728 0.4110 8 1 1.8962 4.6574 -0.7974 9 1 2.1412 4.8014 1.6109 10 1 3.8882 3.7819 0.2732 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7109 -1.4417 13 1 3.0417 -0.9516 -1.9559 14 8 1.2040 -1.8821 -2.1153 15 6 3.2171 -3.0363 -1.4412 16 7 3.5655 -3.3997 -2.8169 17 6 2.6450 -4.2129 -3.6153 18 6 4.7330 -2.9857 -3.3481 19 8 5.5187 -2.3523 -2.6701 20 6 5.0575 -3.3012 -4.7519 21 6 4.5220 -4.4045 -5.3601 22 6 4.8491 -4.6772 -6.6952 23 7 5.6595 -3.8856 -7.3561 24 6 6.1927 -2.8034 -6.7800 25 6 7.0601 -1.8210 -7.2455 26 6 7.2807 -0.9295 -6.2088 27 7 6.5978 -1.3199 -5.1546 28 7 5.9042 -2.4920 -5.4744 29 1 -0.3633 -0.0795 1.0246 30 1 -0.3633 0.9271 -0.4434 31 1 -0.3633 -0.8475 -0.5812 32 1 0.0890 2.9875 1.7044 33 1 1.6085 -2.0281 0.5147 34 1 3.1500 -1.1381 0.5143 35 1 0.6269 -2.5447 -1.7115 36 1 2.5917 -3.8163 -1.0066 37 1 4.1277 -2.9302 -0.8516 38 1 2.8806 -5.2683 -3.4786 39 1 1.6209 -4.0244 -3.2931 40 1 2.7486 -3.9509 -4.6683 41 1 3.8542 -5.0571 -4.8174 42 1 4.4310 -5.5451 -7.1832 43 1 7.4851 -1.7637 -8.2366 44 1 7.9119 -0.0545 -6.2581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507640912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:10 Heat of formation + Delta-G solvation = 99.931983 kcal Electronic energy + Delta-G solvation = -28928.635392 eV Core-core repulsion = 24886.119263 eV Total energy + Delta-G solvation = -4042.516128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.62406 -40.26488 -38.27913 -37.56709 -35.71481 -34.67748 -34.20176 -31.72088 -31.27968 -30.05089 -29.13441 -27.52584 -26.61193 -25.70386 -24.76476 -23.67000 -22.67323 -21.71698 -20.64480 -19.84615 -18.47816 -18.21530 -17.03930 -16.84129 -16.58399 -16.29249 -16.04166 -15.63975 -15.03696 -14.95600 -14.74683 -14.40990 -14.24693 -13.76418 -13.66629 -13.41092 -13.27881 -13.14491 -12.92545 -12.89772 -12.29453 -11.86666 -11.64725 -11.43754 -11.23640 -11.14847 -10.88963 -10.71931 -10.67160 -10.55227 -10.38926 -10.11529 -9.91602 -9.90279 -9.82018 -9.68624 -8.78869 -8.43016 -8.20617 -6.57745 -5.71584 -3.22104 -0.16266 0.52640 1.57467 2.24468 2.53363 2.68623 3.13305 3.41859 3.47522 3.49915 3.50776 3.69447 3.90237 4.34684 4.51450 4.65403 4.71982 4.73613 4.83989 4.90053 5.01540 5.09840 5.19152 5.19730 5.42292 5.45343 5.47347 5.65521 5.71969 5.81923 5.84749 5.98434 6.03670 6.23380 6.28528 6.60973 6.69542 6.88718 6.96582 7.19735 7.24585 7.42387 7.71896 7.76462 7.85868 8.09336 8.48321 9.28376 9.88632 10.40297 11.34207 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.003201 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.494248 B = 8745.455686 C =10151.240706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.589 5.589 3 C -0.258 4.258 4 H 0.063 0.937 5 C 0.007 3.993 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.127 3.873 12 C 0.069 3.931 13 H 0.097 0.903 14 O -0.549 6.549 15 C 0.085 3.915 16 N -0.589 5.589 17 C 0.055 3.945 18 C 0.549 3.451 19 O -0.488 6.488 20 C 0.163 3.837 21 C -0.213 4.213 22 C 0.172 3.828 23 N -0.449 5.449 24 C 0.244 3.756 25 C -0.252 4.252 26 C 0.079 3.921 27 N -0.272 5.272 28 N -0.292 5.292 29 H 0.014 0.986 30 H 0.049 0.951 31 H -0.001 1.001 32 H 0.253 0.747 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.358 0.642 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.191 0.809 42 H 0.187 0.813 43 H 0.165 0.835 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 -19.617 -15.183 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.311 5.311 3 C -0.387 4.387 4 H 0.081 0.919 5 C -0.191 4.191 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.203 1.203 11 C -0.003 4.003 12 C 0.006 3.994 13 H 0.115 0.885 14 O -0.352 6.352 15 C -0.038 4.038 16 N -0.322 5.322 17 C -0.088 4.088 18 C 0.333 3.667 19 O -0.360 6.360 20 C 0.043 3.957 21 C -0.237 4.237 22 C -0.013 4.013 23 N -0.160 5.160 24 C 0.017 3.983 25 C -0.283 4.283 26 C -0.100 4.100 27 N -0.095 5.095 28 N -0.065 5.065 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.203 0.797 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.207 0.793 42 H 0.204 0.796 43 H 0.183 0.817 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.552 -18.245 -14.704 24.332 hybrid contribution 0.119 0.494 0.172 0.536 sum 6.671 -17.751 -14.532 23.892 Atomic orbital electron populations 1.20728 0.82615 0.97360 0.96993 1.43628 1.01741 1.00103 1.85608 1.19164 1.02260 0.87221 1.30091 0.91882 1.25150 0.97866 0.98952 0.97163 1.70033 1.20745 1.28499 1.35840 0.86265 0.79304 0.84003 0.77077 1.21417 1.21616 1.20293 1.21269 0.97173 0.89695 0.92115 1.23335 0.84122 0.94030 0.97941 0.88521 1.86661 1.29131 1.63335 1.56104 1.22518 1.01963 0.98730 0.80556 1.47545 1.17488 1.52097 1.15067 1.22594 0.95293 0.93936 0.96942 1.17533 0.82944 0.81301 0.84969 1.90944 1.47712 1.37016 1.60308 1.20376 0.90893 0.90713 0.93714 1.23050 1.04156 0.98469 0.98029 1.23404 0.90529 0.96796 0.90580 1.67922 1.09919 1.02433 1.35701 1.20775 0.99691 0.95487 0.82315 1.21051 1.07767 0.96945 1.02536 1.24052 0.96824 0.99294 0.89801 1.78402 1.13010 0.95963 1.22144 1.47156 1.30377 1.18783 1.10210 0.96745 0.93184 0.98289 0.93742 0.94309 0.92452 0.79669 0.89707 0.88570 0.91600 0.89336 0.89765 0.79267 0.79626 0.81732 0.78234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.16 8.77 59.85 0.53 4.69 16 2 N -0.59 -15.03 2.83 -181.12 -0.51 -15.54 16 3 C -0.26 -7.39 9.59 -15.06 -0.14 -7.53 16 4 H 0.06 1.83 7.84 -52.49 -0.41 1.41 16 5 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 6 N -0.91 -27.08 10.91 55.49 0.61 -26.47 16 7 Si 0.90 22.81 29.56 -169.99 -5.02 17.79 16 8 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 C 0.13 2.52 5.38 -4.05 -0.02 2.49 16 12 C 0.07 1.18 3.48 -26.73 -0.09 1.08 16 13 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 14 O -0.55 -8.89 10.82 -35.23 -0.38 -9.27 16 15 C 0.08 1.07 5.08 -4.04 -0.02 1.05 16 16 N -0.59 -6.91 2.84 -182.83 -0.52 -7.42 16 17 C 0.05 0.37 8.54 59.85 0.51 0.88 16 18 C 0.55 8.20 7.56 -12.48 -0.09 8.10 16 19 O -0.49 -9.45 15.99 5.29 0.08 -9.36 16 20 C 0.16 2.11 6.48 -81.99 -0.53 1.58 16 21 C -0.21 -1.65 7.58 -39.36 -0.30 -1.95 16 22 C 0.17 1.24 11.26 -17.13 -0.19 1.04 16 23 N -0.45 -4.94 10.44 -12.24 -0.13 -5.07 16 24 C 0.24 3.24 7.93 -155.57 -1.23 2.01 16 25 C -0.25 -2.96 10.91 -39.18 -0.43 -3.38 16 26 C 0.08 0.97 11.94 -17.58 -0.21 0.76 16 27 N -0.27 -4.51 11.97 30.46 0.36 -4.15 16 28 N -0.29 -4.42 3.93 -8.88 -0.03 -4.46 16 29 H 0.01 0.38 7.76 -51.93 -0.40 -0.03 16 30 H 0.05 1.38 7.02 -51.93 -0.36 1.01 16 31 H 0.00 -0.03 6.81 -51.93 -0.35 -0.38 16 32 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 34 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 35 H 0.36 4.31 8.80 45.56 0.40 4.71 16 36 H 0.08 0.78 8.07 -51.92 -0.42 0.36 16 37 H 0.10 1.35 7.38 -51.93 -0.38 0.96 16 38 H 0.07 0.23 7.19 -51.93 -0.37 -0.14 16 39 H 0.09 0.58 7.12 -51.93 -0.37 0.21 16 40 H 0.08 0.54 5.04 -51.93 -0.26 0.28 16 41 H 0.19 0.75 4.23 -52.49 -0.22 0.52 16 42 H 0.19 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.20 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -39.78 364.26 -7.20 -46.98 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.82 Total: 0.55 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -2.32 Total: 10.95 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.22 Total: -63.12 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.30 Total: -18.64 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.78 -7.20 -46.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507640912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.908 kcal (2) G-P(sol) polarization free energy of solvation -39.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds