Wall clock time and date at job start Tue Mar 31 2020 17:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36945 * 119.99722 * 2 1 4 4 H 1.07996 * 119.99229 * 209.65727 * 3 2 1 5 5 C 1.38809 * 119.99897 * 29.65875 * 3 2 1 6 6 N 1.31617 * 120.00307 * 7.65913 * 5 3 2 7 7 Si 1.86806 * 119.99654 * 187.66112 * 5 3 2 8 8 H 1.48499 * 109.47314 * 89.99939 * 7 5 3 9 9 H 1.48496 * 109.47140 * 210.00024 * 7 5 3 10 10 H 1.48504 * 109.46971 * 330.00072 * 7 5 3 11 11 C 1.46492 * 120.00079 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47249 * 90.00254 * 11 2 1 13 13 H 1.08996 * 109.47569 * 60.00046 * 12 11 2 14 14 O 1.42902 * 109.46823 * 300.00115 * 12 11 2 15 15 C 1.53000 * 109.47472 * 180.02562 * 12 11 2 16 16 N 1.46495 * 109.47349 * 184.99661 * 15 12 11 17 17 C 1.46501 * 120.00487 * 269.99943 * 16 15 12 18 18 C 1.34782 * 119.99584 * 89.99968 * 16 15 12 19 19 O 1.21582 * 120.00211 * 2.68117 * 18 16 15 20 20 C 1.47498 * 119.99755 * 182.68216 * 18 16 15 21 21 C 1.36889 * 120.61000 * 333.29788 * 20 18 16 22 22 C 1.40139 * 119.25994 * 179.97438 * 21 20 18 23 23 N 1.31146 * 120.45903 * 0.02562 * 22 21 20 24 24 C 1.33699 * 121.18746 * 359.97438 * 23 22 21 25 25 C 1.39069 * 132.55645 * 180.02562 * 24 23 22 26 26 C 1.38496 * 107.66785 * 179.97438 * 25 24 23 27 27 N 1.31535 * 109.03771 * 359.97438 * 26 25 24 28 28 N 1.37291 * 120.63590 * 0.02562 * 24 23 22 29 29 H 1.08998 * 109.46964 * 265.56524 * 1 2 3 30 30 H 1.08999 * 109.47033 * 25.55972 * 1 2 3 31 31 H 1.08997 * 109.46898 * 145.55934 * 1 2 3 32 32 H 0.97002 * 119.99722 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.47312 * 330.00167 * 11 2 1 34 34 H 1.09002 * 109.47381 * 210.00051 * 11 2 1 35 35 H 0.96700 * 113.99748 * 299.99263 * 14 12 11 36 36 H 1.09008 * 109.47046 * 64.99715 * 15 12 11 37 37 H 1.09000 * 109.47153 * 305.00099 * 15 12 11 38 38 H 1.08999 * 109.46937 * 269.50290 * 17 16 15 39 39 H 1.08996 * 109.46469 * 29.50401 * 17 16 15 40 40 H 1.09000 * 109.47093 * 149.50378 * 17 16 15 41 41 H 1.08000 * 120.37618 * 0.02562 * 21 20 18 42 42 H 1.07993 * 119.77217 * 180.02562 * 22 21 20 43 43 H 1.07998 * 126.16897 * 359.96881 * 25 24 23 44 44 H 1.08003 * 125.48164 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1236 1.2472 -0.4628 5 6 1.5920 2.3093 0.5949 6 7 0.4785 2.2025 1.2884 7 14 2.4219 3.9728 0.4110 8 1 1.8962 4.6574 -0.7974 9 1 2.1412 4.8014 1.6109 10 1 3.8882 3.7819 0.2732 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7109 -1.4417 13 1 3.0417 -0.9516 -1.9559 14 8 1.2040 -1.8821 -2.1153 15 6 3.2171 -3.0363 -1.4412 16 7 3.5655 -3.3997 -2.8169 17 6 2.6450 -4.2129 -3.6153 18 6 4.7330 -2.9857 -3.3481 19 8 5.5187 -2.3523 -2.6701 20 6 5.0575 -3.3012 -4.7519 21 6 4.5220 -4.4045 -5.3601 22 6 4.8491 -4.6772 -6.6952 23 7 5.6595 -3.8856 -7.3561 24 6 6.1927 -2.8034 -6.7800 25 6 7.0601 -1.8210 -7.2455 26 6 7.2807 -0.9295 -6.2088 27 7 6.5978 -1.3199 -5.1546 28 7 5.9042 -2.4920 -5.4744 29 1 -0.3633 -0.0795 1.0246 30 1 -0.3633 0.9271 -0.4434 31 1 -0.3633 -0.8475 -0.5812 32 1 0.0890 2.9875 1.7044 33 1 1.6085 -2.0281 0.5147 34 1 3.1500 -1.1381 0.5143 35 1 0.6269 -2.5447 -1.7115 36 1 2.5917 -3.8163 -1.0066 37 1 4.1277 -2.9302 -0.8516 38 1 2.8806 -5.2683 -3.4786 39 1 1.6209 -4.0244 -3.2931 40 1 2.7486 -3.9509 -4.6683 41 1 3.8542 -5.0571 -4.8174 42 1 4.4310 -5.5451 -7.1832 43 1 7.4851 -1.7637 -8.2366 44 1 7.9119 -0.0545 -6.2581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507640912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:09 Heat of formation + Delta-G solvation = 67.994230 kcal Electronic energy + Delta-G solvation = -28930.020317 eV Core-core repulsion = 24886.119263 eV Total energy + Delta-G solvation = -4043.901053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.47503 -41.28015 -39.17784 -38.91723 -37.01847 -36.25614 -35.09633 -33.37730 -32.49224 -31.28755 -30.15458 -28.32416 -28.01892 -27.68500 -25.82391 -24.50934 -23.99176 -22.89648 -22.34083 -20.81526 -19.34652 -19.08765 -18.79970 -17.86340 -17.73015 -17.29154 -17.09134 -16.82568 -16.63134 -16.27622 -16.05335 -15.49967 -15.24119 -15.14333 -14.89845 -14.74960 -14.50553 -14.13130 -14.00012 -13.80160 -13.65817 -13.08886 -13.02103 -12.88252 -12.70933 -12.55359 -12.32717 -12.27213 -12.14415 -12.08258 -12.02676 -11.86709 -11.69058 -11.34029 -10.81068 -10.68099 -10.57073 -9.79072 -9.09595 -8.62960 -7.90555 -5.43273 -0.96245 -0.22630 0.73621 1.31933 1.37797 1.38553 1.48333 1.59468 1.76062 2.34269 2.43515 2.75762 2.92599 3.17755 3.22661 3.49567 3.67456 3.76174 3.89103 3.97355 4.09487 4.13267 4.15372 4.34146 4.38104 4.45227 4.46875 4.60857 4.73673 4.76964 4.91426 4.93554 4.95275 4.99653 5.16086 5.29783 5.34015 5.37744 5.41584 5.55617 5.68000 6.04342 6.31264 6.31923 6.47545 6.77236 7.00982 7.12537 7.84234 8.26723 9.11561 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.003201 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.494248 B = 8745.455686 C =10151.240706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.610 5.610 3 C -0.269 4.269 4 H 0.047 0.953 5 C -0.042 4.042 6 N -0.931 5.931 7 Si 0.961 3.039 8 H -0.286 1.286 9 H -0.283 1.283 10 H -0.277 1.277 11 C 0.123 3.877 12 C 0.092 3.908 13 H 0.037 0.963 14 O -0.558 6.558 15 C 0.095 3.905 16 N -0.581 5.581 17 C 0.040 3.960 18 C 0.539 3.461 19 O -0.554 6.554 20 C 0.109 3.891 21 C -0.167 4.167 22 C 0.188 3.812 23 N -0.466 5.466 24 C 0.228 3.772 25 C -0.262 4.262 26 C 0.075 3.925 27 N -0.343 5.343 28 N -0.309 5.309 29 H -0.005 1.005 30 H 0.013 0.987 31 H 0.041 0.959 32 H 0.251 0.749 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.382 0.618 36 H 0.138 0.862 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.237 0.763 42 H 0.249 0.751 43 H 0.189 0.811 44 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 -23.553 -16.958 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.333 5.333 3 C -0.400 4.400 4 H 0.065 0.935 5 C -0.238 4.238 6 N -0.577 5.577 7 Si 0.789 3.211 8 H -0.212 1.212 9 H -0.209 1.209 10 H -0.202 1.202 11 C -0.004 4.004 12 C 0.029 3.971 13 H 0.056 0.944 14 O -0.365 6.365 15 C -0.028 4.028 16 N -0.312 5.312 17 C -0.100 4.100 18 C 0.325 3.675 19 O -0.431 6.431 20 C -0.009 4.009 21 C -0.191 4.191 22 C 0.004 3.996 23 N -0.177 5.177 24 C 0.002 3.998 25 C -0.292 4.292 26 C -0.102 4.102 27 N -0.168 5.168 28 N -0.083 5.083 29 H 0.014 0.986 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.231 0.769 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.252 0.748 42 H 0.264 0.736 43 H 0.207 0.793 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.024 -22.254 -16.499 28.155 hybrid contribution 0.455 1.496 0.632 1.686 sum 5.479 -20.758 -15.867 26.696 Atomic orbital electron populations 1.20494 0.82359 0.97148 0.96148 1.43847 1.02220 1.01078 1.86109 1.19304 1.01920 0.89186 1.29580 0.93528 1.25806 0.98675 1.01951 0.97389 1.70153 1.21729 1.29064 1.36715 0.85372 0.78339 0.80314 0.77065 1.21246 1.20900 1.20194 1.21490 0.96402 0.88333 0.94201 1.22670 0.84651 0.95083 0.94698 0.94438 1.86616 1.29094 1.64659 1.56159 1.22311 1.01238 0.97619 0.81602 1.47640 1.17113 1.51495 1.14969 1.23062 0.94724 0.95753 0.96486 1.18025 0.83225 0.80479 0.85731 1.90897 1.50077 1.40177 1.61993 1.20619 0.93637 0.93160 0.93436 1.23766 1.01360 0.95813 0.98160 1.24539 0.88091 0.96915 0.90095 1.68059 1.11237 1.02350 1.36070 1.21267 1.00100 0.96513 0.81967 1.21432 1.07834 0.96623 1.03326 1.24562 0.96339 1.00099 0.89203 1.78260 1.15554 0.98225 1.24764 1.47263 1.31134 1.18844 1.11074 0.98629 0.96845 0.94063 0.93981 0.90578 0.94118 0.76932 0.84435 0.90541 0.86529 0.88265 0.89220 0.74760 0.73558 0.79338 0.75573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 8.77 127.77 1.12 10.21 16 2 N -0.61 -31.61 2.83 -726.95 -2.05 -33.66 16 3 C -0.27 -16.01 9.59 84.03 0.81 -15.21 16 4 H 0.05 2.87 7.84 -2.91 -0.02 2.84 16 5 C -0.04 -2.51 5.13 84.86 0.44 -2.07 16 6 N -0.93 -56.86 10.91 21.65 0.24 -56.62 16 7 Si 0.96 48.30 29.56 68.60 2.03 50.33 16 8 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 9 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 10 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 11 C 0.12 4.86 5.38 86.38 0.46 5.32 16 12 C 0.09 3.13 3.48 30.59 0.11 3.23 16 13 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 14 O -0.56 -16.79 10.82 -148.98 -1.61 -18.41 16 15 C 0.10 2.25 5.08 86.38 0.44 2.69 16 16 N -0.58 -12.44 2.84 -850.60 -2.41 -14.86 16 17 C 0.04 0.33 8.54 127.77 1.09 1.42 16 18 C 0.54 16.42 7.56 86.68 0.66 17.07 16 19 O -0.55 -23.28 15.99 -3.97 -0.06 -23.34 16 20 C 0.11 2.76 6.48 40.36 0.26 3.03 16 21 C -0.17 -1.91 7.58 22.41 0.17 -1.74 16 22 C 0.19 1.79 11.26 85.26 0.96 2.75 16 23 N -0.47 -9.07 10.44 -192.62 -2.01 -11.08 16 24 C 0.23 6.02 7.93 133.23 1.06 7.08 16 25 C -0.26 -6.26 10.91 22.53 0.25 -6.01 16 26 C 0.07 1.99 11.94 84.80 1.01 3.00 16 27 N -0.34 -12.39 11.97 -57.54 -0.69 -13.08 16 28 N -0.31 -9.70 3.93 -181.99 -0.72 -10.42 16 29 H 0.00 -0.24 7.76 -2.39 -0.02 -0.26 16 30 H 0.01 0.72 7.02 -2.39 -0.02 0.70 16 31 H 0.04 1.66 6.81 -2.39 -0.02 1.64 16 32 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.08 2.44 8.07 -2.38 -0.02 2.42 16 34 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 35 H 0.38 7.43 8.80 -74.06 -0.65 6.78 16 36 H 0.14 1.83 8.07 -2.38 -0.02 1.81 16 37 H 0.08 2.17 7.38 -2.39 -0.02 2.15 16 38 H 0.12 -0.10 7.19 -2.39 -0.02 -0.11 16 39 H 0.10 0.73 7.12 -2.39 -0.02 0.71 16 40 H 0.09 0.68 5.04 -2.39 -0.01 0.67 16 41 H 0.24 0.26 4.23 -2.91 -0.01 0.25 16 42 H 0.25 -0.80 8.06 -2.91 -0.02 -0.83 16 43 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 44 H 0.23 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -98.46 364.26 1.93 -96.53 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 0.40 Total: 3.85 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: 8.83 Total: 30.76 kcal Atomic # 7 Polarization: -132.07 SS G_CDS: -7.65 Total: -139.72 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.68 Total: -41.75 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.33 kcal Total: -98.46 1.93 -96.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507640912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.526 kcal (2) G-P(sol) polarization free energy of solvation -98.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds