Wall clock time and date at job start Tue Mar 31 2020 17:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36941 * 120.00326 * 2 1 4 4 H 1.08000 * 119.99721 * 323.81486 * 3 2 1 5 5 C 1.38811 * 120.00561 * 143.81972 * 3 2 1 6 6 N 1.31615 * 120.00356 * 157.85533 * 5 3 2 7 7 Si 1.86806 * 119.99576 * 337.85380 * 5 3 2 8 8 H 1.48503 * 109.46743 * 95.34970 * 7 5 3 9 9 H 1.48499 * 109.47065 * 215.34695 * 7 5 3 10 10 H 1.48501 * 109.47049 * 335.35036 * 7 5 3 11 11 C 1.46504 * 120.00147 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46930 * 90.00217 * 11 2 1 13 13 C 1.53002 * 109.47379 * 180.02562 * 12 11 2 14 14 N 1.46500 * 109.47510 * 179.97438 * 13 12 11 15 15 C 1.46496 * 120.00113 * 269.99969 * 14 13 12 16 16 C 1.34780 * 119.99830 * 89.99785 * 14 13 12 17 17 O 1.21575 * 120.00055 * 4.72419 * 16 14 13 18 18 C 1.47675 * 119.99829 * 184.72326 * 16 14 13 19 19 C 1.39914 * 120.38515 * 140.32744 * 18 16 14 20 20 N 1.31450 * 121.13657 * 179.97438 * 19 18 16 21 21 C 1.32479 * 121.80668 * 0.02562 * 20 19 18 22 22 N 1.37877 * 133.44197 * 180.02562 * 21 20 19 23 23 H 0.96992 * 126.25424 * 359.97438 * 22 21 20 24 24 C 1.36518 * 107.49529 * 179.97438 * 22 21 20 25 25 O 1.35261 * 125.02541 * 180.02562 * 24 22 21 26 26 N 1.30726 * 109.95424 * 359.97438 * 24 22 21 27 27 C 1.35899 * 109.39844 * 0.02562 * 26 24 22 28 28 C 1.39409 * 133.63254 * 179.97438 * 27 26 24 29 29 H 1.08998 * 109.47798 * 265.12503 * 1 2 3 30 30 H 1.09003 * 109.47099 * 25.12667 * 1 2 3 31 31 H 1.09000 * 109.47115 * 145.11841 * 1 2 3 32 32 H 0.97001 * 120.00000 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.46846 * 330.00626 * 11 2 1 34 34 H 1.08996 * 109.47632 * 210.00163 * 11 2 1 35 35 H 1.08999 * 109.47508 * 60.00338 * 12 11 2 36 36 H 1.09002 * 109.47326 * 300.00416 * 12 11 2 37 37 H 1.08999 * 109.46847 * 59.99538 * 13 12 11 38 38 H 1.09002 * 109.46908 * 300.00276 * 13 12 11 39 39 H 1.08991 * 109.47246 * 266.84922 * 15 14 13 40 40 H 1.08998 * 109.46960 * 26.84677 * 15 14 13 41 41 H 1.09004 * 109.47215 * 146.84386 * 15 14 13 42 42 H 1.07994 * 119.43742 * 0.28209 * 19 18 16 43 43 H 0.96706 * 113.99900 * 89.99640 * 25 24 22 44 44 H 1.08000 * 120.96873 * 359.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7659 2.0310 -0.5522 5 6 3.3371 1.3019 0.7096 6 7 4.2078 2.2348 0.3876 7 14 3.6990 0.1337 2.1217 8 1 4.5255 -0.9974 1.6288 9 1 4.4371 0.8586 3.1870 10 1 2.4224 -0.3888 2.6716 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.2170 -3.0363 -1.4413 14 7 3.4607 -3.4601 -2.8223 15 6 2.4836 -4.3059 -3.5122 16 6 4.5838 -3.0718 -3.4581 17 8 5.4345 -2.4424 -2.8596 18 6 4.7811 -3.4108 -4.8818 19 6 5.3544 -2.4824 -5.7575 20 7 5.5373 -2.7687 -7.0274 21 6 5.1896 -3.9416 -7.5357 22 7 5.2680 -4.4881 -8.7991 23 1 5.6252 -4.0552 -9.5902 24 6 4.7512 -5.7500 -8.7333 25 8 4.6559 -6.6053 -9.7768 26 7 4.3628 -6.0099 -7.5124 27 6 4.6063 -4.9314 -6.7221 28 6 4.3968 -4.6625 -5.3703 29 1 -0.3634 -0.0873 1.0239 30 1 -0.3633 0.9304 -0.4364 31 1 -0.3633 -0.8430 -0.5877 32 1 5.0373 2.3161 0.8838 33 1 1.6083 -2.0281 0.5146 34 1 3.1499 -1.1383 0.5143 35 1 3.0416 -0.9516 -1.9559 36 1 1.5001 -1.8415 -1.9556 37 1 2.6275 -3.7955 -0.9272 38 1 4.1694 -2.9062 -0.9273 39 1 2.7572 -5.3535 -3.3870 40 1 1.4934 -4.1361 -3.0894 41 1 2.4729 -4.0574 -4.5735 42 1 5.6564 -1.5156 -5.3828 43 1 5.4304 -7.1728 -9.8922 44 1 3.9510 -5.4002 -4.7195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570201252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:43 Heat of formation + Delta-G solvation = 62.220379 kcal Electronic energy + Delta-G solvation = -28134.478627 eV Core-core repulsion = 24090.327200 eV Total energy + Delta-G solvation = -4044.151426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = -0.82 seconds Orbital eigenvalues (eV) -42.85450 -40.30216 -38.84430 -37.32534 -36.43299 -35.51476 -34.23659 -32.45726 -31.58796 -30.72854 -29.76821 -27.23720 -26.38887 -25.63113 -24.26626 -23.77845 -22.43270 -21.81137 -20.61790 -19.86083 -19.77208 -18.77680 -17.69484 -17.14005 -16.74906 -16.35650 -16.21492 -15.87383 -15.44579 -15.18920 -14.91778 -14.45279 -14.09611 -13.77517 -13.49882 -13.37829 -13.21220 -12.96658 -12.83084 -12.65692 -12.57102 -12.24503 -11.99589 -11.83571 -11.57319 -11.42667 -11.30700 -11.05925 -10.77494 -10.39295 -10.38168 -10.12076 -9.68877 -9.56276 -9.41782 -9.26928 -8.91434 -8.61072 -8.43124 -6.77467 -5.91306 -3.31699 0.23196 0.52683 1.59273 2.07036 2.66014 2.88280 3.08143 3.38411 3.47149 3.52269 3.57258 3.79179 4.17547 4.31119 4.46374 4.55128 4.59876 4.84849 4.97105 5.05249 5.20248 5.27469 5.39486 5.45258 5.48521 5.55691 5.62727 5.79557 5.92579 5.95441 6.02867 6.10211 6.14915 6.30463 6.38182 6.53375 6.68960 6.73307 6.83834 6.89403 7.04845 7.10100 7.32172 7.44057 8.11843 8.16044 8.43725 9.05250 9.78983 10.18475 11.24532 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.021879 B = 0.002504 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.481859 B =11180.856595 C =11578.174693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.613 5.613 3 C -0.271 4.271 4 H 0.078 0.922 5 C 0.035 3.965 6 N -0.899 5.899 7 Si 0.879 3.121 8 H -0.283 1.283 9 H -0.302 1.302 10 H -0.272 1.272 11 C 0.141 3.859 12 C -0.147 4.147 13 C 0.113 3.887 14 N -0.606 5.606 15 C 0.070 3.930 16 C 0.563 3.437 17 O -0.515 6.515 18 C -0.180 4.180 19 C 0.199 3.801 20 N -0.481 5.481 21 C 0.267 3.733 22 N -0.588 5.588 23 H 0.430 0.570 24 C 0.465 3.535 25 O -0.437 6.437 26 N -0.469 5.469 27 C 0.003 3.997 28 C 0.011 3.989 29 H 0.005 0.995 30 H 0.044 0.956 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.183 0.817 43 H 0.414 0.586 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.548 -20.471 -18.748 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.337 5.337 3 C -0.400 4.400 4 H 0.095 0.905 5 C -0.165 4.165 6 N -0.540 5.540 7 Si 0.710 3.290 8 H -0.211 1.211 9 H -0.231 1.231 10 H -0.197 1.197 11 C 0.015 3.985 12 C -0.188 4.188 13 C -0.009 4.009 14 N -0.339 5.339 15 C -0.073 4.073 16 C 0.350 3.650 17 O -0.390 6.390 18 C -0.188 4.188 19 C 0.031 3.969 20 N -0.194 5.194 21 C 0.030 3.970 22 N -0.215 5.215 23 H 0.270 0.730 24 C 0.159 3.841 25 O -0.238 6.238 26 N -0.201 5.201 27 C -0.116 4.116 28 C -0.017 4.017 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.200 0.800 43 H 0.273 0.727 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.546 -20.083 -18.833 27.537 hybrid contribution 0.839 -0.610 0.324 1.087 sum 1.385 -20.693 -18.509 27.798 Atomic orbital electron populations 1.21045 0.84614 0.98964 0.97257 1.44035 1.00751 1.02039 1.86835 1.18774 1.04924 0.90340 1.25922 0.90468 1.25424 0.96783 0.96503 0.97823 1.69862 1.08336 1.35644 1.40166 0.86895 0.77838 0.80454 0.83814 1.21054 1.23058 1.19651 1.21065 0.96323 0.87734 0.93387 1.22491 0.99451 0.95653 1.01212 1.21685 1.01885 0.96988 0.80312 1.47799 1.20185 1.50910 1.15015 1.22129 0.93236 0.93852 0.98057 1.17862 0.82089 0.79764 0.85322 1.90889 1.42256 1.39205 1.66640 1.20774 1.05927 0.96114 0.96023 1.22829 0.89908 0.98997 0.85121 1.66526 1.20611 1.17169 1.15051 1.18781 1.00026 0.92578 0.85593 1.43017 1.53773 1.14824 1.09895 0.72989 1.20153 0.95233 0.81461 0.87227 1.84862 1.45266 1.49924 1.43787 1.70730 1.24314 1.26215 0.98840 1.19288 1.05461 0.91828 0.95045 1.21216 0.92952 0.95792 0.91722 0.97648 0.93716 0.95639 0.92705 0.94402 0.92834 0.90693 0.92809 0.90715 0.89564 0.92246 0.90353 0.90923 0.80028 0.72674 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.56 10.70 59.84 0.64 3.20 16 2 N -0.61 -14.94 2.51 -181.13 -0.45 -15.40 16 3 C -0.27 -7.80 9.91 -15.06 -0.15 -7.95 16 4 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 5 C 0.04 1.05 5.32 -17.43 -0.09 0.96 16 6 N -0.90 -28.28 13.97 55.49 0.78 -27.50 16 7 Si 0.88 22.89 24.96 -169.99 -4.24 18.65 16 8 H -0.28 -7.14 6.67 56.52 0.38 -6.76 16 9 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.14 3.05 4.53 -4.04 -0.02 3.04 16 12 C -0.15 -2.76 5.86 -26.73 -0.16 -2.91 16 13 C 0.11 1.75 5.43 -4.04 -0.02 1.73 16 14 N -0.61 -8.19 2.87 -182.76 -0.53 -8.71 16 15 C 0.07 0.65 8.89 59.84 0.53 1.18 16 16 C 0.56 8.61 7.35 -12.40 -0.09 8.52 16 17 O -0.51 -10.12 16.48 5.30 0.09 -10.04 16 18 C -0.18 -2.25 5.23 -104.85 -0.55 -2.80 16 19 C 0.20 2.49 10.78 -17.09 -0.18 2.31 16 20 N -0.48 -5.86 10.36 -11.91 -0.12 -5.99 16 21 C 0.27 2.94 8.45 -155.41 -1.31 1.63 16 22 N -0.59 -4.51 6.23 -13.35 -0.08 -4.59 16 23 H 0.43 1.99 8.96 -40.82 -0.37 1.63 16 24 C 0.46 3.70 9.39 -88.82 -0.83 2.86 16 25 O -0.44 -2.05 13.63 -17.48 -0.24 -2.29 16 26 N -0.47 -5.01 11.32 -12.21 -0.14 -5.15 16 27 C 0.00 0.04 7.22 -84.67 -0.61 -0.57 16 28 C 0.01 0.11 7.70 -38.58 -0.30 -0.18 16 29 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.04 0.89 8.00 -51.93 -0.42 0.48 16 31 H 0.02 0.44 8.11 -51.93 -0.42 0.01 16 32 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 33 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.05 1.30 3.06 -51.93 -0.16 1.14 16 35 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.09 1.53 7.36 -51.93 -0.38 1.15 16 39 H 0.06 0.42 7.00 -51.93 -0.36 0.06 16 40 H 0.08 0.65 8.05 -51.93 -0.42 0.24 16 41 H 0.07 0.65 5.74 -51.93 -0.30 0.35 16 42 H 0.18 2.19 8.05 -52.49 -0.42 1.77 16 43 H 0.41 -0.37 9.06 45.56 0.41 0.05 16 44 H 0.16 1.35 5.48 -52.49 -0.29 1.06 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -38.28 365.78 -7.39 -45.66 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.81 Total: -1.15 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -3.14 Total: 10.99 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -0.55 Total: -67.34 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.15 Total: -12.33 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.24 Total: 18.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.28 -7.39 -45.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570201252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.883 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.82 seconds