Wall clock time and date at job start Tue Mar 31 2020 17:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36941 * 120.00326 * 2 1 4 4 H 1.08000 * 119.99721 * 323.81486 * 3 2 1 5 5 C 1.38811 * 120.00561 * 143.81972 * 3 2 1 6 6 N 1.31615 * 120.00356 * 157.85533 * 5 3 2 7 7 Si 1.86806 * 119.99576 * 337.85380 * 5 3 2 8 8 H 1.48503 * 109.46743 * 95.34970 * 7 5 3 9 9 H 1.48499 * 109.47065 * 215.34695 * 7 5 3 10 10 H 1.48501 * 109.47049 * 335.35036 * 7 5 3 11 11 C 1.46504 * 120.00147 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46930 * 90.00217 * 11 2 1 13 13 C 1.53002 * 109.47379 * 180.02562 * 12 11 2 14 14 N 1.46500 * 109.47510 * 179.97438 * 13 12 11 15 15 C 1.46496 * 120.00113 * 269.99969 * 14 13 12 16 16 C 1.34780 * 119.99830 * 89.99785 * 14 13 12 17 17 O 1.21575 * 120.00055 * 4.72419 * 16 14 13 18 18 C 1.47675 * 119.99829 * 184.72326 * 16 14 13 19 19 C 1.39914 * 120.38515 * 140.32744 * 18 16 14 20 20 N 1.31450 * 121.13657 * 179.97438 * 19 18 16 21 21 C 1.32479 * 121.80668 * 0.02562 * 20 19 18 22 22 N 1.37877 * 133.44197 * 180.02562 * 21 20 19 23 23 H 0.96992 * 126.25424 * 359.97438 * 22 21 20 24 24 C 1.36518 * 107.49529 * 179.97438 * 22 21 20 25 25 O 1.35261 * 125.02541 * 180.02562 * 24 22 21 26 26 N 1.30726 * 109.95424 * 359.97438 * 24 22 21 27 27 C 1.35899 * 109.39844 * 0.02562 * 26 24 22 28 28 C 1.39409 * 133.63254 * 179.97438 * 27 26 24 29 29 H 1.08998 * 109.47798 * 265.12503 * 1 2 3 30 30 H 1.09003 * 109.47099 * 25.12667 * 1 2 3 31 31 H 1.09000 * 109.47115 * 145.11841 * 1 2 3 32 32 H 0.97001 * 120.00000 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.46846 * 330.00626 * 11 2 1 34 34 H 1.08996 * 109.47632 * 210.00163 * 11 2 1 35 35 H 1.08999 * 109.47508 * 60.00338 * 12 11 2 36 36 H 1.09002 * 109.47326 * 300.00416 * 12 11 2 37 37 H 1.08999 * 109.46847 * 59.99538 * 13 12 11 38 38 H 1.09002 * 109.46908 * 300.00276 * 13 12 11 39 39 H 1.08991 * 109.47246 * 266.84922 * 15 14 13 40 40 H 1.08998 * 109.46960 * 26.84677 * 15 14 13 41 41 H 1.09004 * 109.47215 * 146.84386 * 15 14 13 42 42 H 1.07994 * 119.43742 * 0.28209 * 19 18 16 43 43 H 0.96706 * 113.99900 * 89.99640 * 25 24 22 44 44 H 1.08000 * 120.96873 * 359.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7659 2.0310 -0.5522 5 6 3.3371 1.3019 0.7096 6 7 4.2078 2.2348 0.3876 7 14 3.6990 0.1337 2.1217 8 1 4.5255 -0.9974 1.6288 9 1 4.4371 0.8586 3.1870 10 1 2.4224 -0.3888 2.6716 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.2170 -3.0363 -1.4413 14 7 3.4607 -3.4601 -2.8223 15 6 2.4836 -4.3059 -3.5122 16 6 4.5838 -3.0718 -3.4581 17 8 5.4345 -2.4424 -2.8596 18 6 4.7811 -3.4108 -4.8818 19 6 5.3544 -2.4824 -5.7575 20 7 5.5373 -2.7687 -7.0274 21 6 5.1896 -3.9416 -7.5357 22 7 5.2680 -4.4881 -8.7991 23 1 5.6252 -4.0552 -9.5902 24 6 4.7512 -5.7500 -8.7333 25 8 4.6559 -6.6053 -9.7768 26 7 4.3628 -6.0099 -7.5124 27 6 4.6063 -4.9314 -6.7221 28 6 4.3968 -4.6625 -5.3703 29 1 -0.3634 -0.0873 1.0239 30 1 -0.3633 0.9304 -0.4364 31 1 -0.3633 -0.8430 -0.5877 32 1 5.0373 2.3161 0.8838 33 1 1.6083 -2.0281 0.5146 34 1 3.1499 -1.1383 0.5143 35 1 3.0416 -0.9516 -1.9559 36 1 1.5001 -1.8415 -1.9556 37 1 2.6275 -3.7955 -0.9272 38 1 4.1694 -2.9062 -0.9273 39 1 2.7572 -5.3535 -3.3870 40 1 1.4934 -4.1361 -3.0894 41 1 2.4729 -4.0574 -4.5735 42 1 5.6564 -1.5156 -5.3828 43 1 5.4304 -7.1728 -9.8922 44 1 3.9510 -5.4002 -4.7195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570201252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:37 Heat of formation + Delta-G solvation = 29.491432 kcal Electronic energy + Delta-G solvation = -28135.897860 eV Core-core repulsion = 24090.327200 eV Total energy + Delta-G solvation = -4045.570660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.60476 -41.34253 -39.64522 -38.19721 -37.86526 -36.84406 -35.09948 -33.98571 -33.23270 -32.01566 -30.61270 -28.35842 -27.95381 -27.16702 -25.11405 -24.84723 -23.54109 -22.92208 -22.41639 -20.83081 -20.46322 -19.53453 -18.76999 -18.52404 -17.97903 -17.42615 -17.27980 -17.10886 -16.86150 -16.29446 -15.95510 -15.56948 -15.29972 -15.25968 -14.93366 -14.74545 -14.49708 -14.19711 -13.96062 -13.86369 -13.47478 -13.40493 -13.35568 -13.07450 -12.95331 -12.71087 -12.45378 -12.32708 -12.25150 -12.17416 -12.14670 -11.70619 -11.29253 -11.27667 -10.61383 -10.48083 -10.13387 -9.78954 -9.65022 -8.76553 -8.19563 -5.56112 -0.54359 -0.36856 0.94459 1.31509 1.35804 1.39618 1.51937 1.55215 1.89369 2.35597 2.43142 2.57041 3.04243 3.07304 3.33721 3.46206 3.50747 3.62114 3.79683 4.01057 4.08721 4.22633 4.30775 4.45040 4.49400 4.55927 4.63373 4.69459 4.73092 4.76680 4.77272 4.82970 4.91292 5.05249 5.14340 5.16239 5.25896 5.40397 5.56506 5.65500 5.94375 6.14890 6.25865 6.33144 6.43222 6.63369 6.99761 7.03154 7.65669 8.04883 9.00520 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.021879 B = 0.002504 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.481859 B =11180.856595 C =11578.174693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.629 5.629 3 C -0.260 4.260 4 H 0.037 0.963 5 C -0.028 4.028 6 N -0.952 5.952 7 Si 0.949 3.051 8 H -0.275 1.275 9 H -0.310 1.310 10 H -0.252 1.252 11 C 0.134 3.866 12 C -0.132 4.132 13 C 0.120 3.880 14 N -0.602 5.602 15 C 0.062 3.938 16 C 0.560 3.440 17 O -0.574 6.574 18 C -0.187 4.187 19 C 0.184 3.816 20 N -0.491 5.491 21 C 0.254 3.746 22 N -0.575 5.575 23 H 0.444 0.556 24 C 0.489 3.511 25 O -0.432 6.432 26 N -0.496 5.496 27 C -0.002 4.002 28 C 0.025 3.975 29 H 0.018 0.982 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.261 0.739 33 H 0.081 0.919 34 H 0.026 0.974 35 H 0.020 0.980 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.172 0.828 43 H 0.441 0.559 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -24.826 -19.689 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.354 5.354 3 C -0.390 4.390 4 H 0.055 0.945 5 C -0.224 4.224 6 N -0.596 5.596 7 Si 0.778 3.222 8 H -0.202 1.202 9 H -0.239 1.239 10 H -0.175 1.175 11 C 0.008 3.992 12 C -0.172 4.172 13 C -0.003 4.003 14 N -0.333 5.333 15 C -0.079 4.079 16 C 0.348 3.652 17 O -0.453 6.453 18 C -0.196 4.196 19 C 0.017 3.983 20 N -0.204 5.204 21 C 0.017 3.983 22 N -0.204 5.204 23 H 0.287 0.713 24 C 0.183 3.817 25 O -0.238 6.238 26 N -0.229 5.229 27 C -0.122 4.122 28 C -0.002 4.002 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.189 0.811 43 H 0.306 0.694 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.455 -24.517 -19.831 31.567 hybrid contribution 1.347 0.657 0.339 1.537 sum -0.108 -23.859 -19.492 30.809 Atomic orbital electron populations 1.21183 0.81918 1.00304 0.98602 1.44222 1.02554 1.01446 1.87130 1.18676 1.04828 0.91243 1.24266 0.94504 1.26123 0.96906 0.98862 1.00475 1.70008 1.09140 1.38698 1.41760 0.85771 0.78346 0.78319 0.79795 1.20225 1.23905 1.17533 1.21216 0.95449 0.87446 0.95061 1.22250 1.00016 0.95941 0.99038 1.21535 1.00602 0.96539 0.81662 1.47862 1.20335 1.50623 1.14505 1.22464 0.92895 0.94595 0.97912 1.18289 0.81923 0.78796 0.86184 1.90854 1.44447 1.41991 1.68050 1.20437 1.07570 0.97208 0.94339 1.22708 0.90846 0.99114 0.85665 1.66493 1.21068 1.18043 1.14775 1.18983 1.00117 0.92295 0.86942 1.43012 1.53249 1.14708 1.09419 0.71299 1.20245 0.92732 0.81546 0.87153 1.84850 1.47030 1.49714 1.42192 1.70749 1.26166 1.26142 0.99824 1.19447 1.05298 0.92109 0.95335 1.21321 0.91887 0.95044 0.91952 0.96388 0.94549 0.91772 0.92998 0.90077 0.95637 0.96093 0.90537 0.86075 0.92538 0.89145 0.88564 0.90633 0.81065 0.69435 0.80246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.70 10.70 127.77 1.37 6.06 16 2 N -0.63 -30.06 2.51 -726.96 -1.82 -31.88 16 3 C -0.26 -15.43 9.91 84.03 0.83 -14.60 16 4 H 0.04 2.43 8.06 -2.91 -0.02 2.40 16 5 C -0.03 -1.70 5.32 84.86 0.45 -1.25 16 6 N -0.95 -62.94 13.97 21.65 0.30 -62.64 16 7 Si 0.95 48.38 24.96 68.60 1.71 50.09 16 8 H -0.27 -13.53 6.67 99.48 0.66 -12.87 16 9 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 10 H -0.25 -11.86 7.11 99.48 0.71 -11.15 16 11 C 0.13 5.50 4.53 86.38 0.39 5.89 16 12 C -0.13 -4.80 5.86 30.59 0.18 -4.62 16 13 C 0.12 3.47 5.43 86.38 0.47 3.94 16 14 N -0.60 -15.37 2.87 -850.40 -2.44 -17.81 16 15 C 0.06 0.92 8.89 127.77 1.14 2.06 16 16 C 0.56 17.52 7.35 86.74 0.64 18.16 16 17 O -0.57 -24.10 16.48 -3.95 -0.07 -24.16 16 18 C -0.19 -4.72 5.23 -20.01 -0.10 -4.83 16 19 C 0.18 4.87 10.78 85.16 0.92 5.79 16 20 N -0.49 -12.10 10.36 -191.61 -1.99 -14.09 16 21 C 0.25 5.32 8.45 133.83 1.13 6.45 16 22 N -0.58 -7.56 6.23 -306.99 -1.91 -9.48 16 23 H 0.44 3.11 8.96 -92.71 -0.83 2.28 16 24 C 0.49 6.35 9.39 179.72 1.69 8.04 16 25 O -0.43 -2.48 13.63 -85.45 -1.16 -3.64 16 26 N -0.50 -9.29 11.32 -306.40 -3.47 -12.76 16 27 C 0.00 -0.05 7.22 39.42 0.28 0.24 16 28 C 0.03 0.49 7.70 22.92 0.18 0.67 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 1.41 8.00 -2.39 -0.02 1.39 16 31 H 0.06 1.93 8.11 -2.39 -0.02 1.91 16 32 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 33 H 0.08 2.66 8.07 -2.39 -0.02 2.64 16 34 H 0.03 1.21 3.06 -2.39 -0.01 1.20 16 35 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.12 2.42 8.07 -2.39 -0.02 2.40 16 38 H 0.06 2.01 7.36 -2.39 -0.02 1.99 16 39 H 0.09 0.84 7.00 -2.39 -0.02 0.82 16 40 H 0.10 1.13 8.05 -2.39 -0.02 1.11 16 41 H 0.08 1.12 5.74 -2.39 -0.01 1.10 16 42 H 0.17 4.68 8.05 -2.91 -0.02 4.65 16 43 H 0.44 -2.56 9.06 -74.05 -0.67 -3.23 16 44 H 0.18 2.54 5.48 -2.91 -0.02 2.52 16 Total: -1.00 -89.11 365.78 -1.76 -90.87 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -0.47 Total: 3.51 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 9.56 Total: 32.00 kcal Atomic # 7 Polarization: -137.33 SS G_CDS: -11.33 Total: -148.67 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.23 Total: -27.80 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.71 Total: 50.09 kcal Total: -89.11 -1.76 -90.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570201252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.360 kcal (2) G-P(sol) polarization free energy of solvation -89.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds