Wall clock time and date at job start Tue Mar 31 2020 17:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99500 * 2 1 4 4 H 1.08009 * 119.99616 * 206.79930 * 3 2 1 5 5 C 1.38810 * 120.00464 * 26.80702 * 3 2 1 6 6 N 1.31622 * 119.99967 * 9.49149 * 5 3 2 7 7 Si 1.86798 * 120.00281 * 189.49345 * 5 3 2 8 8 H 1.48505 * 109.46860 * 59.99405 * 7 5 3 9 9 H 1.48493 * 109.47176 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47210 * 299.99981 * 7 5 3 11 11 C 1.46494 * 119.99995 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47278 * 90.00263 * 11 2 1 13 13 H 1.09004 * 109.47273 * 59.99476 * 12 11 2 14 14 O 1.42901 * 109.47322 * 299.99924 * 12 11 2 15 15 C 1.53007 * 109.47451 * 179.97438 * 12 11 2 16 16 N 1.46496 * 109.47334 * 184.99625 * 15 12 11 17 17 C 1.46502 * 120.00433 * 270.00412 * 16 15 12 18 18 C 1.34778 * 119.99484 * 90.00308 * 16 15 12 19 19 O 1.21569 * 120.00164 * 355.35938 * 18 16 15 20 20 C 1.47686 * 119.99987 * 175.36286 * 18 16 15 21 21 C 1.40180 * 120.41140 * 221.72213 * 20 18 16 22 22 N 1.31191 * 121.37777 * 179.97438 * 21 20 18 23 23 C 1.32928 * 121.84560 * 359.97438 * 22 21 20 24 24 N 1.36633 * 133.27507 * 180.02562 * 23 22 21 25 25 H 0.97002 * 125.33204 * 359.96138 * 24 23 22 26 26 N 1.39794 * 109.32368 * 180.02562 * 24 23 22 27 27 C 1.30201 * 110.13144 * 359.97438 * 26 24 23 28 28 C 1.41073 * 120.20296 * 0.02562 * 23 22 21 29 29 C 1.39518 * 120.41009 * 41.43388 * 20 18 16 30 30 H 1.08993 * 109.47371 * 266.42038 * 1 2 3 31 31 H 1.09002 * 109.47283 * 26.42918 * 1 2 3 32 32 H 1.09000 * 109.47026 * 146.41701 * 1 2 3 33 33 H 0.96997 * 120.00033 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.47396 * 329.99815 * 11 2 1 35 35 H 1.09003 * 109.47075 * 210.00472 * 11 2 1 36 36 H 0.96706 * 113.99867 * 299.99884 * 14 12 11 37 37 H 1.08989 * 109.47085 * 305.00520 * 15 12 11 38 38 H 1.09005 * 109.46269 * 65.00013 * 15 12 11 39 39 H 1.09000 * 109.47300 * 95.45851 * 17 16 15 40 40 H 1.09001 * 109.46969 * 215.45795 * 17 16 15 41 41 H 1.08996 * 109.46903 * 335.46068 * 17 16 15 42 42 H 1.08000 * 119.31286 * 359.97438 * 21 20 18 43 43 H 1.08003 * 126.20615 * 179.97438 * 27 26 24 44 44 H 1.07996 * 121.02339 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1427 1.2362 -0.4217 5 6 1.5674 2.3235 0.5421 6 7 0.4435 2.2281 1.2205 7 14 2.3790 3.9898 0.3090 8 1 2.4778 4.2936 -1.1413 9 1 1.5645 5.0351 0.9789 10 1 3.7397 3.9652 0.9033 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 3.0416 -0.9515 -1.9559 14 8 1.2040 -1.8822 -2.1153 15 6 3.2182 -3.0357 -1.4411 16 7 3.5665 -3.3990 -2.8169 17 6 2.6464 -4.2131 -3.6150 18 6 4.7336 -2.9843 -3.3483 19 8 5.4583 -2.2396 -2.7174 20 6 5.1320 -3.4344 -4.6973 21 6 6.4579 -3.8073 -4.9582 22 7 6.8324 -4.2104 -6.1491 23 6 5.9782 -4.2863 -7.1647 24 7 6.1076 -4.6647 -8.4712 25 1 6.9299 -4.9640 -8.8897 26 7 4.8695 -4.5516 -9.1103 27 6 3.9701 -4.1224 -8.2724 28 6 4.6258 -3.9284 -6.9827 29 6 4.1921 -3.4996 -5.7264 30 1 -0.3634 -0.0642 1.0256 31 1 -0.3634 0.9203 -0.4574 32 1 -0.3633 -0.8561 -0.5684 33 1 0.0365 3.0230 1.5990 34 1 1.6085 -2.0281 0.5148 35 1 3.1499 -1.1381 0.5144 36 1 0.6268 -2.5448 -1.7115 37 1 4.1287 -2.9289 -0.8518 38 1 2.5935 -3.8161 -1.0063 39 1 2.0236 -3.5618 -4.2283 40 1 3.2179 -4.8813 -4.2592 41 1 2.0131 -4.8017 -2.9513 42 1 7.1863 -3.7617 -4.1621 43 1 2.9281 -3.9419 -8.4919 44 1 3.1618 -3.2234 -5.5574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571602941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:08 Heat of formation + Delta-G solvation = 57.190268 kcal Electronic energy + Delta-G solvation = -28387.470897 eV Core-core repulsion = 24343.101349 eV Total energy + Delta-G solvation = -4044.369548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.02895 -40.16647 -38.21803 -37.31253 -35.49961 -34.57106 -33.60223 -31.47888 -31.13144 -30.68956 -29.53611 -27.10105 -26.03795 -25.57151 -24.44169 -23.69242 -22.40903 -21.88606 -20.58315 -19.84628 -18.84090 -17.66630 -17.09849 -16.71676 -16.27374 -16.15390 -15.86466 -15.63506 -15.12689 -14.89498 -14.67122 -14.48523 -14.01818 -13.85715 -13.69342 -13.41091 -13.10445 -12.99081 -12.86489 -12.81183 -12.43079 -11.85016 -11.67997 -11.49357 -11.11395 -11.06688 -10.83831 -10.66755 -10.53059 -10.34029 -10.28165 -10.05025 -9.87653 -9.80847 -9.65686 -9.52815 -8.89212 -8.63111 -8.36568 -6.57627 -5.68206 -3.15754 0.31215 0.54563 1.92444 1.97178 2.60081 2.86739 3.36855 3.44421 3.48258 3.51023 3.84074 3.87527 4.13868 4.29406 4.41454 4.54570 4.71888 4.88891 4.91059 4.97455 5.12485 5.16600 5.27739 5.35550 5.48542 5.51879 5.58076 5.68003 5.80843 5.91114 5.93249 6.01714 6.05410 6.45246 6.60353 6.65456 6.78956 6.85382 6.92364 7.24575 7.46768 7.47163 7.75336 7.87854 8.06735 8.17671 8.49599 9.31055 9.92645 10.43050 11.37701 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.002545 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.081231 B =10998.993445 C =11348.702049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.591 5.591 3 C -0.254 4.254 4 H 0.064 0.936 5 C 0.004 3.996 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.126 3.874 12 C 0.070 3.930 13 H 0.098 0.902 14 O -0.549 6.549 15 C 0.085 3.915 16 N -0.600 5.600 17 C 0.077 3.923 18 C 0.566 3.434 19 O -0.525 6.525 20 C -0.219 4.219 21 C 0.224 3.776 22 N -0.507 5.507 23 C 0.328 3.672 24 N -0.493 5.493 25 H 0.445 0.555 26 N -0.237 5.237 27 C 0.099 3.901 28 C -0.236 4.236 29 C 0.040 3.960 30 H 0.013 0.987 31 H 0.050 0.950 32 H -0.001 1.001 33 H 0.252 0.748 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.357 0.643 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.176 0.824 43 H 0.207 0.793 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 -19.559 -15.642 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.312 5.312 3 C -0.384 4.384 4 H 0.082 0.918 5 C -0.195 4.195 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.208 1.208 11 C -0.003 4.003 12 C 0.007 3.993 13 H 0.116 0.884 14 O -0.353 6.353 15 C -0.038 4.038 16 N -0.332 5.332 17 C -0.066 4.066 18 C 0.352 3.648 19 O -0.401 6.401 20 C -0.226 4.226 21 C 0.054 3.946 22 N -0.222 5.222 23 C 0.088 3.912 24 N -0.211 5.211 25 H 0.291 0.709 26 N -0.050 5.050 27 C -0.100 4.100 28 C -0.246 4.246 29 C 0.012 3.988 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.202 0.798 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.193 0.807 43 H 0.223 0.777 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.831 -19.184 -17.043 26.554 hybrid contribution -0.413 0.866 0.930 1.336 sum 6.418 -18.318 -16.113 25.226 Atomic orbital electron populations 1.20723 0.82537 0.97263 0.97074 1.43653 1.01802 1.00139 1.85652 1.19135 1.00392 0.86572 1.32295 0.91793 1.25081 0.97900 0.98760 0.97715 1.70041 1.19895 1.27957 1.37489 0.86337 0.78683 0.83747 0.77792 1.21033 1.21652 1.20846 1.21280 0.97026 0.89544 0.92476 1.23294 0.84129 0.94321 0.97576 0.88375 1.86636 1.29173 1.63287 1.56176 1.22438 1.01570 0.98403 0.81386 1.47641 1.18450 1.52310 1.14779 1.22066 0.93340 0.94733 0.96476 1.17887 0.81219 0.80597 0.85052 1.90852 1.52784 1.34647 1.61828 1.20683 0.96046 1.10289 0.95619 1.22816 0.93045 0.86860 0.91861 1.66813 1.36012 1.20448 0.98889 1.19222 0.90742 0.93906 0.87368 1.45830 1.10319 1.59876 1.05077 0.70912 1.76734 0.89515 1.18161 1.20609 1.25192 0.99825 0.96533 0.88494 1.20448 0.94900 1.13125 0.96152 1.21576 1.00093 0.88098 0.89043 0.96841 0.93074 0.98304 0.93752 0.94454 0.92559 0.79761 0.89014 0.90388 0.91616 0.91551 0.90746 0.80697 0.77679 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.17 8.76 59.85 0.52 4.69 16 2 N -0.59 -14.93 2.84 -181.12 -0.51 -15.44 16 3 C -0.25 -7.19 9.62 -15.06 -0.14 -7.33 16 4 H 0.06 1.81 7.85 -52.48 -0.41 1.39 16 5 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 6 N -0.91 -27.00 10.81 55.49 0.60 -26.40 16 7 Si 0.90 22.57 29.56 -169.99 -5.03 17.54 16 8 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.13 2.47 5.38 -4.05 -0.02 2.45 16 12 C 0.07 1.17 3.48 -26.73 -0.09 1.08 16 13 H 0.10 2.06 8.14 -51.93 -0.42 1.63 16 14 O -0.55 -8.78 11.56 -35.23 -0.41 -9.19 16 15 C 0.09 1.07 5.07 -4.04 -0.02 1.05 16 16 N -0.60 -6.92 2.84 -182.76 -0.52 -7.43 16 17 C 0.08 0.59 8.58 59.85 0.51 1.10 16 18 C 0.57 7.61 7.33 -12.40 -0.09 7.52 16 19 O -0.52 -9.18 16.58 5.30 0.09 -9.09 16 20 C -0.22 -2.40 5.17 -104.83 -0.54 -2.94 16 21 C 0.22 2.40 10.79 -17.10 -0.18 2.22 16 22 N -0.51 -5.64 10.37 -12.03 -0.12 -5.76 16 23 C 0.33 3.40 8.47 -156.09 -1.32 2.08 16 24 N -0.49 -4.29 7.33 31.15 0.23 -4.07 16 25 H 0.45 2.78 8.96 -182.83 -1.64 1.14 16 26 N -0.24 -2.07 12.54 31.87 0.40 -1.67 16 27 C 0.10 0.71 12.30 -15.15 -0.19 0.53 16 28 C -0.24 -2.16 6.36 -105.20 -0.67 -2.83 16 29 C 0.04 0.36 7.79 -38.57 -0.30 0.06 16 30 H 0.01 0.35 7.76 -51.93 -0.40 -0.05 16 31 H 0.05 1.40 6.92 -51.93 -0.36 1.04 16 32 H 0.00 -0.03 6.82 -51.93 -0.35 -0.38 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 35 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 36 H 0.36 4.37 8.81 45.56 0.40 4.77 16 37 H 0.09 1.26 7.49 -51.94 -0.39 0.87 16 38 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 39 H 0.07 0.49 6.86 -51.93 -0.36 0.14 16 40 H 0.07 0.43 6.01 -51.93 -0.31 0.12 16 41 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 42 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.21 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.16 1.11 5.60 -52.49 -0.29 0.82 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -36.55 367.40 -8.54 -45.09 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.17 Total: 1.19 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -2.63 Total: 9.70 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.07 Total: -60.78 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.32 Total: -18.27 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.55 -8.54 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571602941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.281 kcal (2) G-P(sol) polarization free energy of solvation -36.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds