Wall clock time and date at job start Tue Mar 31 2020 17:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99500 * 2 1 4 4 H 1.08009 * 119.99616 * 206.79930 * 3 2 1 5 5 C 1.38810 * 120.00464 * 26.80702 * 3 2 1 6 6 N 1.31622 * 119.99967 * 9.49149 * 5 3 2 7 7 Si 1.86798 * 120.00281 * 189.49345 * 5 3 2 8 8 H 1.48505 * 109.46860 * 59.99405 * 7 5 3 9 9 H 1.48493 * 109.47176 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47210 * 299.99981 * 7 5 3 11 11 C 1.46494 * 119.99995 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47278 * 90.00263 * 11 2 1 13 13 H 1.09004 * 109.47273 * 59.99476 * 12 11 2 14 14 O 1.42901 * 109.47322 * 299.99924 * 12 11 2 15 15 C 1.53007 * 109.47451 * 179.97438 * 12 11 2 16 16 N 1.46496 * 109.47334 * 184.99625 * 15 12 11 17 17 C 1.46502 * 120.00433 * 270.00412 * 16 15 12 18 18 C 1.34778 * 119.99484 * 90.00308 * 16 15 12 19 19 O 1.21569 * 120.00164 * 355.35938 * 18 16 15 20 20 C 1.47686 * 119.99987 * 175.36286 * 18 16 15 21 21 C 1.40180 * 120.41140 * 221.72213 * 20 18 16 22 22 N 1.31191 * 121.37777 * 179.97438 * 21 20 18 23 23 C 1.32928 * 121.84560 * 359.97438 * 22 21 20 24 24 N 1.36633 * 133.27507 * 180.02562 * 23 22 21 25 25 H 0.97002 * 125.33204 * 359.96138 * 24 23 22 26 26 N 1.39794 * 109.32368 * 180.02562 * 24 23 22 27 27 C 1.30201 * 110.13144 * 359.97438 * 26 24 23 28 28 C 1.41073 * 120.20296 * 0.02562 * 23 22 21 29 29 C 1.39518 * 120.41009 * 41.43388 * 20 18 16 30 30 H 1.08993 * 109.47371 * 266.42038 * 1 2 3 31 31 H 1.09002 * 109.47283 * 26.42918 * 1 2 3 32 32 H 1.09000 * 109.47026 * 146.41701 * 1 2 3 33 33 H 0.96997 * 120.00033 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.47396 * 329.99815 * 11 2 1 35 35 H 1.09003 * 109.47075 * 210.00472 * 11 2 1 36 36 H 0.96706 * 113.99867 * 299.99884 * 14 12 11 37 37 H 1.08989 * 109.47085 * 305.00520 * 15 12 11 38 38 H 1.09005 * 109.46269 * 65.00013 * 15 12 11 39 39 H 1.09000 * 109.47300 * 95.45851 * 17 16 15 40 40 H 1.09001 * 109.46969 * 215.45795 * 17 16 15 41 41 H 1.08996 * 109.46903 * 335.46068 * 17 16 15 42 42 H 1.08000 * 119.31286 * 359.97438 * 21 20 18 43 43 H 1.08003 * 126.20615 * 179.97438 * 27 26 24 44 44 H 1.07996 * 121.02339 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1427 1.2362 -0.4217 5 6 1.5674 2.3235 0.5421 6 7 0.4435 2.2281 1.2205 7 14 2.3790 3.9898 0.3090 8 1 2.4778 4.2936 -1.1413 9 1 1.5645 5.0351 0.9789 10 1 3.7397 3.9652 0.9033 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 3.0416 -0.9515 -1.9559 14 8 1.2040 -1.8822 -2.1153 15 6 3.2182 -3.0357 -1.4411 16 7 3.5665 -3.3990 -2.8169 17 6 2.6464 -4.2131 -3.6150 18 6 4.7336 -2.9843 -3.3483 19 8 5.4583 -2.2396 -2.7174 20 6 5.1320 -3.4344 -4.6973 21 6 6.4579 -3.8073 -4.9582 22 7 6.8324 -4.2104 -6.1491 23 6 5.9782 -4.2863 -7.1647 24 7 6.1076 -4.6647 -8.4712 25 1 6.9299 -4.9640 -8.8897 26 7 4.8695 -4.5516 -9.1103 27 6 3.9701 -4.1224 -8.2724 28 6 4.6258 -3.9284 -6.9827 29 6 4.1921 -3.4996 -5.7264 30 1 -0.3634 -0.0642 1.0256 31 1 -0.3634 0.9203 -0.4574 32 1 -0.3633 -0.8561 -0.5684 33 1 0.0365 3.0230 1.5990 34 1 1.6085 -2.0281 0.5148 35 1 3.1499 -1.1381 0.5144 36 1 0.6268 -2.5448 -1.7115 37 1 4.1287 -2.9289 -0.8518 38 1 2.5935 -3.8161 -1.0063 39 1 2.0236 -3.5618 -4.2283 40 1 3.2179 -4.8813 -4.2592 41 1 2.0131 -4.8017 -2.9513 42 1 7.1863 -3.7617 -4.1621 43 1 2.9281 -3.9419 -8.4919 44 1 3.1618 -3.2234 -5.5574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571602941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:02 Heat of formation + Delta-G solvation = 29.106695 kcal Electronic energy + Delta-G solvation = -28388.688693 eV Core-core repulsion = 24343.101349 eV Total energy + Delta-G solvation = -4045.587343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.73499 -41.12013 -39.17213 -38.54823 -36.85017 -36.06204 -34.38137 -33.27672 -32.02552 -31.52581 -30.77548 -28.11431 -27.77154 -27.09976 -25.16217 -24.73720 -23.54239 -22.81120 -22.24393 -20.77739 -19.55389 -18.80698 -18.46280 -17.88372 -17.41962 -17.12782 -16.79931 -16.72985 -16.38571 -16.22752 -16.06317 -15.46151 -15.09061 -14.91982 -14.77005 -14.68139 -14.60430 -14.08399 -13.82983 -13.67557 -13.56713 -13.18094 -12.97471 -12.80155 -12.60470 -12.46907 -12.34983 -12.19052 -12.03773 -11.95081 -11.81072 -11.76700 -11.28580 -11.18424 -10.64891 -10.55258 -10.24066 -9.69672 -9.52816 -8.58759 -7.83343 -5.32822 -0.38219 -0.24939 1.28175 1.36468 1.43629 1.45632 1.52474 1.64131 1.96875 2.50156 2.57428 3.14910 3.23720 3.29879 3.44284 3.55724 3.61358 3.69919 3.79316 4.01746 4.16189 4.23651 4.32410 4.34298 4.48561 4.55928 4.59861 4.74362 4.80952 4.83607 4.98852 5.00119 5.06569 5.08745 5.27808 5.33834 5.45168 5.55314 5.61834 5.74844 5.97554 6.20547 6.33977 6.37205 6.74264 7.07786 7.10683 7.18620 7.91613 8.33569 9.19200 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.002545 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.081231 B =10998.993445 C =11348.702049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.611 5.611 3 C -0.263 4.263 4 H 0.055 0.945 5 C -0.049 4.049 6 N -0.936 5.936 7 Si 0.963 3.037 8 H -0.282 1.282 9 H -0.289 1.289 10 H -0.277 1.277 11 C 0.121 3.879 12 C 0.093 3.907 13 H 0.049 0.951 14 O -0.558 6.558 15 C 0.095 3.905 16 N -0.596 5.596 17 C 0.069 3.931 18 C 0.562 3.438 19 O -0.578 6.578 20 C -0.232 4.232 21 C 0.218 3.782 22 N -0.524 5.524 23 C 0.312 3.688 24 N -0.493 5.493 25 H 0.452 0.548 26 N -0.256 5.256 27 C 0.115 3.885 28 C -0.243 4.243 29 C 0.057 3.943 30 H -0.008 1.008 31 H 0.015 0.985 32 H 0.040 0.960 33 H 0.249 0.751 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.379 0.621 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.178 0.822 43 H 0.248 0.752 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -21.450 -17.136 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.334 5.334 3 C -0.393 4.393 4 H 0.072 0.928 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.791 3.209 8 H -0.209 1.209 9 H -0.214 1.214 10 H -0.203 1.203 11 C -0.006 4.006 12 C 0.030 3.970 13 H 0.067 0.933 14 O -0.364 6.364 15 C -0.029 4.029 16 N -0.326 5.326 17 C -0.072 4.072 18 C 0.351 3.649 19 O -0.459 6.459 20 C -0.240 4.240 21 C 0.049 3.951 22 N -0.239 5.239 23 C 0.071 3.929 24 N -0.211 5.211 25 H 0.299 0.701 26 N -0.068 5.068 27 C -0.084 4.084 28 C -0.253 4.253 29 C 0.029 3.971 30 H 0.010 0.990 31 H 0.034 0.966 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.227 0.773 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.195 0.805 43 H 0.264 0.736 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.583 -21.152 -18.579 28.701 hybrid contribution -0.059 1.348 1.311 1.882 sum 5.524 -19.804 -17.267 26.849 Atomic orbital electron populations 1.20476 0.82434 0.97131 0.96003 1.43887 1.02213 1.01185 1.86075 1.19347 1.00199 0.88293 1.31502 0.92759 1.25774 0.98725 1.01873 0.98079 1.70180 1.21047 1.28377 1.38607 0.85414 0.77942 0.79966 0.77571 1.20881 1.21430 1.20275 1.21513 0.96309 0.88074 0.94687 1.22669 0.84647 0.95310 0.94362 0.93261 1.86593 1.29147 1.64463 1.56201 1.22235 1.00981 0.97294 0.82374 1.47712 1.18430 1.51848 1.14610 1.22355 0.93102 0.94771 0.96953 1.18277 0.81287 0.79786 0.85589 1.90822 1.54534 1.37128 1.63373 1.20476 0.96602 1.11936 0.94968 1.22890 0.93333 0.86922 0.91998 1.66802 1.36618 1.21248 0.99191 1.19520 0.91519 0.94135 0.87760 1.45932 1.10921 1.59642 1.04588 0.70085 1.76753 0.89683 1.19205 1.21168 1.25888 1.01172 0.94436 0.86868 1.20669 0.94633 1.13043 0.96945 1.21734 1.00579 0.86502 0.88281 0.99009 0.96613 0.94175 0.94188 0.91259 0.93914 0.77298 0.90545 0.86075 0.90901 0.90136 0.88249 0.80505 0.73607 0.80541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.03 8.76 127.77 1.12 10.15 16 2 N -0.61 -30.89 2.84 -726.95 -2.06 -32.95 16 3 C -0.26 -15.13 9.62 84.03 0.81 -14.32 16 4 H 0.05 3.16 7.85 -2.91 -0.02 3.14 16 5 C -0.05 -2.87 5.10 84.86 0.43 -2.44 16 6 N -0.94 -56.58 10.81 21.65 0.23 -56.34 16 7 Si 0.96 47.15 29.56 68.60 2.03 49.18 16 8 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 C 0.12 4.66 5.38 86.38 0.46 5.12 16 12 C 0.09 3.01 3.48 30.59 0.11 3.12 16 13 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 14 O -0.56 -16.18 11.56 -148.98 -1.72 -17.91 16 15 C 0.09 2.19 5.07 86.38 0.44 2.63 16 16 N -0.60 -12.51 2.84 -850.38 -2.41 -14.92 16 17 C 0.07 0.79 8.58 127.77 1.10 1.89 16 18 C 0.56 14.94 7.33 86.74 0.64 15.58 16 19 O -0.58 -21.00 16.58 -3.93 -0.07 -21.07 16 20 C -0.23 -4.91 5.17 -20.00 -0.10 -5.01 16 21 C 0.22 4.72 10.79 85.26 0.92 5.64 16 22 N -0.52 -11.54 10.37 -191.96 -1.99 -13.53 16 23 C 0.31 6.12 8.47 134.18 1.14 7.26 16 24 N -0.49 -7.98 7.33 -55.36 -0.41 -8.38 16 25 H 0.45 5.35 8.96 -213.51 -1.91 3.44 16 26 N -0.26 -3.89 12.54 -53.08 -0.67 -4.55 16 27 C 0.12 1.28 12.30 86.94 1.07 2.35 16 28 C -0.24 -3.87 6.36 -20.24 -0.13 -4.00 16 29 C 0.06 0.90 7.79 22.92 0.18 1.07 16 30 H -0.01 -0.44 7.76 -2.39 -0.02 -0.46 16 31 H 0.01 0.84 6.92 -2.39 -0.02 0.82 16 32 H 0.04 1.59 6.82 -2.39 -0.02 1.58 16 33 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 35 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 36 H 0.38 7.49 8.81 -74.05 -0.65 6.84 16 37 H 0.08 2.06 7.49 -2.39 -0.02 2.04 16 38 H 0.12 1.80 7.86 -2.38 -0.02 1.78 16 39 H 0.07 0.78 6.86 -2.39 -0.02 0.76 16 40 H 0.08 0.73 6.01 -2.39 -0.01 0.72 16 41 H 0.10 0.69 7.83 -2.39 -0.02 0.67 16 42 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.25 0.36 8.06 -2.91 -0.02 0.34 16 44 H 0.18 1.91 5.60 -2.91 -0.02 1.89 16 Total: -1.00 -82.75 367.40 -0.38 -83.14 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -1.50 Total: 8.30 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: 8.17 Total: 29.04 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -7.30 Total: -130.68 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.79 Total: -38.97 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -82.75 -0.38 -83.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571602941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.244 kcal (2) G-P(sol) polarization free energy of solvation -82.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds